Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0224879

https://doi.org/10.1371/journal.pone.0224879

Long non-coding RNAs and latent HIV – A search for novel targets for latency reversal

Cited by: 17
Author(s): Wim Trypsteen, Cory H. White, Amey Mukim, Celsa A. Spina, Ward De Spiegelaere, Steve Lefever, Vicente Planelles, Alberto Bosque, Christopher H. Woelk, Linos Vandekerckhove, Nadejda Beliakova-Bethell
Published: about 5 years ago

Software Mentions 8

bioconductor: GenomicFeatures

Conveniently import and query gene models
Papers that mentioned: 141

bioconductor: RNASeqPower

Sample size for RNAseq studies
Papers that mentioned: 22

bioconductor: RUVSeq

Remove Unwanted Variation from RNA-Seq Data
Papers that mentioned: 91

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: nlme

Linear and Nonlinear Mixed Effects Models
Papers that mentioned: 3,265

cran: VennDiagram

Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626

pypi: HTSeq

A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071