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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12915-017-0379-1

https://doi.org/10.1186/s12915-017-0379-1

Time-resolved dual transcriptomics reveal early induced Nicotiana benthamiana root genes and conserved infection-promoting Phytophthora palmivora effectors

Cited by: 55
Author(s): Édouard Evangelisti, Anna Gogleva, Thomas Hainaux, Mehdi Doumane, Frej Tulin, Clément Quan, T. S. Yunusov, Kévin Floch, Sebastián Schornack
Published: about 8 years ago

Software Mentions 8

bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
Very Likely Science (75)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: Mfuzz
Soft clustering of time series gene expression data
Papers that mentioned: 160
Very Likely Science (100)
bioconductor: qvalue
Q-value estimation for false discovery rate control
Papers that mentioned: 248
Very Likely Science (100)
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
pypi: hmmer
HMMER binaries.
Papers that mentioned: 196
Very Likely Science (90)