cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s13148-016-0230-5

Peripheral blood methylation profiling of female Crohn’s disease patients
Cited by: 40
Author(s): Andrew Y. Li Yim, Nicolette W. Duijvis, Jing Hua Zhao, Wouter J. de Jonge, Geert R. D’Haens, Marcel M.A.M. Mannens, Adri N. Mul, Anje A. te Velde, Peter Henneman
Software Mentions: 8
Published: almost 10 years ago

10.1186/s12957-021-02328-w

Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancer
Cited by: 10
Author(s): Jianhua Wu, Xuan Wang, Nan Wang, Li Ma, Xin Xie, Hao Zhang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 8
Published: almost 5 years ago

10.1186/s13059-020-01998-1

Wheat chromatin architecture is organized in genome territories and transcription factories
Cited by: 89
Author(s): Lorenzo Concia, Alaguraj Veluchamy, Juan S. Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Séverine Domenichini, Natalia Y. Rodriguez Granados, Soon-Kap Kim, Thomas Blein, Susan Duncan, Clement Pichot, Deborah Manza‐Mianza, Caroline Juéry, Etienne Paux, Graham Moore, Heribert Hirt, Catherine Bergounioux, Martín Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane, Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse, Moussa Benhamed
Software Mentions: 8
Published: about 6 years ago

10.1111/eva.12761

Pervasive admixture between eucalypt species has consequences for conservation and assisted migration
Cited by: 15
Author(s): Brenton von Takach, Cameron Jack, Justin O. Borevitz, David B. Lindenmayer, Sam C. Banks
Software Mentions: 8
Published: over 7 years ago

10.3389/fmolb.2019.00005

Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in Glioblastoma
Cited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: over 7 years ago

10.1186/s13059-018-1435-z

RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum
Cited by: 152
Author(s): Chunhui Ma, Mengqi Chang, Hongyi Lv, Zhiwei Zhang, Weilong Zhang, Xue He, Gaolang Wu, Shuaiyang Zhao, Yao Zhang, Di Wang, Xufei Teng, Chunying Liu, Qing Li, Arne Klungland, Yamei Niu, Shuhui Song, Wei‐Min Tong
Software Mentions: 8
Published: about 8 years ago

10.1038/s42003-020-01156-0

Artificial eyespots on cattle reduce predation by large carnivores
Cited by: 12
Author(s): Cameron Radford, J. Weldon McNutt, Tracey L. Rogers, Ben Maslen, Neil R. Jordan
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmolb.2021.655126

Silencing of the TRIM58 Gene by Aberrant Promoter Methylation is Associated with a Poor Patient Outcome and Promotes Cell Proliferation and Migration in Clear Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Ying Gan, Congcong Cao, Aolin Li, Haifeng Song, Guanyu Kuang, Binglei Ma, Quan Zhang, Qian Zhang
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pntd.0007305

A community-based knowledge, attitude, and practice survey on rabies among cattle owners in selected areas of Bhutan
Cited by: 26
Author(s): Sangay Rinchen, Tenzin Tenzin, David C. Hall, Frank van der Meer, Basant Sharma, Kinzang Dukpa, Susan C. Cork
Software Mentions: 8
Published: about 7 years ago

10.1002/ece3.7995

The hidden side of diversity: Effects of imperfect detection on multiple dimensions of biodiversity
Cited by: 7
Author(s): Aline Richter, Gabriel Nakamura, Cristiano Agra Iserhard, Leandro da Silva Duarte
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.ppat.1009933

Trypanosoma brucei triggers a broad immune response in the adipose tissue
Cited by: 11
Author(s): Henrique Machado, Tiago Bizarra-Rebelo, Mariana Sequeira, Sandra Trindade, Tãnia Carvalho, Filipa Rijo‐Ferreira, Barbara Rentroia‐Pacheco, Karine Serre, Luísa M. Figueiredo
Software Mentions: 8
Published: over 4 years ago

10.1002/ece3.7428

An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat loss
Cited by: 15
Author(s): Ary A. Hoffmann, Vanessa L. White, Moshe Jasper, Hiromi Yagui, Steve Sinclair, Michael R. Kearney
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0239639

Monsters with a shortened vertebral column: A population phenomenon in radiating fish Labeobarbus (Cyprinidae)
Cited by: 9
Author(s): А. С. Голубцов, Nikolai B. Korostelev, Б. А. Левин
Software Mentions: 8
Published: over 5 years ago

