Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: ggplot2
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
48 versions
Latest release: about 1 year ago
4,921 dependent packages
2,865,232 downloads last month
Papers Mentioning ggplot2 11,441
10.3389/fmicb.2020.01045
Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial CommunitiesCited by: 23
Author(s): Andrea Cavalieri, Friedhelm Bak, Adriana M. García-Lemos, Jacob Weiner, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 8
Published: over 4 years ago
10.3390/ani10061047
A Systematic Review Comparing Experimental Design of Animal and Human Methotrexate Efficacy Studies for Rheumatoid Arthritis: Lessons for the Translational Value of Animal StudiesCited by: 8
Author(s): Cathalijn Leenaars, Frans Stafleu, David De Jong, Maikel van Berlo, Tijmen Geurts, Tineke Coenen-de Roo, Jan–Bas Prins, Rosalie W.M. Kempkes, Janneke Elzinga, André Bleich, Rob de Vries, F.L.B. Meijboom, Merel Ritskes‐Hoitinga
Software Mentions: 8
Published: over 4 years ago
10.1186/s13059-021-02260-y
LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regionsCited by: 31
Author(s): Maša Roller, Ericca L. Stamper, Diego Villar, Osagie Izuogu, Fergal J. Martin, Aisling M. Redmond, Raghavendra Ramachanderan, Louise Harewood, Duncan T. Odom, Paul Flicek
Software Mentions: 8
Published: almost 4 years ago
10.3390/ani10050889
Combination of Bacillus licheniformis and Salinomycin: Effect on the Growth Performance and GIT Microbial Populations of Broiler ChickensCited by: 15
Author(s): Jacek Trela, Bartosz Kierończyk, Veerle Hautekiet, Damian Józefiak
Software Mentions: 8
Published: over 4 years ago
10.1186/s40168-021-01078-x
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminantsCited by: 85
Author(s): Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiu-Tian Yan, Limei Lin, Qian Jiang, Lei Zhang, Chang Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B. Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
Software Mentions: 8
Published: over 3 years ago
10.3389/fphar.2021.608778
Unraveling Gene Fusions for Drug Repositioning in High-Risk NeuroblastomaCited by: 0
Author(s): Zhichao Liu, Xi Chen, Ruth Roberts, Ruili Huang, Mike Mikailov, Weida Tong
Software Mentions: 8
Published: over 3 years ago
10.1002/dad2.12066
Semantic loss marks early Alzheimer's disease‐related neurodegeneration in older adults without dementiaCited by: 20
Author(s): Jet M.J. Vonk, Vincent Bouteloup, Jean‐François Mangin, Bruno Dubois, Frederic Blanc, Audrey Gabelle, Mathieu Ceccaldi, Cédric Annweiler, Pierre Krolak‐Salmon, Cathérine Belin, Thérèse Rivasseau‐Jonveaux, Adrien Julian, François Sellal, Éloi Magnin, Marie Chupin, Marie‐Odile Habert, Geneviève Chêne, Carole Dufouil
Software Mentions: 8
Published: almost 5 years ago
10.3389/fcell.2021.686664
Systematic Characterization of Novel Immune Gene Signatures Predicts Prognostic Factors in Hepatocellular CarcinomaCited by: 4
Author(s): Dafeng Xu, Yu Wang, Junzhen Wu, Yuliang Zhang, Zhehao Liu, Yonghai Chen, Jinfang Zheng
Software Mentions: 8
Published: about 3 years ago
10.3389/fcell.2021.665869
Enhancing Fatty Acid Catabolism of Macrophages Within Aberrant Breast Cancer Tumor Microenvironment Can Re-establish Antitumor FunctionCited by: 4
Author(s): Yucui Gu, Xingjian Niu, Lei Yin, Yiran Wang, Yue Yang, Xudong Yang, Qingyuan Zhang, Hongfei Ji
Software Mentions: 8
Published: over 3 years ago
10.18632/aging.202515
Cell differentiation trajectory predicts patient potential immunotherapy response and prognosis in gastric cancerCited by: 18
Author(s): Renshen Xiang, Yuping Rong, Yuhang Ge, Wei Song, Jun Ren, Tao Fu
Software Mentions: 8
Published: almost 4 years ago
10.18632/aging.202670
A novel panel based on immune infiltration and tumor mutational burden for prognostic prediction in hepatocellular carcinomaCited by: 5
Author(s): Chengzhi Xie, Hewei Wu, Tao Pan, Xingrong Zheng, Xiaoàn Yang, Genglin Zhang, Yunwen Lian, Jiaxin Lin, Liang Peng
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-021-92658-2
Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLPCited by: 10
Author(s): Abhijeet Singh, Bettina Müller, Anna Schnürer
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-021-92913-6
Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in miceCited by: 14
Author(s): Chunyan Yao, Zhiyuan Wang, Huiyong Jiang, Yan Ren, Qin Huang, Yin Wang, Hui Xie, Ying Zou, Ying Yu, Longxian Lv
Software Mentions: 8
Published: over 3 years ago
10.1128/Spectrum.00536-21
Mild and Severe SARS-CoV-2 Infection Induces Respiratory and Intestinal Microbiome Changes in the K18-hACE2 Transgenic Mouse ModelCited by: 16
Author(s): Brittany Seibert, C. Joaquín Cáceres, Stivalis Cárdenas-García, Silvia Carnaccini, Ginger Geiger, Daniela S. Rajão, Elizabeth A. Ottesen, Daniel R. Pérez
Software Mentions: 8
Published: about 3 years ago
10.7717/peerj.12070
Prognostic impact of a lymphocyte activation-associated gene signature in GBM based on transcriptome analysisCited by: 1
Author(s): Yujia Lan, Erjie Zhao, Xinxin Zhang, Xiaojing Zhu, Linyun Wan, Aditya Suru, Yanyan Ping, Yihan Wang
Software Mentions: 8
Published: over 3 years ago
10.1186/s12915-017-0379-1
Time-resolved dual transcriptomics reveal early induced Nicotiana benthamiana root genes and conserved infection-promoting Phytophthora palmivora effectorsCited by: 55
Author(s): Édouard Evangelisti, Anna Gogleva, Thomas Hainaux, Mehdi Doumane, Frej Tulin, Clément Quan, T. S. Yunusov, Kévin Floch, Sebastián Schornack
Software Mentions: 8
Published: over 7 years ago
10.3389/fcvm.2020.586871
Predicting Diagnostic Gene Biomarkers Associated With Immune Infiltration in Patients With Acute Myocardial InfarctionCited by: 64
Author(s): Enfa Zhao, Hang Xie, Yushun Zhang
Software Mentions: 8
Published: about 4 years ago
10.1186/s13059-020-01998-1
Wheat chromatin architecture is organized in genome territories and transcription factoriesCited by: 89
Author(s): Lorenzo Concia, Alaguraj Veluchamy, Juan S. Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Séverine Domenichini, Natalia Y. Rodriguez Granados, Soon-Kap Kim, Thomas Blein, Susan Duncan, Clement Pichot, Deborah Manza‐Mianza, Caroline Juéry, Etienne Paux, Graham Moore, Heribert Hirt, Catherine Bergounioux, Martín Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane, Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse, Moussa Benhamed
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0100570
LADES: A Software for Constructing and Analyzing Longitudinal Designs in Biomedical ResearchCited by: 0
Author(s): Alan Vázquez-Alcocer, Daniel Ladislao Garzón-Cortes, Rosa Sánchez‐Casas
Software Mentions: 8
Published: over 10 years ago
10.1038/s41598-021-94853-7
Unique chemical parameters and microbial activity lead to increased archaeological preservation at the Roman frontier site of Vindolanda, UKCited by: 3
Author(s): Caroline Orr, Rhys Williams, Hrafnhildur Halldórsdóttir, Andrew Birley, Elizabeth M. Greene, Andrew Nelson, T. Komang Ralebitso-Senior, Gillian Taylor
Software Mentions: 8
Published: over 3 years ago
10.1186/s13059-019-1641-3
dStruct: identifying differentially reactive regions from RNA structurome profiling dataCited by: 20
Author(s): Krishna Choudhary, Yi-Chun Lai, Elizabeth Tran, Sharon Aviran
Software Mentions: 8
Published: almost 6 years ago
10.1186/s13059-018-1567-1
Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disordersCited by: 119
Author(s): Heath O’Brien, Eilís Hannon, Matthew Hill, Carolina Toste, Matthew J. Robertson, Joanne Morgan, Gemma M. McLaughlin, Cathryn M. Lewis, Leonard C Schalkwyk, Lynsey S. Hall, Antonio F. Pardiñas, Michael John Owen, Michael O’Donovan, Jonathan Mill, Nicholas John Bray
Software Mentions: 8
Published: about 6 years ago
10.3390/plants10081594
RNAi Suppression of LEAFY Gives Stable Floral Sterility, and Reduced Growth Rate and Leaf Size, in Field-Grown PoplarsCited by: 5
Author(s): Amy L. Klocko, Amanda Goddard, Jeremy R. Jacobson, Anna Magnuson, S. H. Strauss
Software Mentions: 8
