10.3390/microorganisms8071004

Relationship between the Oral and Vaginal Microbiota of South African Adolescents with High Prevalence of Bacterial Vaginosis
Cited by: 11
Author(s): Christina Balle, Rachel Esra, Enock Havyarimana, Shameem Z. Jaumdally, Katie Lennard, Iyaloo N. Konstantinus, Shaun Barnabas, Anna‐Ursula Happel, Katherine Gill, Tanya Pidwell, Jairam R. Lingappa, Hoyam Gamieldien, Linda‐Gail Bekker, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 6
Published: about 6 years ago

10.3389/fonc.2021.639085

Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-015-0664-3

Confident difference criterion: a new Bayesian differentially expressed gene selection algorithm with applications
Cited by: 5
Author(s): Fang Yu, Ming Hui Chen, Lynn Kuo, Heather Talbott, John S. Davis
Software Mentions: 6
Published: almost 11 years ago

10.3390/v12101148

Review of Hepatitis E Virus in Rats: Evident Risk of Species Orthohepevirus C to Human Zoonotic Infection and Disease
Cited by: 36
Author(s): Gábor Reuter, Ákos Boros, Péter Pankovics
Software Mentions: 6
Published: over 5 years ago

10.1002/clc.23532

Predicting <scp>90 day</scp> acute heart failure readmission and death using machine <scp>learning‐supported</scp> decision analysis
Cited by: 20
Author(s): FarnazBabaie Sarijaloo, Jaeyoung Park, Xiang Zhong, Anita Wokhlu
Software Mentions: 6
Published: over 5 years ago

10.3389/fmolb.2021.615084

Development of a Machine Learning-Based Autophagy-Related lncRNA Signature to Improve Prognosis Prediction in Osteosarcoma Patients
Cited by: 12
Author(s): Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Enhui Ren, Wenhua Yuan, Yajun Deng, Qiqi Xie
Software Mentions: 6
Published: about 5 years ago

10.3389/fimmu.2021.671201

Identification and Validation of the Signatures of Infiltrating Immune Cells in the Eutopic Endometrium Endometria of Women With Endometriosis
Cited by: 22
Author(s): Xinglong Wu, Jin-Jiao Chen, Huiling Zhou, Yu Wu, Fei Lin, Jing Shi, Hong-Zhen Wu, Hai-Qun Xiao, Wei Wang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12931-019-1144-5

Mass spectrometry imaging as a tool for evaluating the pulmonary distribution of exogenous surfactant in premature lambs
Cited by: 7
Author(s): Riccardo Zecchi, Pietro Franceschi, Laura Tigli, Francesca Ricci, Francesca Boscaro, Barbara Pioselli, Valentina Mileo, Xabier Murgia, Federico Bianco, Fabrizio Salomone, Augusto F. Schmidt, Noah H. Hillman, Matthew W. Kemp, Alan H. Jobe
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pcbi.1006581

Efficient pedigree recording for fast population genetics simulation
Cited by: 112
Author(s): Jerome Kelleher, Kevin R. Thornton, Jaime Ashander, Peter L. Ralph
Software Mentions: 6
Published: over 7 years ago

10.1038/srep26454

GBIQ: a non-arbitrary, non-biased method for quantification of fluorescent images
Cited by: 2
Author(s): Youichirou Ninomiya, Wei Zhao, Yumiko Saga
Software Mentions: 6
Published: about 10 years ago

10.1186/1471-2105-12-404

pcrEfficiency: a Web tool for PCR amplification efficiency prediction
Cited by: 58
Author(s): Izaskun Mallona, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 6
Published: over 14 years ago

10.1016/j.immuni.2021.08.011

Adenosine-to-inosine editing of endogenous Z-form RNA by the deaminase ADAR1 prevents spontaneous MAVS-dependent type I interferon responses
Cited by: 58
Author(s): Qingli Tang, Rachel E. Rigby, George R. Young, Astrid Korning Hvidt, Tanja Davis, Tiong Kit Tan, Anne Bridgeman, Alain Townsend, George Kassiotis, Jan Rehwinkel
Software Mentions: 6
Published: almost 5 years ago

10.3390/tropicalmed6030169

Hantaviruses in Agricultural and Forestry Workers: Knowledge, Attitudes and Practices in Italian Physicians
Cited by: 5
Author(s): Matteo Riccò, Pietro Ferraro, Simona Peruzzi, Federica Balzarini, Silvia Ranzieri
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.stemcr.2017.09.018