10.1007/s00300-021-02823-6

Seasonal dynamics of meroplankton in a sub-Antarctic fjord (Southern Patagonia, Chile)
Cited by: 1
Author(s): Santiago E A Pineda-Metz, Américo Montiel
Software Mentions: 8
Published: about 5 years ago

10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: almost 5 years ago

10.3390/tropicalmed6010028

Knowledge and Perception of Rabies among School Children in Rabies Endemic Areas of South Bhutan
Cited by: 4
Author(s): Lungten Lungten, Sangay Rinchen, Tenzin Tenzin, Waraphon Phimpraphai, Michel De Garine‐Wichatitsky
Software Mentions: 8
Published: over 5 years ago

10.1128/mBio.00925-19

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium
Cited by: 95
Author(s): Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas
Software Mentions: 8
Published: almost 7 years ago

10.1016/S2542-5196(21)00030-9

Identifying urban hotspots of dengue, chikungunya, and Zika transmission in Mexico to support risk stratification efforts: a spatial analysis
Cited by: 28
Author(s): Felipe Dzul-Manzanilla, Fabián Correa-Morales, Azael Che-Mendoza, Jorge Palacio-Vargas, Gustavo Sánchez-Tejeda, Jesús Felipe González-Roldán, Hugo López‐Gatell, Adriana E. Flores-Suárez, Héctor Gómez–Dantés, Giovanini Evelim Coelho, Haroldo Sergio da Silva Bezerra, Norma Pavía-Ruz, Audrey Lenhart, Pablo Manrique-Saide, Gonzalo M. Vázquez-Prokopec
Software Mentions: 8
Published: about 5 years ago

10.1128/mSystems.01356-20

Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities
Cited by: 26
Author(s): Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan, Phillip G. Popovich
Software Mentions: 8
Published: almost 5 years ago

10.12688/wellcomeopenres.15210.2

"If you catch my drift...": ability to infer implied meaning is distinct from vocabulary and grammar skills
Cited by: 10
Author(s): Alexander C. Wilson, Dorothy V. M. Bishop
Software Mentions: 8
Published: almost 7 years ago

10.1128/mSystems.01153-20

Bacterial Communities in Concrete Reflect Its Composite Nature and Change with Weathering
Cited by: 8
Author(s): E. Anders Kiledal, Jessica L. Keffer, Julia A. Maresca
Software Mentions: 8
Published: almost 5 years ago

10.3389/fmicb.2019.02761

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition
Cited by: 6
Author(s): Thomas Hartinger, Joan E. Edwards, Ruth Gómez Expósito, Hauke Smidt, Cajo J. F. ter Braak, N. Gresner, K. H. Südekum
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0199841

Spatially explicit action research for coastal fisheries management
Cited by: 7
Author(s): Tara N. Lawrence, R. S. Bhalla
Software Mentions: 8
Published: almost 8 years ago

10.3390/biom11050695

Variations in Gut Microbiome are Associated with Prognosis of Hypertriglyceridemia-Associated Acute Pancreatitis
Cited by: 10
Author(s): Xiaomin Hu, Liang Gong, Ronggang Zhou, Ziying Han, Ji Li, Yan Zhang, Shuyang Zhang, Dong Wu
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0143666

Pathogenesis of Primary Foot-and-Mouth Disease Virus Infection in the Nasopharynx of Vaccinated and Non-Vaccinated Cattle
Cited by: 44
Author(s): Carolina Stenfeldt, Michael Eschbaumer, Juan M. Pacheco, Steven I. Rekant, Luis L. Rodrı́guez, Jonathan Arzt
Software Mentions: 8
Published: over 10 years ago

10.1101/2020.12.03.20242032

Cortical Mechanisms of Visual Hypersensitivity in Women at Risk for Chronic Pelvic Pain
Cited by: 0
Author(s): Matthew J. Kmiecik, Frank F. Tu, Rebecca L. Silton, Katlyn E Dillane, Genevieve E. Roth, Steven E. Harte, Kevin M. Hellman
Software Mentions: 8
Published: over 5 years ago

10.1186/s40170-020-00220-x

Metabolite AutoPlotter - an application to process and visualise metabolite data in the web browser
Cited by: 18
Author(s): Matthias Pietzke, Alexei Vazquez
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.65508

