Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0249691

https://doi.org/10.1371/journal.pone.0249691

Profiling DNA break sites and transcriptional changes in response to contextual fear learning

Cited by: 25
Author(s): Ryan Stott, Oleg Kritsky, Li‐Huei Tsai
Published: over 3 years ago

Software Mentions 8

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DOSE
Disease Ontology Semantic and Enrichment analysis
Papers that mentioned: 138
bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779