Published: over 3 years ago
10.1186/s13059-018-1435-z
RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellumCited by: 152
Author(s): Chunhui Ma, Mengqi Chang, Hongyi Lv, Zhiwei Zhang, Weilong Zhang, Xue He, Gaolang Wu, Shuaiyang Zhao, Yao Zhang, Di Wang, Xufei Teng, Chunying Liu, Qing Li, Arne Klungland, Yamei Niu, Shuhui Song, Wei‐Min Tong
Software Mentions: 8
Published: over 6 years ago
10.1038/s41598-021-94732-1
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytesCited by: 22
Author(s): Tanya Grancharova, Kaytlyn A. Gerbin, Alexander Rosenberg, Charles M. Roco, Joy Arakaki, Colette M DeLizo, Stephanie Q. Dinh, Rory Donovan-Maiye, Matthew Hirano, Angelique M. Nelson, Joyce Tang, Julie A. Theriot, Calysta Yan, Vilas Menon, Sean P. Palecek, Georg Seelig, Ruwanthi N. Gunawardane
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pbio.3001007
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inferenceCited by: 180
Author(s): Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas
Software Mentions: 8
Published: almost 4 years ago
10.1371/journal.pone.0247476
Small area estimation and childhood obesity surveillance using electronic health recordsCited by: 5
Author(s): Ying‐Qi Zhao, Derek Norton, Larry Hanrahan
Software Mentions: 8
Published: almost 4 years ago
10.1186/s12936-018-2627-4
Diagnostic performance of salivary urea nitrogen dipstick to detect and monitor acute kidney disease in patients with malariaCited by: 11
Author(s): Viviane Calice‐Silva, Euclides Nenga Manuel Sacomboio, Jochen G. Raimann, Rhys Evans, Cruz S. Sebastião, Adelino Tchilanda Tchivango, Peter Kotanko, Nathan W. Levin, Roberto Pecoits‐Filho
Software Mentions: 8
Published: almost 6 years ago
10.1186/s12859-016-1235-y
BTR: training asynchronous Boolean models using single-cell expression dataCited by: 62
Author(s): Chee Lim, Huange Wang, Steven Woodhouse, Nir Piterman, Lorenz Wernisch, Jasmin Fisher, Berthold Göttgens
Software Mentions: 8
Published: about 8 years ago
10.1186/s12859-021-04124-5
Popularity and performance of bioinformatics software: the case of gene set analysisCited by: 21
Author(s): Chengshu Xie, Shaurya Jauhari, Antonio M. Mora
Software Mentions: 8
Published: over 3 years ago
10.1007/s00248-019-01414-7
Tropical Rainforest Restoration Plantations Are Slow to Restore the Soil Biological and Organic Carbon Characteristics of Old Growth RainforestCited by: 7
Author(s): Mark Bonner, Diane E. Allen, Richard Brackin, Timothy Smith, Tom Lewis, Luke P. Shoo, Susanne Schmidt
Software Mentions: 8
Published: over 5 years ago
10.1002/rse2.171
Large‐scale assessment of intra‐ and inter‐annual breeding success using a remote camera networkCited by: 4
Author(s): Casey Youngflesh, Fiona M. Jones, Heather J. Lynch, Joan Arthur, Zuzana Ročkaiová, Holly R. Torsey, Tom Hart
Software Mentions: 8
Published: about 4 years ago
10.1186/s13073-020-00799-2
Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activitiesCited by: 20
Author(s): Juha Mehtonen, Susanna Teppo, Mari Lahnalampi, Aleksi Kokko, Riina Kaukonen, Laura Oksa, Maria Bouvy-Liivrand, Alena Malyukova, Artturi Mäkinen, Saara Laukkanen, Petri Mäkinen, Samuli Rounioja, Pekka Ruusuvuori, Olle Sangfelt, Riikka Lund, Tapio Lönnberg, Olli Lohi, Merja Heinäniemi
Software Mentions: 8
Published: about 4 years ago
10.3389/fmicb.2019.02492
Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?Cited by: 17
Author(s): Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy M. Vogel, Catherine Larose
Software Mentions: 8
Published: about 5 years ago
10.1097/MD.0000000000027374
Identification and validation of a hypoxia-related prognostic signature in clear cell renal cell carcinoma patientsCited by: 7
Author(s): Zhengtian Li, Gang Du, Rong Zhao, Weibo Yang, Chan Li, Jun Huang, Zhenpei Wen, Hening Li, Bo Zhang
Software Mentions: 8
Published: about 3 years ago
10.3389/fpls.2021.675760
Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolataCited by: 4
Author(s): Pezhman Safdari, Layla Höckerstedt, Mikael Brosché, Jarkko Salojärvi, Anna‐Liisa Laine