Seroconversion stages COVID19 into distinct pathophysiological states
Cited by: 36
Author(s): Matthew D. Galbraith, Kohl T Kinning, Kelly D. Sullivan, Ryan M. Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P Smith, Ross E Granrath, Jessica Shaw, Monika Dzieciątkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. Hansen, Tellen D Benett, Elena W.Y. Hsieh, Joaquín M. Espinosa
Software Mentions: 8
Published: about 5 years ago

10.3389/fonc.2019.01310

Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade Glioma
Cited by: 31
Author(s): Xiaoyun Deng, Dongdong Lin, Bo Chen, Xiaojia Zhang, Xingxing Xu, Zhisheng Yang, Xuchao Shen, Liang Yang, Xiaoyong Lu, Song Huang, Bo Yin, Nu Zhang, Jian Lin
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0109917

Adjacent Habitat Influence on Stink Bug (Hemiptera: Pentatomidae) Densities and the Associated Damage at Field Corn and Soybean Edges
Cited by: 67
Author(s): P. Dilip Venugopal, Peter L. Coffey, Galen P. Dively, William O. Lamp
Software Mentions: 8
Published: over 11 years ago

10.1515/tnsci-2021-0004

Calumenin contributes to epithelial-mesenchymal transition and predicts poor survival in glioma
Cited by: 8
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Fei Shi, Aijun Shan
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0251416

Compounds from plantar foot sweat, nesting material, and urine show strain patterns associated with agonistic and affiliative behaviors in group housed male mice, Mus musculus
Cited by: 4
Author(s): Amanda J. Barabas, Helena A. Soini, Miloš V. Novotný, David R. Williams, Jacob A. Desmond, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2018.00570

SIPSim: A Modeling Toolkit to Predict Accuracy and Aid Design of DNA-SIP Experiments
Cited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 8
Published: about 8 years ago

10.3389/fgene.2020.568223

Taxonomic Novelty and Distinctive Genomic Features of Hot Spring Cyanobacteria
Cited by: 32
Author(s): Jaime Alcorta, Tomás Alarcón-Schumacher, Óscar Rivero Salgado, Beatriz Dı́ez
Software Mentions: 8
Published: over 5 years ago

10.1186/s13059-019-1641-3

dStruct: identifying differentially reactive regions from RNA structurome profiling data
Cited by: 20
Author(s): Krishna Choudhary, Yi-Chun Lai, Elizabeth Tran, Sharon Aviran
Software Mentions: 8
Published: over 7 years ago

10.1161/HYPERTENSIONAHA.121.17403

Blood Pressure Determinants of Cerebral White Matter Hyperintensities and Microstructural Injury: UK Biobank Cohort Study
Cited by: 13
Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: almost 5 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: over 5 years ago

10.1038/s41396-018-0279-6

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
Cited by: 228
Author(s): Roland C. Wilhelm, Rahul Singh, Lindsay D. Eltis, William W. Mohn
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-020-71211-7

Larval pesticide exposure impacts monarch butterfly performance
Cited by: 19
Author(s): Paola Olaya‐Arenas, Kayleigh C Hauri, Michael E. Scharf, Ian Kaplan
Software Mentions: 8
Published: almost 6 years ago

10.12688/f1000research.18002.1

Epidemic curves made easy using the R package incidence
Cited by: 38
Author(s): Zhian N. Kamvar, Jun Cai, Juliet R. C. Pulliam, Jakob Schumacher, Thibaut Jombart
Software Mentions: 8
Published: over 7 years ago

10.1186/s13059-021-02260-y

LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions
Cited by: 31
Author(s): Maša Roller, Ericca L. Stamper, Diego Villar, Osagie Izuogu, Fergal J. Martin, Aisling M. Redmond, Raghavendra Ramachanderan, Louise Harewood, Duncan T. Odom, Paul Flicek
Software Mentions: 8
Published: over 5 years ago

10.1038/s41396-021-00902-4

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs
Cited by: 51
Author(s): Justin Maire, Sam K. Girvan, Sophie E. Barkla, Alexis Perez‐Gonzalez, David J. Suggett, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0230262

So far, so good… Similar fitness consequences and overall energetic costs for short and long-distance migrants in a seabird
Cited by: 10
Author(s): David Pelletier, Yannick Seyer, Stefan Garthe, Salomé Bonnefoi, Richard A. Phillips, Magella Guillemette
Software Mentions: 8
Published: about 6 years ago

