cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2017.02414

Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural Field
Cited by: 48
Author(s): Bryan D. Emmett, Nicholas D. Youngblut, Daniel H. Buckley, Laurie E. Drinkwater
Software Mentions: 8
Published: almost 9 years ago

10.7717/peerj.8667

Element concentrations in pelagicSargassumalong the Mexican Caribbean coast in 2018-2019
Cited by: 78
Author(s): Rosa E. Rodríguez-Martínez, Priyadarsi D. Roy, Nuria Torrescano-Valle, Nancy Cabañillas-Terán, Silvia Carrillo‐Domínguez, Ligia Collado‐Vides, Marta García-Sánchez, Brigitta I. van Tussenbroek
Software Mentions: 8
Published: over 6 years ago

10.3390/biom10081179

Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs
Cited by: 2
Author(s): Narciso M. Quijada, Raúl Bodas, José M. Lorenzo, Stephan Schmitz‐Esser, David Rodrı́guez-Làzaro, Marta Hernández
Software Mentions: 8
Published: about 6 years ago

10.1186/s12862-017-0976-1

The effect of body size evolution and ecology on encephalization in cave bears and extant relatives
Cited by: 9
Author(s): Kristof Veitschegger
Software Mentions: 8
Published: over 9 years ago

10.3390/biom11050695

Variations in Gut Microbiome are Associated with Prognosis of Hypertriglyceridemia-Associated Acute Pancreatitis
Cited by: 10
Author(s): Xiaomin Hu, Liang Gong, Ronggang Zhou, Ziying Han, Ji Li, Yan Zhang, Shuyang Zhang, Dong Wu
Software Mentions: 8
Published: over 5 years ago

10.1186/s12859-020-3389-x

ushr: Understanding suppression of HIV in R
Cited by: 3
Author(s): Sinead E. Morris, Luise Dziobek-Garrett, Andrew J. Yates
Software Mentions: 8
Published: over 6 years ago

10.7717/peerj.10682

Identification of the hub genes in gastric cancer through weighted gene co-expression network analysis
Cited by: 7
Author(s): Chunyang Li, Haopeng Yu, Yajing Sun, Xiaoxi Zeng, Wei Zhang
Software Mentions: 8
Published: over 5 years ago

10.1186/s12862-021-01890-x

Experimental increase of worker diversity benefits brood production in ants
Cited by: 3
Author(s): Marina N. Psalti, Dustin Gohlke, Romain Libbrecht
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0257471

Deciphering the low abundance microbiota of presumed aseptic hip and knee implants
Cited by: 2
Author(s): Charles Carr, Hannah Wilcox, Jeremy P. Burton, Sharanya Menon, Kait F. Al, David B. O’Gorman, Brent A. Lanting, Edward M. Vasarhelyi, Michael E. Neufeld, Matthew G. Teeter
Software Mentions: 8
Published: about 5 years ago

10.3390/biomedicines9091253

Alterations in Circulating Monocytes Predict COVID-19 Severity and Include Chromatin Modifications Still Detectable Six Months after Recovery
Cited by: 24
Author(s): Alberto Utrero‐Rico, Cecilia González-Cuadrado, Marta Chivite-Lacaba, Óscar Cabrera-Marante, Rocío Laguna‐Goya, Patricia Almendro-Vázquez, Carmen Díaz-Pedroche, María Ruiz-Ruigómez, Antonio Lalueza, María Dolores Folgueira, Enrique Vázquez, Ana Quintas, Marcos J. Berges-Buxeda, Moisés Martín-Rodriguez, Ana Dopazo, Antonio Serrano-Hernández, Estela Paz‐Artal, Estela Paz‐Artal
Software Mentions: 8
Published: about 5 years ago

10.3389/fgene.2019.01143

Identification of a Tumor Microenvironment-Related Eight-Gene Signature for Predicting Prognosis in Lower-Grade Gliomas
Cited by: 24
Author(s): Jun Su, Wenyong Long, Qianquan Ma, Kai Xiao, Li Yang, Qian Xiao, Gang Peng, Jian Yuan, Qing Liu
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0217804

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
Cited by: 12
Author(s): Kirsten Grond, Julie Perreau, Wesley T. Loo, A. James Spring, Colleen M. Cavanaugh, Sarah M. Hird
Software Mentions: 8
Published: over 7 years ago

10.1371/journal.pone.0100570

LADES: A Software for Constructing and Analyzing Longitudinal Designs in Biomedical Research
Cited by: 0
Author(s): Alan Vázquez-Alcocer, Daniel Ladislao Garzón-Cortes, Rosa Sánchez‐Casas
Software Mentions: 8
Published: over 12 years ago

10.1371/journal.pone.0239436

Seasonal and ontogenetic variation of whiting diet in the Eastern English Channel and the Southern North Sea
Cited by: 7
Author(s): Charles-André Timmerman, Paul Marchal, Margaux Denamiel, Clémence Couvreur, Pierre Cresson
Software Mentions: 8
Published: about 6 years ago