Software Mentions: 8
Published: over 3 years ago
10.1007/s12031-020-01787-2
Studying Autism Using Untargeted Metabolomics in Newborn Screening SamplesCited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: almost 4 years ago
10.3390/cancers12113089
CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the PancreasCited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: about 4 years ago
10.1098/rsta.2019.0366
Dynamics of organic matter and bacterial activity in the Fram Strait during summer and autumnCited by: 7
Author(s): Anabel von Jackowski, Julia Große, Eva‐Maria Nöthig, Anja Engel
Software Mentions: 8
Published: about 4 years ago
10.3390/cancers13061212
Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple MyelomaCited by: 3
Author(s): Ashwini Kumar, Sadiksha Adhikari, Matti Kankainen, Caroline A. Heckman
Software Mentions: 8
Published: over 3 years ago
10.3390/cancers12010045
N-Terminal Truncated Myb with New Transcriptional Activity Produced Through Use of an Alternative MYB Promoter in Salivary Gland Adenoid Cystic CarcinomaCited by: 11
Author(s): Candace A. Frerich, Hailey N. Sedam, Huining Kang, Yoshitsugu Mitani, Adel K. El‐Naggar, Scott A. Ness
Software Mentions: 8
Published: almost 5 years ago
10.3389/fimmu.2020.00611
Human Regulatory T Cells From Umbilical Cord Blood Display Increased Repertoire Diversity and Lineage Stability Relative to Adult Peripheral BloodCited by: 19
Author(s): Keshav Motwani, Leeana D. Peters, Willem H Vliegen, Ahmed G Elsayed, Howard R. Seay, Maria-Cecilia Lopez, Henry V. Baker, Amanda L. Posgai, Todd M. Brusko, Daniel J. Perry, Rhonda Bacher, Joseph Larkin, Michael J. Haller
Software Mentions: 8
Published: over 4 years ago
10.1186/s12864-020-6703-0
Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical predictionCited by: 26
Author(s): Xubo Qian, Yong‐Xin Liu, Xiaohong Ye, Wen Jie Zheng, Shaoxia Lv, Miaojun Mo, Jinjing Lin, Wen-Qin Wang, Weihan Wang, Xianning Zhang, Meiping Lu
Software Mentions: 8
Published: over 4 years ago
10.12688/f1000research.18002.1
Epidemic curves made easy using the R package incidenceCited by: 38
Author(s): Zhian N. Kamvar, Jun Cai, Juliet R. C. Pulliam, Jakob Schumacher, Thibaut Jombart
Software Mentions: 8
Published: almost 6 years ago
10.3390/genes10110937
NF-YA Overexpression in Lung Cancer: LUSCCited by: 28
Author(s): Eugenia Bezzecchi, Mirko Ronzio, Diletta Dolfini, Roberto Mantovani
Software Mentions: 8
Published: about 5 years ago
10.7717/peerj.8667
Element concentrations in pelagic<i>Sargassum</i>along the Mexican Caribbean coast in 2018-2019Cited by: 78
Author(s): Rosa E. Rodríguez-Martínez, Priyadarsi D. Roy, Nuria Torrescano-Valle, Nancy Cabañillas-Terán, Silvia Carrillo‐Domínguez, Ligia Collado‐Vides, Marta García-Sánchez, Brigitta I. van Tussenbroek
Software Mentions: 8
Published: almost 5 years ago
10.3390/diagnostics11061079
Identification of Diagnostic Biomarkers and Their Correlation with Immune Infiltration in Age-Related Macular DegenerationCited by: 3
Author(s): Yuyang Zeng, Xiujuan Yin, Changzheng Chen, Yiqiao Xing
Software Mentions: 8
Published: over 3 years ago
10.1016/j.xcrm.2020.100073
Safety and COVID-19 Symptoms in Individuals Recently Vaccinated with BCG: a Retrospective Cohort StudyCited by: 72
Author(s): Simone J.C.F.M. Moorlag, Rosanne C. van Deuren, Cornelis H. van Werkhoven, Martin Jaeger, Priya A. Debisarun, Esther Taks, Vera P. Mourits, Valerie A C M Koeken, L. Charlotte J. de Bree, Thijs ten Doesschate, Maartje C. P. Cleophas, Sanne P. Smeekens, Marije Oosting, Frank L. van de Veerdonk, Leo A. B. Joosten, Jaap ten Oever, J.W.M. van der Meer, Nigel Curtis, Péter Aaby, Christine Stabell-Benn, Evangelos J. Giamarellos‐Bourboulis, Marc J. M. Bonten, Reinout van Crevel, Mihai G. Netea
Software Mentions: 8
Published: over 4 years ago
10.3390/metabo10120494
Metabolic Drug Response Phenotyping in Colorectal Cancer Organoids by LC-QTOF-MSCited by: 17