10.1038/s41396-020-0622-6

Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes
Cited by: 35
Author(s): Bettina Glasl, Steven J. Robbins, Pedro R. Frade, Emma Marangon, Patrick W. Laffy, David G. Bourne, Nicole S. Webster
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0234537

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities
Cited by: 0
Author(s): Boahemaa Adu-Oppong, Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12864-020-6534-z

Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni
Cited by: 17
Author(s): Lijun Lu, Eric S. Loker, Si-Ming Zhang, Sarah Kay Buddenborg, Lijing Bu
Software Mentions: 8
Published: over 6 years ago

10.1017/S1368980019003239

Four decades of socio-economic inequality and secular change in the physical growth of Guatemalans
Cited by: 14
Author(s): Liina Mansukoski, William Johnson, Katherine Brooke‐Wavell, J. Andres Galvez-Sobral, L.R. Furlan, Tim J. Cole, Barry Bogin
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-69160-2

Individual-based population genomics reveal different drivers of adaptation in sympatric fish
Cited by: 10
Author(s): Héctor Torrado, Carlos Carreras, Núria Raventós, Enrique Macpherson, Marta Pascual
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41396-020-0621-7

Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationship
Cited by: 120
Author(s): Jiwen Liu, Shangqing Zhu, Xiaoyue Liu, Peng Yao, Tiantian Ge, Xiao‐Hua Zhang
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.5940

Hollow oaks and beetle functional diversity: Significance of surroundings extends beyond taxonomy
Cited by: 11
Author(s): Ross Wetherbee, Tone Birkemoe, Olav Skarpaas, Anne Sverdrup‐Thygeson
Software Mentions: 8
Published: over 6 years ago

10.7717/peerj.7816

CELSR3 mRNA expression is increased in hepatocellular carcinoma and indicates poor prognosis
Cited by: 11
Author(s): Xuefeng Gu, Hongbo Li, Ling Sha, Man Yuan, Chao Shi, Wei Zhao
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0106499

Mean Annual Precipitation Explains Spatiotemporal Patterns of Cenozoic Mammal Beta Diversity and Latitudinal Diversity Gradients in North America
Cited by: 26
Author(s): Danielle Fraser, Christopher Hassall, Root Gorelick, Natalia Rybczynski
Software Mentions: 8
Published: over 11 years ago

10.1186/s13148-020-00838-0

DNA methylation outlier burden, health, and ageing in Generation Scotland and the Lothian Birth Cohorts of 1921 and 1936
Cited by: 17
Author(s): Anne Seeboth, Daniel L. McCartney, Yunzhang Wang, Robert F. Hillary, Anna J. Stevenson, Rosie M. Walker, Archie Campbell, Kathryn Evans, Andrew M. McIntosh, Sara Hägg, Ian J. Deary, Riccardo E. Marioni
Software Mentions: 8
Published: about 6 years ago

10.1186/s12864-020-06971-7

Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis
Cited by: 44
Author(s): Asimenia Gavriilidou, Johanna Gutleben, Dennis Versluis, Francesca Forgiarini, Mark W. J. van Passel, Colin J. Ingham, Hauke Smidt, Detmer Sipkema
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-020-67870-1

Investigating the influence of mtDNA and nuclear encoded mitochondrial variants on high intensity interval training outcomes
Cited by: 6
Author(s): Nicholas R. Harvey, Sarah Voisin, Rodney Arthur Lea, Xu Yan, Miles C. Benton, ID Papadimitriou, Jacques Michaux, Larisa M. Haupt, Kevin J. Ashton, Nir Eynon, Lyn R. Griffiths
Software Mentions: 8
Published: almost 6 years ago

10.1186/s13148-020-00899-1

Highly accurate skin-specific methylome analysis algorithm as a platform to screen and validate therapeutics for healthy aging
Cited by: 23
Author(s): Mariana Boroni, Alessandra Zonari, Carolina Reis de Oliveira, Kallie Al-Katib, Edgar Andrés Ochoa Cruz, Lear E. Brace, Juliana Lott Carvalho
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0224879