10.1098/rspb.2020.1158

Parasite infection disrupts escape behaviours in fish shoals
Cited by: 3
Author(s): Nicolle Demandt, Marit Praetz, Ralf H. J. M. Kurvers, Jens Krause, Joachim Kurtz, Jörn P. Scharsack
Software Mentions: 8
Published: almost 6 years ago

10.3389/fgene.2020.568223

Taxonomic Novelty and Distinctive Genomic Features of Hot Spring Cyanobacteria
Cited by: 32
Author(s): Jaime Alcorta, Tomás Alarcón-Schumacher, Óscar Rivero Salgado, Beatriz Dı́ez
Software Mentions: 8
Published: almost 6 years ago

10.7717/peerj.8807

Evaluation of δ15N analysis to trace the origin of Diaphorina citri (Hemiptera: Liviidae) to citrus orchard fertilization management
Cited by: 1
Author(s): Francesc Gómez-Marco, Andrew Yoshimoto, W. Evan Braswell, Richard Stouthamer
Software Mentions: 8
Published: over 6 years ago

10.7717/peerj.8303

TRANSPARENT TESTA GLABRA 1 participates in flowering time regulation inArabidopsis thaliana
Cited by: 5
Author(s): Barbara A M Paffendorf, Rawan Qassrawi, Andrea M Meys, Laura Trimborn, Andrea Schrader
Software Mentions: 8
Published: almost 7 years ago

10.1017/S1368980019003239

Four decades of socio-economic inequality and secular change in the physical growth of Guatemalans
Cited by: 14
Author(s): Liina Mansukoski, William Johnson, Katherine Brooke‐Wavell, J. Andres Galvez-Sobral, L.R. Furlan, Tim J. Cole, Barry Bogin
Software Mentions: 8
Published: almost 7 years ago

10.1186/s40168-019-0748-9

Microbial communities of the house fly Musca domestica vary with geographical location and habitat
Cited by: 58
Author(s): Rahel Park, Maria C. Dzialo, Stijn Spaepen, Donat Nsabimana, Kim Gielens, Herman Devriese, Sam Crauwels, Raúl Y. Tito, Jeroen Raes, Bart Lievens, Kevin J. Verstrepen
Software Mentions: 8
Published: almost 7 years ago

10.1186/s12885-021-08322-5

A metabolism-related 4-lncRNA prognostic signature and corresponding mechanisms in intrahepatic cholangiocarcinoma
Cited by: 12
Author(s): Wei Zou, Zizheng Wang, Fei Wang, Lincheng Li, Rong Liu, Minggen Hu
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0122599

Ex Situ Conservation Priorities for the Wild Relatives of Potato (Solanum L. Section Petota)
Cited by: 73
Author(s): Nora P. Castañeda‐Álvarez, Stef de Haan, Henry Juárez, Colin K. Khoury, Harold A. Achicanoy, Chrystian C. Sosa, Vivian Bernau, Alberto Salas, Bettina Heider, Reinhard Simon, Nigel Maxted, David M. Spooner
Software Mentions: 8
Published: over 11 years ago

10.1186/s12863-020-00936-1

Separating two tightly linked species-defining phenotypes in Bactrocera with hybrid recombinant analysis
Cited by: 7
Author(s): Heng Lin Yeap, Siu Fai Lee, Freya Robinson, Roslyn Mourant, J. A. Sved, Michael Frommer, Alexie Papanicolaou, Owain Edwards, John G. Oakeshott
Software Mentions: 8
Published: almost 6 years ago

10.1155/2021/8859996

Potential Prognostic Biomarkers of Lung Adenocarcinoma Based on Bioinformatic Analysis
Cited by: 17
Author(s): Jili Hou, Yong Cheng
Software Mentions: 8
Published: almost 6 years ago

10.18632/aging.102513

Daily decrease of post-operative alpha-fetoprotein by 9% discriminates prognosis of HCC: A multicenter retrospective study
Cited by: 6
Author(s): Pei‐Yun Zhou, Chao‐Ping Yang, Zheng Tang, Yong Yi, Wei‐Ren Liu, Min Tian, Huang Ji, Wei Gan, Xi‐Fei Jiang, Liu Gao, Han Wang, Chenyang Tao, Yuan Fang, Wei‐Feng Qu, Cheng Zhou, Ruijuan Guan, Bao-Ye Sun, Yu‐Fu Zhou, Shushu Song, Zhen‐Bin Ding, Yuan‐Fei Peng, Zhi Dai, Jian Zhou, Jia Fan, Guozhong Gong, Ying‐Hong Shi, Shuang–Jian Qiu
Software Mentions: 8
Published: almost 7 years ago

10.1186/s12885-021-08012-2

Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma
Cited by: 5
Author(s): Haitao Chen, Yueying Li, Shu–Yuan Xiao, Jingyi Guo
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.11983