Laser Capture and Deep Sequencing Reveals the Transcriptomic Programmes Regulating the Onset of Pancreas and Liver Differentiation in Human Embryos
Cited by: 33
Author(s): Rachel Jennings, Andrew Berry, Dave T. Gerrard, Stephen J. Wearne, James Strutt, Sarah Withey, Mariya Chhatriwala, Karen Piper Hanley, Ludovic Vallier, Nicoletta Bobola, Neil A. Hanley
Software Mentions: 6
Published: over 8 years ago

10.1098/rspb.2019.0804

Anthropogenic remediation of heavy metals selects against natural microbial remediation
Cited by: 11
Author(s): Elze Hesse, Daniel Padfield, Florian Bayer, Eleanor M. van Veen, Christopher G. Bryan, Angus Buckling
Software Mentions: 6
Published: about 7 years ago

10.1002/2211-5463.12327

Multiple-cumulative probabilities used to cluster and visualize transcriptomes
Cited by: 4
Author(s): Xueping Jia, Yisu Liu, Qiuhong Han, Lu Zhang
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2015.01038

Turbulence-driven shifts in holobionts and planktonic microbial assemblages in St. Peter and St. Paul Archipelago, Mid-Atlantic Ridge, Brazil
Cited by: 10
Author(s): Ana Paula B. Moreira, Pedro Milet Meirelles, Eidy de Oliveira Santos, Gilberto M. Amado‐Filho, Ronaldo B. Francini‐Filho, Cristiane C. Thompson, Fabiano L. Thompson
Software Mentions: 6
Published: almost 11 years ago

10.1371/journal.pcbi.1008491

Predictive network modeling in human induced pluripotent stem cells identifies key driver genes for insulin responsiveness
Cited by: 14
Author(s): Iván Cárcamo-Orive, Marc Henrion, Kuixi Zhu, Noam D. Beckmann, Paige Cundiff, Sara Moein, Zenan Zhang, Melissa Alamprese, Sunita L. D’Souza, Martin Wabitsch, Eric E. Schadt, Thomas Quertermous, Joshua W. Knowles, Rui Chang
Software Mentions: 6
Published: over 5 years ago

10.3390/v13071197

Leveraging Novel Integrated Single-Cell Analyses to Define HIV-1 Latency Reversal
Cited by: 3
Author(s): Suhui Zhao, Athe Tsibris
Software Mentions: 6
Published: about 5 years ago

10.1186/s12882-019-1494-8

Use of estimated glomerular filtration rate to predict incident chronic kidney disease in patients at risk of cardiovascular disease: a retrospective study
Cited by: 8
Author(s): Saif Al-Shamsi, Abderrahim Oulhaj, Dybesh Regmi, Romona Devi Govender
Software Mentions: 6
Published: almost 7 years ago

10.1002/1878-0261.12062

Methylation profiling of paediatric pilocytic astrocytoma reveals variants specifically associated with tumour location and predictive of recurrence
Cited by: 14
Author(s): Alexandra Sexton-Oates, Andrew Dodgshun, Volker Hovestadt, David Jones, David M. Ashley, Michael J. Sullivan, Duncan MacGregor, Richard Saffery
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12885-021-08520-1

Computational analysis for identification of early diagnostic biomarkers and prognostic biomarkers of liver cancer based on GEO and TCGA databases and studies on pathways and biological functions affecting the survival time of liver cancer
Cited by: 21
Author(s): Shuangquan Gao, Jian Gang, Man Yu, Guiliang Xin, Huixin Tan
Software Mentions: 6
Published: almost 5 years ago

10.1098/rstb.2020.0366

Phanerozoic parasitism and marine metazoan diversity: dilution versus amplification
Cited by: 16
Author(s): Kenneth De Baets, John Warren Huntley, Daniele Scarponi, Adiël A. Klompmaker, Aleksandra Skawina
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.3213

Pollination by the locally endangered island flying fox (<i>Pteropus hypomelanus</i>) enhances fruit production of the economically important durian (<i>Durio zibethinus</i>)
Cited by: 65
Author(s): Sheema Abdul Aziz, Gopalasamy Reuben Clements, Kim R. McConkey, Tuanjit Sritongchuay, Saifful Pathil, Muhammad Nur Hafizi Abu Yazid, Ahimsa Campos‐Arceiz, Pierre‐Michel Forget, Sara Bumrungsri
Software Mentions: 6
Published: almost 9 years ago

10.7717/peerj.8412

Prognostic analysis of very early onset pancreatic cancer: a population-based analysis
Cited by: 3
Author(s): Dongjun Dai, Yanmei Wang, Xinyang Hu, Hongchuan Jin, Xian Wang
Software Mentions: 6
Published: over 6 years ago