Long non-coding RNAs and latent HIV – A search for novel targets for latency reversal
Cited by: 17
Author(s): Wim Trypsteen, Cory H. White, Amey Mukim, Celsa A. Spina, Ward De Spiegelaere, Steve Lefever, Vicente Planelles, Alberto Bosque, Christopher H. Woelk, Linos Vandekerckhove, Nadejda Beliakova-Bethell
Software Mentions: 8
Published: over 6 years ago

10.1186/s13148-020-00996-1

Integrated analysis reveals the alterations that LMNA interacts with euchromatin in LMNA mutation-associated dilated cardiomyopathy
Cited by: 9
Author(s): Xiaolin Zhang, Xiuli Shao, Ruijia Zhang, Rongli Zhu, Rui Feng
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0246052

Transcriptomic profiling of susceptible and resistant flax seedlings after Fusarium oxysporum lini infection
Cited by: 10
Author(s): Aleksandra Boba, Kamil Kostyń, Bartosz Kozak, Iwan Zalewski, Jan Szopa, Anna Kulma
Software Mentions: 8
Published: over 5 years ago

10.1186/s13148-021-01144-z

Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes
Cited by: 9
Author(s): Sara Di Persio, Elsa Leitão, Marius Wöste, Tobias Tekath, Jann‐Frederik Cremers, Martin Dugas, Xiaolin Liao, Gerd Meyer zu Hörste, Sabine Kliesch, Sandra Laurentino, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 8
Published: almost 5 years ago

10.3389/fgene.2019.00654

The Impact of cDNA Normalization on Long-Read Sequencing of a Complex Transcriptome
Cited by: 5
Author(s): Nam V. Hoang, Agnelo Furtado, Virginie Perlo, Frederik C. Botha, Robert J. Henry
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pntd.0008623

Population genomic evidence that human and animal infections in Africa come from the same populations of Dracunculus medinensis
Cited by: 16
Author(s): Caroline Durrant, Elizabeth A. Thiele, Nancy Holroyd, Stephen R. Doyle, Guillaume Sallé, Alan S. Tracey, Geetha Sankaranarayanan, Magda E. Lotkowska, Hayley M. Bennett, Harrison Thomas, Zahra Abdellah, Ouakou Tchindebet, Mesfin Wossen, Makoy Samuel Yibi Logora, Cheick Oumar Coulibaly, Adam Weiss, Albrecht I. Schulte‐Hostedde, Jeremy M. Foster, Christopher A. Cleveland, Michael J. Yabsley, Ernesto Ruiz‐Tiben, Matthew Berriman, Mark L. Eberhard, James A. Cotton
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2020.535985

Biomarker Discovery for the Carcinogenic Heterogeneity Between Colon and Rectal Cancers Based on lncRNA-Associated ceRNA Network Analysis
Cited by: 24
Author(s): Xin Qi, Yuxin Lin, Xingyun Liu, Jiajia Chen, Bairong Shen
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2021.642144

Complement C1q (C1qA, C1qB, and C1qC) May Be a Potential Prognostic Factor and an Index of Tumor Microenvironment Remodeling in Osteosarcoma
Cited by: 33
Author(s): Longhao Chen, Jinfu Liu, Yan Lu, Xinyu He, Chi Zhang, Huanyi Zhou
Software Mentions: 8
Published: about 5 years ago

10.1007/s12031-020-01787-2

Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
Cited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: over 5 years ago

10.1002/evl3.110

Comparative genomics of 10 newCaenorhabditisspecies
Cited by: 105
Author(s): Lewis Stevens, Marie‐Anne Félix, Toni Beltran, Christian Braendle, Carlos Caurcel, Sarah Fausett, David Fitch, Lise Frézal, Charlie Gosse, Taniya Kaur, Karin Kiontke, Matthew D. Newton, Luke M. Noble, Aurélien Richaud, Matthew V. Rockman, Walter Sudhaus, Mark Blaxter
Software Mentions: 8
Published: about 7 years ago

10.1038/s41598-018-23630-w

The Anti-Cancer Multikinase Inhibitor Sorafenib Impairs Cardiac Contractility by Reducing Phospholamban Phosphorylation and Sarcoplasmic Calcium Transients
Cited by: 21
Author(s): Christopher Schneider, Markus Wallner, Ewald Kolesnik, Viktoria Herbst, Heinrich Mächler, Martin Pichler, Dirk von Lewinski, Simon Sedej, Peter P. Rainer
Software Mentions: 8
Published: about 8 years ago