Identifying transcript 5′ capped ends in Plasmodium falciparum
Cited by: 2
Author(s): Philip Shaw, Jittima Piriyapongsa, Pavita Kaewprommal, Chayaphat Wongsombat, Chadapohn Chaosrikul, Krirkwit Teeravajanadet, Manon Boonbangyang, Chairat Uthaipibull, Sumalee Kamchonwongpaisan, Sissades Tongsima
Software Mentions: 8
Published: about 5 years ago

10.1093/braincomms/fcab141

Amyotrophic lateral sclerosis transcriptomics reveals immunological effects of low-dose interleukin-2
Cited by: 11
Author(s): Ilaria Giovannelli, Nadhim Bayatti, A.G. Brown, Dennis Wang, Marius Mickunas, William Camu, Jean-Luc Veyrune, Christine Payan, Cecilia Garlanda, Massimo Locati, Raul Juntas-Moralès, Nicolas Pageot, Andrea Malaspina, Ulf Andréasson, Carey Suehs, Safa Saker, Christophe Masseguin, John de Vos, Henrik Zetterberg, Ammar Al‐Chalabi, P. Nigel Leigh, Timothy Tree, G. Bensimon, Paul R. Heath, Pamela J. Shaw, Janine Kirby
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0245639

Are we missing the forest for the trees? Conspecific negative density dependence in a temperate deciduous forest
Cited by: 3
Author(s): Kathryn E. Barry, Stefan A. Schnitzer
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.10696

Rapid relative increase of crustose coralline algae following herbivore exclusion in a reef of El Salvador
Cited by: 1
Author(s): Xochitl E. Elías Ilosvay, Johanna Segovia, Sebastian C. A. Ferse, Walter Ernesto Elias, Christian Wild
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0224879

Long non-coding RNAs and latent HIV – A search for novel targets for latency reversal
Cited by: 17
Author(s): Wim Trypsteen, Cory H. White, Amey Mukim, Celsa A. Spina, Ward De Spiegelaere, Steve Lefever, Vicente Planelles, Alberto Bosque, Christopher H. Woelk, Linos Vandekerckhove, Nadejda Beliakova-Bethell
Software Mentions: 8
Published: almost 7 years ago

10.1098/rspb.2017.0905

The evolution of dual meat and milk cattle husbandry in Linearbandkeramik societies
Cited by: 43
Author(s): Rosalind Gillis, Lenka Kovačíková, Stéphanie Bréhard, Émilie Guthmann, Ivana Vostrovská, Hana Nohálová, Rose‐Marie Arbogast, László Domboróczki, Joachim Pechtl, Alexander Anders, Arkadiusz Marciniak, Anne Tresset, Jean‐Denis Vigne
Software Mentions: 8
Published: about 9 years ago

10.1107/S2059798318004576

KAMO: towards automated data processing for microcrystals
Cited by: 174
Author(s): Keitaro Yamashita, Kunio Hirata, Masaki Yamamoto
Software Mentions: 8
Published: over 8 years ago

10.3390/microorganisms9071454

First Evidence That Nematode Communities in Deadwood Are Related to Tree Species Identity and to Co-Occurring Fungi and Prokaryotes
Cited by: 8
Author(s): Julia Moll, Friederike Roy, Claus Bässler, Jacob Heilmann‐Clausen, Martin Hofrichter, Harald Kellner, Doris Krabel, Jan Henrik Schmidt, François Buscot, Björn Hoppe
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2019.02761

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition
Cited by: 6
Author(s): Thomas Hartinger, Joan E. Edwards, Ruth Gómez Expósito, Hauke Smidt, Cajo J. F. ter Braak, N. Gresner, K. H. Südekum
Software Mentions: 8
Published: almost 7 years ago

10.3390/ani10061047

A Systematic Review Comparing Experimental Design of Animal and Human Methotrexate Efficacy Studies for Rheumatoid Arthritis: Lessons for the Translational Value of Animal Studies
Cited by: 8
Author(s): Cathalijn Leenaars, Frans Stafleu, David De Jong, Maikel van Berlo, Tijmen Geurts, Tineke Coenen-de Roo, Jan–Bas Prins, Rosalie W.M. Kempkes, Janneke Elzinga, André Bleich, Rob de Vries, F.L.B. Meijboom, Merel Ritskes‐Hoitinga
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-018-23630-w

The Anti-Cancer Multikinase Inhibitor Sorafenib Impairs Cardiac Contractility by Reducing Phospholamban Phosphorylation and Sarcoplasmic Calcium Transients
Cited by: 21
Author(s): Christopher Schneider, Markus Wallner, Ewald Kolesnik, Viktoria Herbst, Heinrich Mächler, Martin Pichler, Dirk von Lewinski, Simon Sedej, Peter P. Rainer
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pone.0234537

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities
Cited by: 0
Author(s): Boahemaa Adu-Oppong, Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-83888-5