Author(s): Sylvia K. Neef, Nicole Janssen, Stefan Winter, Svenja K. Wallisch, Ute Hofmann, Marc H. Dahlke, Matthias Schwab, Thomas E. Mürdter, Mathias Haag
Software Mentions: 8
Published: almost 4 years ago
10.1186/s12864-021-07918-2
CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysisCited by: 10
Author(s): Carlos Alberto Oliveira de Biagi, Ricardo Perecin Nociti, Danielle Barbosa Brotto, Breno Osvaldo Funicheli, Patrícia de Cássia Ruy, João Paulo Bianchi Ximenez, David Livingstone Alves Figueiredo, Wilson A. Silva
Software Mentions: 8
Published: over 3 years ago
10.7554/eLife.65508
Seroconversion stages COVID19 into distinct pathophysiological statesCited by: 36
Author(s): Matthew D. Galbraith, Kohl T Kinning, Kelly D. Sullivan, Ryan M. Baxter, Paula Araya, Kimberly R. Jordan, Seth Russell, Keith P Smith, Ross E Granrath, Jessica Shaw, Monika Dzieciątkowska, Tusharkanti Ghosh, Andrew A. Monte, Angelo D’Alessandro, Kirk C. Hansen, Tellen D Benett, Elena W.Y. Hsieh, Joaquín M. Espinosa
Software Mentions: 8
Published: over 3 years ago
10.1093/ije/dyz208
Association between ambient and household air pollution with carotid intima-media thickness in peri-urban South India: CHAI-ProjectCited by: 16
Author(s): Otávio T. Ranzani, Carles Milà, Margaux Sanchez, Santhi Bhogadi, Bharati Kulkarni, Kalpana Balakrishnan, Sankar Sambandam, Jordi Sunyer, Julian Marshall, Sanjay Kinra, Cathryn Tonne
Software Mentions: 8
Published: about 5 years ago
10.1186/s12863-020-00936-1
Separating two tightly linked species-defining phenotypes in Bactrocera with hybrid recombinant analysisCited by: 7
Author(s): Heng Lin Yeap, Siu Fai Lee, Freya Robinson, Roslyn Mourant, J. A. Sved, Michael Frommer, Alexie Papanicolaou, Owain Edwards, John G. Oakeshott
Software Mentions: 8
Published: almost 4 years ago
10.7717/peerj.10682
Identification of the hub genes in gastric cancer through weighted gene co-expression network analysisCited by: 7
Author(s): Chunyang Li, Haopeng Yu, Yajing Sun, Xiaoxi Zeng, Wei Zhang
Software Mentions: 8
Published: over 3 years ago
10.1128/mBio.00925-19
A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera <i>Aspergillus</i> and <i>Penicillium</i>Cited by: 95
Author(s): Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas
Software Mentions: 8
Published: over 5 years ago
10.1186/s12889-021-10979-3
Associations of meeting 24-h movement guidelines with stress and self-rated health among adults: is meeting more guidelines associated with greater benefits?Cited by: 16
Author(s): Kaja Kastelic, Željko Pedišić, Dean Lipovac, Nika Kastelic, Sitong Chen, Nejc Šarabon
Software Mentions: 8
Published: over 3 years ago
10.3389/fmolb.2021.657087
N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer PrognosisCited by: 16
Author(s): Zhenyu Zhao, Qidong Cai, Peng-Fei Zhang, Boxue He, Ping Xiong, Guangxu Tu, Weilin Peng, Li Wang, Fenglei Yu, Xiang Wang
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pone.0246052
Transcriptomic profiling of susceptible and resistant flax seedlings after Fusarium oxysporum lini infectionCited by: 10
Author(s): Aleksandra Boba, Kamil Kostyń, Bartosz Kozak, Iwan Zalewski, Jan Szopa, Anna Kulma
Software Mentions: 8
Published: almost 4 years ago
10.3389/fmolb.2019.00005
Alternative Splicing of MXD3 and Its Regulation of MXD3 Levels in GlioblastomaCited by: 10
Author(s): Tin Ngo, Abraham Corrales, Traci Bourne, Samir Elmojahid, Kit S. Lam, Elizabeth Díaz
Software Mentions: 8
Published: almost 6 years ago
10.3390/biom11050695
Variations in Gut Microbiome are Associated with Prognosis of Hypertriglyceridemia-Associated Acute PancreatitisCited by: 10
Author(s): Xiaomin Hu, Liang Gong, Ronggang Zhou, Ziying Han, Ji Li, Yan Zhang, Shuyang Zhang, Dong Wu
Software Mentions: 8
Published: over 3 years ago
10.1093/cercor/bhaa348
The Functional Foundations of Episodic Memory Remain Stable Throughout the LifespanCited by: 3
Author(s): Didac Vidal‐Piñeiro, Markus Handal Sneve, Inge K. Amlien, Håkon Grydeland, Athanasia M. Mowinckel, James M Roe, Øystein Sørensen, Lars Nyberg, Kristine B. Walhovd, Anders M. Fjell