10.1186/s12862-017-0976-1

The effect of body size evolution and ecology on encephalization in cave bears and extant relatives
Cited by: 9
Author(s): Kristof Veitschegger
Software Mentions: 8
Published: almost 9 years ago

10.3390/cancers13061212

Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple Myeloma
Cited by: 3
Author(s): Ashwini Kumar, Sadiksha Adhikari, Matti Kankainen, Caroline A. Heckman
Software Mentions: 8
Published: about 5 years ago

10.3389/fonc.2021.597447

A Dynamic Transcription Factor Signature Along the Colorectal Adenoma-Carcinoma Sequence in Patients With Co-Occurrent Adenoma and Carcinoma
Cited by: 3
Author(s): Zongfu Pan, Ying He, Wei Zhu, Tao Xu, Xiaoping Hu, Ping Huang
Software Mentions: 8
Published: about 5 years ago

10.1016/j.gpb.2019.09.007

Antidiabetic Effects of Gegen Qinlian Decoction via the Gut Microbiota Are Attributable to Its Key Ingredient Berberine
Cited by: 59
Author(s): Xizhan Xu, Zezheng Gao, Fuchao Yang, Yingying Yang, Liang Chen, Han Chieh Lin, Na Zhao, Jiayue Xu, Xinmiao Wang, Yue Ma, Lian Shu, Xueyou Hu, Na Lyu, Yuanlong Pan, Baoli Zhu, Linhua Zhao, Xiaolin Tong, Jun Wang
Software Mentions: 8
Published: over 5 years ago

10.3390/ijms21134630

Self-Repair in Cacti Branches: Comparative Analyses of Their Morphology, Anatomy, and Biomechanics
Cited by: 10
Author(s): Max D. Mylo, Friederike Krüger, Thomas Speck, Olga Speck
Software Mentions: 8
Published: almost 6 years ago

10.1136/bmjopen-2020-040132

Prediction of perinatal death using machine learning models: a birth registry-based cohort study in northern Tanzania
Cited by: 27
Author(s): Innocent B. Mboya, Michael Johnson Mahande, Mohanad Mohammed, Joseph Obure, Henry Mwambi
Software Mentions: 8
Published: over 5 years ago

10.3389/fneur.2019.01060

Notification Strategy and Predictors of Outcome in Stroke Ineligible for Reperfusion Therapies
Cited by: 2
Author(s): Ágnes Mirolovics, Magdolna Bokor, Balázs Dobi, Judit Zsuga, Dániel Bereczki
Software Mentions: 8
Published: over 6 years ago

10.1093/eurheartj/ehaa756

Midlife blood pressure is associated with the severity of white matter hyperintensities: analysis of the UK Biobank cohort study
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Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: over 5 years ago

10.1093/molbev/msab166

ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data
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Author(s): Shuaimei Xu, Zhigang Dai, Pingfan Guo, Xiaocong Fu, Shanshan Liu, Lang Zhou, Wenli Tang, Tingze Feng, Meijun Chen, Li Zhan, Tianzhi Wu, Erqiang Hu, Yong Jiang, Xiaochen Bo, Guangchuang Yu
Software Mentions: 8
Published: almost 5 years ago

10.1093/jxb/eraa465

Targeted expression of the arsenate reductase HAC1 identifies cell type specificity of arsenic metabolism and transport in plant roots
Cited by: 9
Author(s): Sina Fischer, Eduardo Sánchez-Bermejo, Xuejie Xu, Paulina Flis, Priya Ramakrishna, Mary Lou Guerinot, Fang‐Jie Zhao, David E. Salt
Software Mentions: 8
Published: over 5 years ago

10.1186/s13071-018-3280-z

Probability of dengue transmission and propagation in a non-endemic temperate area: conceptual model and decision risk levels for early alert, prevention and control
Cited by: 13
Author(s): Cecilia Marques-Toledo, Maria Mercedes de Almeida Bendati, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 8
Published: over 7 years ago

10.3390/md18060313

A Metabolomics Exploration of the Sexual Phase in the Marine Diatom Pseudo-nitzschia multistriata
Cited by: 15
Author(s): Federica Fiorini, Camilla Borgonuovo, Maria Immacolata Ferrante, Mark Brönstrup
Software Mentions: 8
Published: almost 6 years ago