A novel approach for microRNA in situ hybridization using locked nucleic acid probes
Cited by: 6
Author(s): Isabella Worlewenut Paulsen, Micheal Bzorek, John Elmerdahl Olsen, Birgitte Grum-Schwensen, Jesper T. Troelsen, Ole Birger Pedersen
Software Mentions: 8
Published: over 5 years ago

10.1186/s13058-019-1123-2

Separation of breast cancer and organ microenvironment transcriptomes in metastases
Cited by: 33
Author(s): Mohammad A. Alzubi, Tia H. Turner, Amy L. Olex, Sahib S. Sohal, Nicholas P. Tobin, Susana Garcia Recio, Jonas Bergh, Thomas Hatschek, Joel S. Parker, Carol A. Sartorius, Charles M. Perou, Mikhail G. Dozmorov, J. Chuck Harrell
Software Mentions: 8
Published: over 7 years ago

10.3390/ani10050889

Combination of Bacillus licheniformis and Salinomycin: Effect on the Growth Performance and GIT Microbial Populations of Broiler Chickens
Cited by: 15
Author(s): Jacek Trela, Bartosz Kierończyk, Veerle Hautekiet, Damian Józefiak
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-88139-1

Age biases the judgment rather than the perception of an ambiguous figure
Cited by: 1
Author(s): Ambroos Brouwer, Xuxi Jin, Aisha Humaira Waldi, Steven Verheyen
Software Mentions: 8
Published: over 5 years ago

10.1186/s12889-021-10979-3

Associations of meeting 24-h movement guidelines with stress and self-rated health among adults: is meeting more guidelines associated with greater benefits?
Cited by: 16
Author(s): Kaja Kastelic, Željko Pedišić, Dean Lipovac, Nika Kastelic, Sitong Chen, Nejc Šarabon
Software Mentions: 8
Published: over 5 years ago

10.3390/genes10110937

NF-YA Overexpression in Lung Cancer: LUSC
Cited by: 28
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Diletta Dolfini, Roberto Mantovani
Software Mentions: 8
Published: almost 7 years ago

10.7150/jca.49175

Biological functions and prognostic value of RNA Binding Proteins in clear cell Renal Cell Carcinoma
Cited by: 6
Author(s): Zhenpeng Zhu, Anbang He, Lanruo Lin, Chunru Xu, Tianyu Cai, Lin Jian
Software Mentions: 8
Published: almost 7 years ago

10.1186/s40478-017-0421-0

Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice
Cited by: 5
Author(s): Anita Lakatos, Natalie R.S. Goldberg, Mathew Blurton‐Jones
Software Mentions: 8
Published: over 9 years ago

10.1172/jci.insight.130510

Asymmetric cell division promotes therapeutic resistance in glioblastoma stem cells
Cited by: 19
Author(s): Masahiro Hitomi, Anastasia Chumakova, Daniel J. Silver, Arnon Møldrup Knudsen, William Pontius, Shaun Murphy, Neha Anand, Bjarne Winther Kristensen, Justin D. Lathia
Software Mentions: 8
Published: over 5 years ago

10.1093/eurheartj/ehaa756

Midlife blood pressure is associated with the severity of white matter hyperintensities: analysis of the UK Biobank cohort study
Cited by: 56
Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: almost 6 years ago

10.1007/s00787-020-01535-2

Visual search in ADHD, ASD and ASD + ADHD: overlapping or dissociating disorders?
Cited by: 13
Author(s): Divya Seernani, K. Damania, Chara Ioannou, N. Penkalla, Holger Hill, Tom Foulsham, Alan Kingstone, Nicola Anderson, Giuseppe Boccignone, Stephan Bender, N. Smyrnis, Monica Biscaldi, Ulrich W. Ebner‐Priemer, Christoph Klein
Software Mentions: 8
Published: over 6 years ago

10.1186/s41065-021-00201-0

Identification and validation of hub genes of synovial tissue for patients with osteoarthritis and rheumatoid arthritis
Cited by: 10
Author(s): Yanzhi Ge, Zuxiang Chen, Yanbin Fu, Xue Xiao, Haipeng Xu, Peijian Tong, Li Zhou
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-021-86529-z

Impact of land cover and landfills on the breeding effect and nest occupancy of the white stork in Poland
Cited by: 12
Author(s): Joanna T. Białas, Łukasz Dylewski, Andrzej Dylik, Tomasz Janiszewski, Ireneusz Kaługa, Tomek Królak, Robert Kruszyk, Krzysztof Pawlukojć, Zuzanna Pestka, M. Polakowski, Adam Zbyryt, Marcin Tobółka
Software Mentions: 8
Published: over 5 years ago

10.18632/aging.202515

Cell differentiation trajectory predicts patient potential immunotherapy response and prognosis in gastric cancer
Cited by: 18
Author(s): Renshen Xiang, Yuping Rong, Yuhang Ge, Wei Song, Jun Ren, Tao Fu
Software Mentions: 8
Published: over 5 years ago