Software Mentions: 8
Published: almost 4 years ago
10.1097/MD.0000000000026194
Integrated analysis of ceRNA network in hepatocellular carcinoma using bioinformatics analysisCited by: 5
Author(s): Yu Luo, Hongjuan Li, Hongli Huang, Ling Xue, Haiwen Li, Li Liu, Haiyan Fu
Software Mentions: 8
Published: over 3 years ago
10.3390/tropicalmed6010028
Knowledge and Perception of Rabies among School Children in Rabies Endemic Areas of South BhutanCited by: 4
Author(s): Lungten Lungten, Sangay Rinchen, Tenzin Tenzin, Waraphon Phimpraphai, Michel De Garine‐Wichatitsky
Software Mentions: 8
Published: over 3 years ago
10.7717/peerj.8807
Evaluation of δ15N analysis to trace the origin of Diaphorina citri (Hemiptera: Liviidae) to citrus orchard fertilization managementCited by: 1
Author(s): Francesc Gómez-Marco, Andrew Yoshimoto, W. Evan Braswell, Richard Stouthamer
Software Mentions: 8
Published: over 4 years ago
10.3390/metabo11070463
Sex-Specific Relationship between the Cardiorespiratory Fitness and Plasma Metabolite Patterns in Healthy Humans—Results of the KarMeN StudyCited by: 5
Author(s): Sina Kistner, Maik Döring, Ralf Krüger, M Rist, Christoph H. Weinert, Diana Bunzel, Benedikt Merz, Katrin Radloff, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 8
Published: over 3 years ago
10.1097/MD.0000000000025542
Establishment of a clinical diagnostic model for gouty arthritis based on the serum biochemical profileCited by: 0
Author(s): Shang Lyu, Ruowen Ding, Shilin Yang, Wanyuan Chen, Yi Rao, Hui Ouyang, Peng Liu, Yulin Feng
Software Mentions: 8
Published: over 3 years ago
10.1515/tnsci-2021-0004
Calumenin contributes to epithelial-mesenchymal transition and predicts poor survival in gliomaCited by: 8
Author(s): Ying Yang, Jin Wang, Shi‐Hai Xu, Fei Shi, Aijun Shan
Software Mentions: 8
Published: almost 4 years ago
10.3390/genes11010066
Genome Resolved Biogeography of MamiellalesCited by: 19
Author(s): Jade Leconte, L. Felipe Benites, Thomas Vannier, Patrick Wincker, Gwenaël Piganeau, Olivier Jaillon
Software Mentions: 8
Published: almost 5 years ago
10.1186/s12889-018-5235-x
The fundamental association between mental health and life satisfaction: results from successive waves of a Canadian national surveyCited by: 121
Author(s): Patrick Lombardo, Wayne Jones, Liangliang Wang, Xin Shen, Elliot M. Goldner
Software Mentions: 8
Published: over 6 years ago
10.3390/toxins11100612
Lipophilic Toxins in Galicia (NW Spain) between 2014 and 2017: Incidence on the Main Molluscan Species and Analysis of the Monitoring EfficiencyCited by: 21
Author(s): Juan Blanco, Fabiola Arévalo, Jorge Correa, Á. Moroño
Software Mentions: 8
Published: about 5 years ago
10.1371/journal.pone.0183264
The transcriptional profiling of human in vivo-generated plasma cells identifies selective imbalances in monoclonal gammopathiesCited by: 12
Author(s): Luis M. Valor, Beatriz Rodrı́guez-Bayona, Ana Ramos-Amaya, José A. Brieva, Antonio Campos‐Caro
Software Mentions: 8
Published: over 7 years ago
10.1371/journal.pone.0224879
Long non-coding RNAs and latent HIV – A search for novel targets for latency reversalCited by: 17
Author(s): Wim Trypsteen, Cory H. White, Amey Mukim, Celsa A. Spina, Ward De Spiegelaere, Steve Lefever, Vicente Planelles, Alberto Bosque, Christopher H. Woelk, Linos Vandekerckhove, Nadejda Beliakova-Bethell
Software Mentions: 8
Published: about 5 years ago
10.1371/journal.pone.0187758
Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forestCited by: 20
Author(s): Fatima Zahra Maghnia, Younes Abbas, Frédéric Mahe, Benaissa Kerdouh, Estelle Tournier, Mohamed Ouadji, Pierre Tisseyre, Yves Prin, Naïma El Ghachtouli, Salah Eddine Bakkali Yakhlef, Robin Duponnois, Hervé Sanguin
Software Mentions: 8
Published: about 7 years ago
10.3389/fonc.2021.654388
MYD88 Is a Potential Prognostic Gene and Immune Signature of Tumor Microenvironment for GliomasCited by: 13
Author(s): Qinglong Guo, Xing Xiao, Jinsen Zhang
Software Mentions: 8