10.1098/rsta.2019.0366

Dynamics of organic matter and bacterial activity in the Fram Strait during summer and autumn
Cited by: 7
Author(s): Anabel von Jackowski, Julia Große, Eva‐Maria Nöthig, Anja Engel
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2021.728479

Cross-Sectional Study on the Gut Microbiome of Parkinson’s Disease Patients in Central China
Cited by: 11
Author(s): Liangwei Mao, Yu Zhang, Jing Tian, Ming Sang, Guimin Zhang, Yiming Zhou, Puqing Wang
Software Mentions: 8
Published: over 4 years ago

10.1186/s12864-020-6764-0

Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum
Cited by: 15
Author(s): Alice B. Dennis, Gabriel I. Ballesteros, Stéphanie Robin, Lukas Schrader, Jens Bast, Jan Berghöfer, Leo W. Beukeboom, Maya Belghazi, Anthony Bretaudeau, Jan Buellesbach, Elizabeth Cash, Dominique Colinet, Zoé Dumas, Mohammed Errbii, Patrizia Falabella, Jean‐Luc Gatti, Elzemiek Geuverink, Joshua D. Gibson, Corinne Hertaeg, Stefanie Hartmann, Emmanuelle Jacquin‐Joly, Mark Lammers, Blas I. Lavandero, Ina Lindenbaum, Lauriane Massardier-Galatà, Camille Meslin, Nicolas Montagné, Nina Pak, Marylène Poirié, Rosanna Salvia, Chris R. Smith, Denis Tagu, Sophie Tarès, Heiko Vogel, Tanja Schwander, Jean Simon, Christian C. Figueroa, Christoph Vorburger, Fabrice Legeai, Jürgen Gadau
Software Mentions: 8
Published: about 6 years ago

10.1016/j.ekir.2021.04.002

Anti-PLA2R1 Antibodies as Prognostic Biomarker in Membranous Nephropathy
Cited by: 16
Author(s): Anne-Els van de Logt, Joana Justino, Coralien H. Vink, Jan van den Brand, Hanna Dębiec, Gérard Lambeau, Jack F.M. Wetzels
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0197370

Immunity levels to poliovirus in Lao children and adults before the vaccine-derived poliovirus outbreak: A retrospective study
Cited by: 2
Author(s): Maude Pauly, Antony P. Black, Phonepaseuth Khampanisong, Phonethipsavanh Nouanthong, Judith M. Hübschen, Naphavanh Nanthavong, Kong Sayasinh, Prapan Jutavijittum, Bounthome Samountry, Anonh Xeuatvongsa, Sabine Diedrich, Claude P. Muller
Software Mentions: 8
Published: about 8 years ago

10.1371/journal.ppat.1006525

Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
Cited by: 53
Author(s): Olaya Rendueles, Marc García-Garcerá, Bertrand Néron, Marie Touchon, Eduardo P. C. Rocha
Software Mentions: 8
Published: almost 9 years ago

10.3390/genes12030444

Genome Analysis of Endotrypanum and Porcisia spp., Closest Phylogenetic Relatives of Leishmania, Highlights the Role of Amastins in Shaping Pathogenicity
Cited by: 9
Author(s): Amanda T S Albanaz, Evgeny S. Gerasimov, Jeffrey Jon Shaw, Jovana Sádlová, Julius Lukeš, Petr Volf, Frederik Opperdoes, Alexei Y. Kostygov, Anzhelika Butenko, Vyacheslav Yurchenko
Software Mentions: 8
Published: about 5 years ago

10.3390/microorganisms9061326

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Cited by: 5
Author(s): Thijs Van Gerrewey, Christophe El‐Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek‐Maarten Kerckhof, Nico Boon, Danny Geelen
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.pone.0185528

tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
Cited by: 38
Author(s): Alexander D. Becker, Bryan T. Grenfell
Software Mentions: 8
Published: over 8 years ago

10.1016/j.molcel.2019.01.009

Unravelling Intratumoral Heterogeneity through High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
Cited by: 195
Author(s): Alba Rodríguez-Meira, Gemma Buck, Sally-Ann Clark, Benjamin Povinelli, Verónica Alcolea, Eleni Louka, Simon J. McGowan, Angela Hamblin, Nikolaos Sousos, Nikolaos Barkas, Alice Giustacchini, Bethan Psaila, Sten Eirik W. Jacobsen, Supat Thongjuea, Adam J. Mead
Software Mentions: 8
Published: over 7 years ago