10.1080/19490976.2021.1966263

Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen Citrobacter rodentium
Cited by: 28
Author(s): Mareike Neumann, Alex Steimle, Erica T. Grant, Mathis Wolter, Amy Parrish, Stéphanie Willième, Dirk Brenner, Eric C. Martens, Mahesh S. Desai
Software Mentions: 8
Published: almost 6 years ago

10.18632/aging.202670

A novel panel based on immune infiltration and tumor mutational burden for prognostic prediction in hepatocellular carcinoma
Cited by: 5
Author(s): Chengzhi Xie, Hewei Wu, Tao Pan, Xingrong Zheng, Xiaoàn Yang, Genglin Zhang, Yunwen Lian, Jiaxin Lin, Liang Peng
Software Mentions: 8
Published: over 5 years ago

10.1186/s13072-019-0305-6

CGGBP1 regulates CTCF occupancy at repeats
Cited by: 12
Author(s): Divyesh Patel, Manthan Patel, Subhamoy Datta, Uma Singh
Software Mentions: 8
Published: about 7 years ago

10.1093/dnares/dsaa017

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
Cited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: about 6 years ago

10.3390/vaccines9030217

HIV-Exposed Seronegative Sex Workers Express Low T-Cell Activation and an Intact Ectocervical Tissue Microenvironment
Cited by: 2
Author(s): Maria Röhl, Annelie Tjernlund, Julie Lajoie, Gabriella Edfeldt, Frideborg Bradley, Sofia Bergström, Vilde Kaldhusdal, Alexandra Åhlberg, Anna Månberg, Kenneth Omollo, Geneviève Boily-Larouche, Muhammad Asghar, Douglas S. Kwon, Julius Oyugi, Joshua Kimani, Peter Nilsson, Keith R. Fowke, Kristina Broliden
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0249691

Profiling DNA break sites and transcriptional changes in response to contextual fear learning
Cited by: 25
Author(s): Ryan Stott, Oleg Kritsky, Li‐Huei Tsai
Software Mentions: 8
Published: over 5 years ago

10.1186/s12935-020-01560-w

Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
Cited by: 19
Author(s): Cankun Zhou, Chaomei Li, Fangli Yan, Yuhua Zheng
Software Mentions: 8
Published: almost 6 years ago

10.1186/s12870-019-2182-3

A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference
Cited by: 9
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, León A. Bravo
Software Mentions: 8
Published: over 6 years ago

10.18632/aging.202486

Constructing a ceRNA-immunoregulatory network associated with the development and prognosis of human atherosclerosis through weighted gene co-expression network analysis
Cited by: 11
Author(s): Yaozhong Liu, Na Liu, Qiming Liu
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0197370

Immunity levels to poliovirus in Lao children and adults before the vaccine-derived poliovirus outbreak: A retrospective study
Cited by: 2
Author(s): Maude Pauly, Antony P. Black, Phonepaseuth Khampanisong, Phonethipsavanh Nouanthong, Judith M. Hübschen, Naphavanh Nanthavong, Kong Sayasinh, Prapan Jutavijittum, Bounthome Samountry, Anonh Xeuatvongsa, Sabine Diedrich, Claude P. Muller
Software Mentions: 8
Published: over 8 years ago

10.3389/fmicb.2021.627437

A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems
Cited by: 4
Author(s): Gilda Varliero, Alexandre M. Anesio, Gary Barker
Software Mentions: 8
Published: about 5 years ago

10.1186/s12915-017-0379-1

Time-resolved dual transcriptomics reveal early induced Nicotiana benthamiana root genes and conserved infection-promoting Phytophthora palmivora effectors
Cited by: 55
Author(s): Édouard Evangelisti, Anna Gogleva, Thomas Hainaux, Mehdi Doumane, Frej Tulin, Clément Quan, T. S. Yunusov, Kévin Floch, Sebastián Schornack
Software Mentions: 8
Published: over 9 years ago

10.1093/gigascience/giz004

The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches
Cited by: 103
Author(s): Darshan B. Dhakan, Abhijit Maji, Ashok Sharma, Rituja Saxena, Joby Pulikkan, Tony Grace, Andrés Gómez, Joy Scaria, Katherine R. Amato, Vineet K. Sharma
Software Mentions: 8
Published: over 7 years ago

10.3390/e23060695

Knowledge Discovery from Medical Data and Development of an Expert System in Immunology
Cited by: 3
Author(s): Małgorzata Pac, Irina Mikutskaya, Jan J. Mulawka
Software Mentions: 8
Published: over 5 years ago

10.1093/gigascience/giab062

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
Cited by: 16
Author(s): Lukas M. Weber, Ariel A. Hippen, Peter Hickey, Kristofer C. Berrett, Jason Gertz, Jennifer A. Doherty, Casey S. Greene, Stephanie C. Hicks
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0203346