Published: over 3 years ago
10.7717/peerj.8303
TRANSPARENT TESTA GLABRA 1 participates in flowering time regulation in<i>Arabidopsis thaliana</i>Cited by: 5
Author(s): Barbara A M Paffendorf, Rawan Qassrawi, Andrea M Meys, Laura Trimborn, Andrea Schrader
Software Mentions: 8
Published: almost 5 years ago
10.3389/fimmu.2021.670040
ARID1A, ARID1B, and ARID2 Mutations Serve as Potential Biomarkers for Immune Checkpoint Blockade in Patients With Non-Small Cell Lung CancerCited by: 24
Author(s): Guangsheng Zhu, Ruifeng Shi, Yongwen Li, Zihe Zhang, Songlin Xu, Chen Chen, Peijun Cao, Hongbing Zhang, Minghui Liu, Zhengxia Pan, Hongyu Liu, Jun Chen
Software Mentions: 8
Published: over 3 years ago
10.7717/peerj.10696
Rapid relative increase of crustose coralline algae following herbivore exclusion in a reef of El SalvadorCited by: 1
Author(s): Xochitl E. Elías Ilosvay, Johanna Segovia, Sebastian C. A. Ferse, Walter Ernesto Elias, Christian Wild
Software Mentions: 8
Published: almost 4 years ago
10.3389/fimmu.2021.617592
Phenotypic and Epigenetic Adaptations of Cord Blood CD4+ T Cells to Maternal ObesityCited by: 11
Author(s): Suhas Sureshchandra, Norma Mendoza, Allen Jankeel, Randall M. Wilson, Nicole Marshall, Ilhem Messaoudi
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pone.0122599
Ex Situ Conservation Priorities for the Wild Relatives of Potato (Solanum L. Section Petota)Cited by: 73
Author(s): Nora P. Castañeda‐Álvarez, Stef de Haan, Henry Juárez, Colin K. Khoury, Harold A. Achicanoy, Chrystian C. Sosa, Vivian Bernau, Alberto Salas, Bettina Heider, Reinhard Simon, Nigel Maxted, David M. Spooner
Software Mentions: 8
Published: over 9 years ago
10.3389/fpls.2018.00387
Functional and Taxonomic Differentiation of Macrophyte Assemblages Across the Yangtze River Floodplain Under Human ImpactsCited by: 22
Author(s): Min Zhang, Jorge García Molinos, Xiaolin Zhang, Jun Xu
Software Mentions: 8
Published: over 6 years ago
10.3390/md18060313
A Metabolomics Exploration of the Sexual Phase in the Marine Diatom Pseudo-nitzschia multistriataCited by: 15
Author(s): Federica Fiorini, Camilla Borgonuovo, Maria Immacolata Ferrante, Mark Brönstrup
Software Mentions: 8
Published: over 4 years ago
10.3389/fnhum.2019.00181
Ability-Based Emotional Intelligence Is Associated With Greater Cardiac Vagal Control and ReactivityCited by: 3
Author(s): John R. Vanuk, Anna Alkozei, Adam C. Raikes, John J. B. Allen, William D.S. Killgore
Software Mentions: 8
Published: over 5 years ago
10.1038/s41598-020-75161-y
Strap muscle invasion in differentiated thyroid cancer does not impact disease-specific survival: a population-based studyCited by: 4
Author(s): Ja Kyung Yoon, Jandee Lee, Min Jung Kim, Jung Hyun Yoon, Vivian Youngjean Park, Kyunghwa Han, Jin Young Kwak
Software Mentions: 8
Published: about 4 years ago
10.1038/s41598-018-23630-w
The Anti-Cancer Multikinase Inhibitor Sorafenib Impairs Cardiac Contractility by Reducing Phospholamban Phosphorylation and Sarcoplasmic Calcium TransientsCited by: 21
Author(s): Christopher Schneider, Markus Wallner, Ewald Kolesnik, Viktoria Herbst, Heinrich Mächler, Martin Pichler, Dirk von Lewinski, Simon Sedej, Peter P. Rainer
Software Mentions: 8
Published: over 6 years ago
10.7150/ijms.51064
Tumor Mutation Burden, Immune Cell Infiltration, and Construction of Immune-Related Genes Prognostic Model in Head and Neck CancerCited by: 32
Author(s): Aimin Jiang, Mengdi Ren, Na Liu, Huan Gao, Jingjing Wang, Xiaoqiang Zheng, Xiao Fu, Xuan Liu, Zhiping Ruan, Tao Tian, Yu Yao
Software Mentions: 8
Published: almost 4 years ago
10.5696/2156-9614-10.27.200912
Levels of PM10 and PM2.5 and Respiratory Health Impacts on School-Going Children in KenyaCited by: 8
Author(s): Faridah Hussein Were, Godfrey A. Wafula, Cromwel B Lukorito, Timothy Kamanu
Software Mentions: 8
Published: about 4 years ago
10.3390/genes12030444
Genome Analysis of Endotrypanum and Porcisia spp., Closest Phylogenetic Relatives of Leishmania, Highlights the Role of Amastins in Shaping PathogenicityCited by: 9