10.1371/journal.pone.0235451

Is YouTube promoting the exotic pet trade? Analysis of the global public perception of popular YouTube videos featuring threatened exotic animals
Cited by: 14
Author(s): Georgia Kate Moloney, Jonathan Tuke, Eleonora Dal Grande, Torben Nielsen, Anne‐Lise Chaber
Software Mentions: 8
Published: about 5 years ago

10.1007/s00787-020-01535-2

Visual search in ADHD, ASD and ASD + ADHD: overlapping or dissociating disorders?
Cited by: 13
Author(s): Divya Seernani, K. Damania, Chara Ioannou, N. Penkalla, Holger Hill, Tom Foulsham, Alan Kingstone, Nicola Anderson, Giuseppe Boccignone, Stephan Bender, N. Smyrnis, Monica Biscaldi, Ulrich W. Ebner‐Priemer, Christoph Klein
Software Mentions: 8
Published: about 6 years ago

10.3390/genes11010066

Genome Resolved Biogeography of Mamiellales
Cited by: 19
Author(s): Jade Leconte, L. Felipe Benites, Thomas Vannier, Patrick Wincker, Gwenaël Piganeau, Olivier Jaillon
Software Mentions: 8
Published: over 6 years ago

10.3390/genes10110937

NF-YA Overexpression in Lung Cancer: LUSC
Cited by: 28
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Diletta Dolfini, Roberto Mantovani
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-76868-8

Tree canopy arthropods have idiosyncratic responses to plant ecophysiological traits in a warm temperate forest complex
Cited by: 7
Author(s): Rudi C. Swart, Michael J. Samways, Francois Roets
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0176663

Comparing multi-criteria decision analysis and integrated assessment to support long-term water supply planning
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Author(s): Lisa Scholten, Max Maurer, Judit Lienert
Software Mentions: 8
Published: about 9 years ago

10.3389/fonc.2021.625007

Comprehensive Analysis of the Functions and Prognostic Value of RNA-Binding Proteins in Thyroid Cancer
Cited by: 7
Author(s): Yue Ma, Shi Yin, Xiaofeng Liu, Jing Hu, Ning Cai, Xiao-bei Zhang, Fu Li, Xuchen Cao, Yue Yu
Software Mentions: 8
Published: about 5 years ago

10.1093/conphys/coab047

An organizing feature of bumble bee life history: worker emergence promotes queen reproduction and survival in young nests
Cited by: 7
Author(s): Erica Sarro, Penglin Sun, Kerry E. Mauck, Damaris Rodriguez-Arellano, Naoaki Yamanaka, S. Hollis Woodard
Software Mentions: 8
Published: over 5 years ago

10.1038/srep35903

Genome-wide methylation analysis identified sexually dimorphic methylated regions in hybrid tilapia
Cited by: 59
Author(s): Zi Yi Wan, Jun Xia, Grace Lin, Le Wang, Valerie Chun Ling Lin, Gen Hua Yue
Software Mentions: 8
Published: over 9 years ago

10.1038/s41431-020-0699-4

Differences in local population history at the finest level: the case of the Estonian population
Cited by: 22
Author(s): Vasili Pankratov, Francesco Montinaro, Alena Kushniarevich, Georgi Hudjashov, Flora Jay, Lauri Saag, Rodrigo Flores, Davide Marnetto, Marten Seppel, Mart Kals, Urmo Võsa, Cristian Taccioli, Märt Möls, Lili Milani, Anto Aasa, Daniel J. Lawson, Tõnu Esko, Reedik Mägi, Luca Pagani, Andres Metspalu, Mait Metspalu
Software Mentions: 8
Published: almost 6 years ago

10.3390/microorganisms9061153

Variation in Human Milk Composition Is Related to Differences in Milk and Infant Fecal Microbial Communities
Cited by: 30
Author(s): Ryan M. Pace, Janet E. Williams, Bianca Robertson, Kimberly A. Lackey, Courtney L. Meehan, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela G. Kita, Linda J. Kvist, Gloria E. Otoo, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Mark A. McGuire, Lars Bode, Michelle K. McGuire
Software Mentions: 8
Published: about 5 years ago

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