Feasibility of developing reliable gene expression modules from FFPE derived RNA profiled on Affymetrix arrays
Cited by: 3
Author(s): Vinu José, Debora Fumagalli, Françoise Rothé, Samira Majjaj, Sherene Loi, Stefan Michiels, Christos Sotiriou
Software Mentions: 8
Published: about 8 years ago

10.3390/e23010072

Unraveling of a Strongly Correlated Dynamical Network of Residues Controlling the Permeation of Potassium in KcsA Ion Channel
Cited by: 2
Author(s): Salvatore M. Cosseddu, Eunju Julia Choe, I. A. Khovanov
Software Mentions: 8
Published: almost 6 years ago

10.15252/msb.20188238

Unraveling mitotic protein networks by 3D multiplexed epitope drug screening
Cited by: 1
Author(s): Lorenz Maier, Stefan M. Kallenberger, Katharina Jechow, Marcel Waschow, Roland Eils, Christian Conrad
Software Mentions: 8
Published: about 8 years ago

10.1371/journal.pone.0235451

Is YouTube promoting the exotic pet trade? Analysis of the global public perception of popular YouTube videos featuring threatened exotic animals
Cited by: 14
Author(s): Georgia Kate Moloney, Jonathan Tuke, Eleonora Dal Grande, Torben Nielsen, Anne‐Lise Chaber
Software Mentions: 8
Published: over 5 years ago

10.1186/s40795-021-00428-0

Weight and mid-upper arm circumference gain velocities during treatment of young children with severe acute malnutrition, a prospective study in Uganda
Cited by: 4
Author(s): Jolly G. K. Kamugisha, Betty Lanyero, Nicolette Nabukeera-Barungi, Harriet Nambuya-Lakor, Christian Ritz, Christian Mølgaard, Kim F. Michaelsen, André Briend, Ezekiel Mupere, Henrik Friis, Benedikte Grenov
Software Mentions: 8
Published: over 5 years ago

10.3389/fcell.2021.710207

Immunological Value of Prognostic Signature Based on Cancer Stem Cell Characteristics in Hepatocellular Carcinoma
Cited by: 14
Author(s): Qianhui Xu, Hao Xu, Shaohuai Chen, Wen Huang
Software Mentions: 8
Published: about 5 years ago

10.1186/s12864-020-6534-z

Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni
Cited by: 17
Author(s): Lijun Lu, Eric S. Loker, Si-Ming Zhang, Sarah Kay Buddenborg, Lijing Bu
Software Mentions: 8
Published: over 6 years ago

10.1186/s12859-016-1235-y

BTR: training asynchronous Boolean models using single-cell expression data
Cited by: 62
Author(s): Chee Lim, Huange Wang, Steven Woodhouse, Nir Piterman, Lorenz Wernisch, Jasmin Fisher, Berthold Göttgens
Software Mentions: 8
Published: about 10 years ago

10.3389/fmicb.2016.00517

Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom
Cited by: 57
Author(s): Carina Bunse, Mireia Bertos‐Fortis, Ingrid Sassenhagen, Sirje Sildever, Conny Sjöqvist, Anna Godhe, Susanna Gross, Anke Kremp, Inga Lips, Nina Lundholm, Karin Rengefors, Josefin Sefbom, Jarone Pinhassi, Catherine Legrand
Software Mentions: 8
Published: over 10 years ago

10.1186/s12859-021-04124-5

Popularity and performance of bioinformatics software: the case of gene set analysis
Cited by: 21
Author(s): Chengshu Xie, Shaurya Jauhari, Antonio M. Mora
Software Mentions: 8
Published: over 5 years ago

10.1080/16549716.2018.1440783

Health Equity Assessment Toolkit Plus (HEAT Plus): software for exploring and comparing health inequalities using uploaded datasets
Cited by: 42
Author(s): Ahmad Reza Hosseinpoor, Anne Schlotheuber, Devaki Nambiar, Zev Ross
Software Mentions: 8
Published: over 8 years ago

10.1002/dad2.12066

Semantic loss marks early Alzheimer's disease‐related neurodegeneration in older adults without dementia
Cited by: 20
Author(s): Jet M.J. Vonk, Vincent Bouteloup, Jean‐François Mangin, Bruno Dubois, ‪Frederic Blanc‬, Audrey Gabelle, Mathieu Ceccaldi, Cédric Annweiler, Pierre Krolak‐Salmon, Cathérine Belin, Thérèse Rivasseau‐Jonveaux, Adrien Julian, François Sellal, Éloi Magnin, Marie Chupin, Marie‐Odile Habert, Geneviève Chêne, Carole Dufouil
Software Mentions: 8
Published: almost 7 years ago

10.3389/fpsyg.2021.601679

Computational Language Assessments of Harmony in Life — Not Satisfaction With Life or Rating Scales — Correlate With Cooperative Behaviors
Cited by: 7
Author(s): Oscar Kjell, Daiva Daukantaité, Sverker Sikström
Software Mentions: 8
Published: over 5 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: about 6 years ago