Author(s): Amanda T S Albanaz, Evgeny S. Gerasimov, Jeffrey Jon Shaw, Jovana Sádlová, Julius Lukeš, Petr Volf, Frederik Opperdoes, Alexei Y. Kostygov, Anzhelika Butenko, Vyacheslav Yurchenko
Software Mentions: 8
Published: over 3 years ago
10.7150/ijms.47073
A Novel Nomogram Predicting Distant Metastasis in T1 and T2 Gallbladder Cancer: A SEER-based StudyCited by: 10
Author(s): Yulong Cai, Yixin Lin, Lingjun Jiang, Hui Ye, Fuyu Li, Nan‐Sheng Cheng
Software Mentions: 8
Published: almost 5 years ago
10.1038/s41598-021-99046-w
Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screeningCited by: 7
Author(s): Kertu Liis Krigul, Oliver Aasmets, Kreete Lüll, Tõnis Org, Elin Org
Software Mentions: 8
Published: about 3 years ago
10.1186/s12957-021-02328-w
Identification of novel antioxidant gene signature to predict the prognosis of patients with gastric cancerCited by: 10
Author(s): Jianhua Wu, Xuan Wang, Nan Wang, Li Ma, Xin Xie, Hao Zhang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 8
Published: over 3 years ago
10.3390/cells8080920
The Snapdragon LATE ELONGATED HYPOCOTYL Plays A Dual Role in Activating Floral Growth and Scent EmissionCited by: 9
Author(s): Marta I. Terry, Fernando Pérez-Sánz, Pedro J. Navarro, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 8
Published: over 5 years ago
10.1093/femsec/fiaa244
Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiomeCited by: 0
Author(s): Lydia-Ann J. Ghuneim, Marco A. Distaso, Tatyana Chernikova, Rafael Bargiela, Evgenii A. Lunev, Aleksei A. Korzhenkov, Stepan V. Toshchakov, David Rojo, Coral Barbas, Manuel Ferrer, Olga V. Golyshina, Peter N. Golyshin, Davey L. Jones
Software Mentions: 8
Published: almost 4 years ago
10.1371/journal.pone.0234537
Prairie plants harbor distinct and beneficial root-endophytic bacterial communitiesCited by: 0
Author(s): Boahemaa Adu-Oppong, Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas
Software Mentions: 8
Published: over 4 years ago
10.12688/wellcomeopenres.15210.2
"If you catch my drift...": ability to infer implied meaning is distinct from vocabulary and grammar skillsCited by: 10
Author(s): Alexander C. Wilson, Dorothy V. M. Bishop
Software Mentions: 8
Published: over 5 years ago
10.1038/s41598-019-55325-1
Development of an in silico prediction system of human renal excretion and clearance from chemical structure information incorporating fraction unbound in plasma as a descriptorCited by: 25
Author(s): Reiko Watanabe, Rikiya Ohashi, Tsuyoshi Esaki, Hitoshi Kawashima, Yayoi Natsume-Kitatani, Chioko Nagao, Kenji Mizuguchi
Software Mentions: 8
Published: almost 5 years ago
10.3390/biom10081179
Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal LambsCited by: 2
Author(s): Narciso M. Quijada, Raúl Bodas, José M. Lorenzo, Stephan Schmitz‐Esser, David Rodrı́guez-Làzaro, Marta Hernández
Software Mentions: 8
Published: over 4 years ago
10.1111/2041-210X.13422
nosoi: A stochastic agent‐based transmission chain simulation framework in <scp>r</scp>Cited by: 19
Author(s): Sébastian Lequime, Paul Bastide, Simon Dellicour, Philippe Lemey, Guy Baele
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0106499
Mean Annual Precipitation Explains Spatiotemporal Patterns of Cenozoic Mammal Beta Diversity and Latitudinal Diversity Gradients in North AmericaCited by: 26
Author(s): Danielle Fraser, Christopher Hassall, Root Gorelick, Natalia Rybczynski
Software Mentions: 8
Published: about 10 years ago
10.1186/s13073-019-0615-0
Single-cell analysis reveals congruence between kidney organoids and human fetal kidneyCited by: 144
Author(s): Alexander N. Combes, Luke Zappia, Pei X. Er, Alicia Oshlack, Melissa H. Little
Software Mentions: 8
Published: almost 6 years ago
10.1038/s41598-020-76868-8
Tree canopy arthropods have idiosyncratic responses to plant ecophysiological traits in a warm temperate forest complexCited by: 7
Author(s): Rudi C. Swart, Michael J. Samways, Francois Roets
Software Mentions: 8
Published: about 4 years ago