10.1038/s41597-020-00784-9

COVIDiSTRESS Global Survey dataset on psychological and behavioural consequences of the COVID-19 outbreak
Cited by: 64
Author(s): Yuki Yamada, Dominik-Borna Ćepulić, Tao Coll-Martín, Stéphane Debove, Guillaume Gautreau, Hyemin Han, Jesper Rasmussen, Thao Phuong Tran, Giovanni A. Travaglino, Angélique M. Blackburn, Boullu Loïs, Mila Bujić, Grace Byrne, Marjolein C.J. Caniëls, Ivan Flis, Marta Kowal, Nikolay R. Rachev, Vicenta Reynoso-Alcántara, Oulmann Zerhouni, Oli Ahmed, Rizwana Amin, Sibele Aquino, João Carlos Areias, John Jamir Benzon R. Aruta, Dastan Bamwesigye, Jozef Bavoľár, Andrew R. Bender, Pratik N. Bhandari, Tuba Bircan, Hüseyin Çakal, Tereza Capelos, Jiří Čeněk, Brendan Ch’ng, Fang-Yu Chen, Stavroula Chrona, Carlos C. Contreras‐Ibáñez, Pablo Sebastián Correa, Irène Cristofori, Wilson Cyrus-Lai, Guillermo Delgado‐García, Eliane Deschrijver, Carlos Díaz, İlknur Dilekler, Vilius Dranseika, Dmitrii Dubrov, Kristina Eichel, Eda Ermağan Çağlar, Rebekah Gelpí, Rubén Flores González, Amanda Griffin, Moh. Abdul Hakim, Krzysztof Hanusz, Yuen Wan Ho, Dayana Hristova, Barbora Hubená, Keiko Ihaya, Gözde İkizer, Md. Nurul Islam, Alma Jeftić, Shruti Jha, Fernanda Pérez-Gay Juárez, Pavol Kačmár, Kalina Nikolova Kalinova, Phillip S. Kavanagh, Mehmet Kosa, Karolina Koszałkowska, Raisa Kumaga, David Lacko, Yookyung Lee, Antonio G. Lentoor, Gabriel A. De Leon, Shiang-Yi Lin, Samuel Lins, Claudio Rafael Castro López, Agnieszka Ewa Łyś, Samkelisiwe Mahlungulu, Tsvetelina Makaveeva, Salomé Mamede, Silvia Mari, Tiago Azevedo Marot, Liz Martinez, Dar Meshi, Débora Jeanette Mola, Sara Morales-Izquierdo, Arian Musliu, Priyanka A. Naidu, Arooj Najmussaqib, Jean Carlos Natividade, Steve Nebel, Jana Nezkusilová, Irina Nikolova, Manuel Ninaus, Valdas Noreika, María Victoria Ortiz, Daphna Hausman Ozery, Daniel Pankowski, T Pennato, Martin Pírko, Lotte Pummerer, Cecilia Reyna, Eugenia Romano, Hafize Sahin, Aybegum Memisoglu Sanli, Gülden Sayılan, Alessia Scarpaci, Cristina Sechi, Maor Shani, Aya Shata, Pilleriin Sikka, Nidhi Sinha, Sabrina Stöckli, Anna Studzińska, Emilija Sungailaite, Zea Szebeni, Benjamin Tag, Mihaela Ţăranu, Franco Tisocco, Jarno Tuominen, Fidan Turk, Muhammad Kamal Uddin, Ena Uzelac, Sara Vestergren, Roosevelt Vilar, Austin Horng-En Wang, J. Noël West, Charles Wu, Teodora Yaneva, Yao‐Yuan Yeh, Andreas Lieberoth
Software Mentions: 8
Published: almost 6 years ago

10.3390/cancers12010045

N-Terminal Truncated Myb with New Transcriptional Activity Produced Through Use of an Alternative MYB Promoter in Salivary Gland Adenoid Cystic Carcinoma
Cited by: 11
Author(s): Candace A. Frerich, Hailey N. Sedam, Huining Kang, Yoshitsugu Mitani, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 8
Published: almost 7 years ago

10.1155/2021/8892479

PDZ Binding Kinase/T-LAK Cell-Derived Protein Kinase Plays an Oncogenic Role and Promotes Immune Escape in Human Tumors
Cited by: 4
Author(s): Tingting Feng, Yan Zhang, Sunbin Ling, Chenyang Xu, Yingqi Lyu, Tingting Lu, Xinyuan Liu, Ying Liu, Yiming Wan, Zhong Huang, Dan Su
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-018-36696-3

Immune cell characteristics and cytokine responses in adult HIV-negative tuberculous meningitis: an observational cohort study
Cited by: 23
Author(s): Arjan van Laarhoven, Sofiati Dian, Suzanne van Dorp, Feby Purnama, Valerie A C M Koeken, Emira Diandini, Fitria Utami, Resvi Livia, Lika Apriani, Edwin Ardiansyah, Rob ter Horst, Mihai G. Netea, Tri Hanggono Achmad, Philip C. Hill, Rovina Ruslami, Bachti Alisjahbana, James E. Ussher, Agnes Rengga Indrati, Ayesha Verrall, Ahmad Rizal Ganiem, Reinout van Crevel
Software Mentions: 8
Published: over 7 years ago

10.3389/fphys.2021.660906

Genome-Wide DNA Methylation Changes Associated With High-Altitude Acclimatization During an Everest Base Camp Trek
Cited by: 6
Author(s): Ainash Childebayeva, Taylor Harman, Julien Weinstein, Trevor A. Day, Tom D. Brutsaert, Abigail W. Bigham
Software Mentions: 8
Published: over 5 years ago

10.3389/fmolb.2021.657087

N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer Prognosis
Cited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: over 5 years ago

10.3390/cancers13061212

Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple Myeloma
Cited by: 3
Author(s): Ashwini Kumar, Sadiksha Adhikari, Matti Kankainen, Caroline A. Heckman
Software Mentions: 8
Published: over 5 years ago

10.7554/eLife.64513

Chondrocytes in the resting zone of the growth plate are maintained in a Wnt-inhibitory environment
Cited by: 25
Author(s): Shawn A Hallett, Yuki Matsushita, Wanida Ono, Naoko Sakagami, Koji Mizuhashi, Nicha Tokavanich, Mizuki Nagata, Annabelle Zhou, Takao Hanabusa, Henry M. Kronenberg, Noriaki Ono
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pbio.3001007

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
Cited by: 180
Author(s): Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas
Software Mentions: 8
Published: almost 6 years ago

10.18632/oncotarget.14443

Investigating the utility of human melanoma cell lines as tumour models
Cited by: 48
Author(s): Krista Vincent, Lynne-Marie Postovit
Software Mentions: 8
Published: almost 10 years ago

10.3389/fmolb.2019.00005

Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in Glioblastoma
Cited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: over 7 years ago

10.3390/microorganisms9061326

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Cited by: 5
Author(s): Thijs Van Gerrewey, Christophe El‐Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek‐Maarten Kerckhof, Nico Boon, Danny Geelen
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2020.01045

Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities
Cited by: 23
Author(s): Andrea Cavalieri, Friedhelm Bak, Adriana M. García-Lemos, Jacob Weiner, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0109917

Adjacent Habitat Influence on Stink Bug (Hemiptera: Pentatomidae) Densities and the Associated Damage at Field Corn and Soybean Edges
Cited by: 67
Author(s): P. Dilip Venugopal, Peter L. Coffey, Galen P. Dively, William O. Lamp
Software Mentions: 8
Published: about 12 years ago

10.1016/j.immuni.2019.02.006

Anti-commensal IgG Drives Intestinal Inflammation and Type 17 Immunity in Ulcerative Colitis
Cited by: 121
Author(s): Tomas Castro‐Dopico, Thomas W. Dennison, John R. Ferdinand, Rebeccah J. Mathews, Aaron Fleming, Dean Clift, Benjamin J Stewart, Chenzhi Jing, Konstantina Strongili, Larisa I. Labzin, Edward J M Monk, Kourosh Saeb‐Parsy, Clare E. Bryant, Simon Clare, Miles Parkes, Menna R. Clatworthy
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-019-44597-2

NOMePlot: analysis of DNA methylation and nucleosome occupancy at the single molecule
Cited by: 3
Author(s): Francisco Requena, Helena G Asenjo, Guillermo Barturen, Jordi Martorell-Marugán, Pedro Carmona-Sáez, David Landeira
Software Mentions: 8
Published: over 7 years ago

10.1161/HYPERTENSIONAHA.121.17403

Blood Pressure Determinants of Cerebral White Matter Hyperintensities and Microstructural Injury: UK Biobank Cohort Study
Cited by: 13
Author(s): Karolina Wartolowska, Alastair Webb
Software Mentions: 8
Published: about 5 years ago

10.1186/s13148-021-01144-z

Whole-genome methylation analysis of testicular germ cells from cryptozoospermic men points to recurrent and functionally relevant DNA methylation changes
Cited by: 9
Author(s): Sara Di Persio, Elsa Leitão, Marius Wöste, Tobias Tekath, Jann‐Frederik Cremers, Martin Dugas, Xiaolin Liao, Gerd Meyer zu Hörste, Sabine Kliesch, Sandra Laurentino, Nina Neuhaus, Bernhard Horsthemke
Software Mentions: 8
Published: about 5 years ago

10.3389/fpls.2018.01632

Integrated QTL and eQTL Mapping Provides Insights and Candidate Genes for Fatty Acid Composition, Flowering Time, and Growth Traits in a F2 Population of a Novel Synthetic Allopolyploid Brassica napus
Cited by: 22
Author(s): Ruijuan Li, Kwangju Jeong, John Davis, Seungmo Kim, Soonbong Lee, Richard W. Michelmore, Shinje Kim, Julin Maloof
Software Mentions: 8
Published: almost 8 years ago

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