10.1186/s13229-019-0263-7

A multifaceted approach for analyzing complex phenotypic data in rodent models of autism
Cited by: 5
Author(s): Ishita Das, Marcel A. Estévez, Anjali A. Sarkar, Sharmila Banerjee-Basu
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0096376

Large Sex Differences in Chicken Behavior and Brain Gene Expression Coincide with Few Differences in Promoter DNA-Methylation
Cited by: 38
Author(s): Daniel Nätt, Beatrix Agnvall, Per Jensen
Software Mentions: 6
Published: about 12 years ago

10.1186/s12967-018-1751-9

Longitudinal genome-wide DNA methylation analysis uncovers persistent early-life DNA methylation changes
Cited by: 37
Author(s): Raúl Fernández Pérez, Pablo Santamarina, Juan Ramón Tejedor, Rocío G. Urdinguio, Julio Álvarez, P. Redon, Agustín F. Fernández, Mario F. Fraga, Empar Lurbe
Software Mentions: 6
Published: over 7 years ago

10.1186/s12859-021-04189-2

A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients
Cited by: 11
Author(s): Eskezeia Y. Dessie, Jeffrey J. P. Tsai, Jan‐Gowth Chang, Ka-Lok Ng
Software Mentions: 6
Published: about 5 years ago

10.1002/ece3.2651

Multiscale habitat relationships of snowshoe hares (<i><scp>L</scp>epus americanus</i>) in the mixed conifer landscape of the <scp>N</scp>orthern <scp>R</scp>ockies, <scp>USA</scp>: Cross‐scale effects of horizontal cover with implications for forest management
Cited by: 21
Author(s): Joseph D. Holbrook, John R. Squires, Lucretia E. Olson, Rick L. Lawrence, Shannon L. Savage
Software Mentions: 6
Published: over 9 years ago

10.3390/md17020081

Predicting Blood–Brain Barrier Permeability of Marine-Derived Kinase Inhibitors Using Ensemble Classifiers Reveals Potential Hits for Neurodegenerative Disorders
Cited by: 28
Author(s): Fabien Plisson, Andrew M. Piggott
Software Mentions: 6
Published: over 7 years ago

10.1186/s12915-020-00842-z

Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo
Cited by: 19
Author(s): Jialin Liu, Michael Frochaux, Vincent Gardeux, Bart Deplancke, Marc Robinson‐Rechavi
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12859-016-1104-8

SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis
Cited by: 75
Author(s): Masaomi Hatakeyama, Lennart Opitz, Giancarlo Russo, Weihong Qi, Ralph Schlapbach, Hubert Rehrauer
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pcbi.1008685

ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways
Cited by: 9
Author(s): Agatha Treveil, Balázs Bohár, Padhmanand Sudhakar, Lejla Gul, Luca Csabai, Márton Ölbei, Martina Poletti, Matthew Madgwick, Tahila Andrighetti, Isabelle Hautefort, Dezső Módos, Tamás Korcsmáros
Software Mentions: 6
Published: over 5 years ago

10.1001/jamanetworkopen.2019.8116

Assessment of Therapeutic Interventions and Lung Protective Ventilation in Patients With Moderate to Severe Acute Respiratory Distress Syndrome
Cited by: 58
Author(s): Hiroko Aoyama, Kanji Uchida, Kazuyoshi Aoyama, Petros Pechlivanoglou, Marina Englesakis, Yosuke Yamada, Eddy Fan
Software Mentions: 6
Published: almost 7 years ago

10.1093/femsec/fiz108

Diversity of tryptophan halogenases in sponges of the genus Aplysina
Cited by: 9
Author(s): Johanna Gutleben, Jasper J. Koehorst, Kyle McPherson, Shirley A. Pomponi, René H. Wijffels, Hauke Smidt, Detmer Sipkema
Software Mentions: 6
Published: about 7 years ago

10.15252/emmm.202012118

The mutational landscape of the <scp>SCAN</scp> ‐B real‐world primary breast cancer transcriptome
Cited by: 30
Author(s): Christian Brueffer, Sergii Gladchuk, Christof Winter, Johan Vallon‐Christersson, Cecilia Hegardt, Jari Häkkinen, Anthony George, Yilun Chen, Anna Ehinger, Christer Larsson, Niklas Loman, Martin Malmberg, Lisa Rydén, Åke Borg, Lao H. Saal
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12885-021-08341-2

Identification of the prognostic value of ferroptosis-related gene signature in breast cancer patients
Cited by: 55
Author(s): Ding Wang, Guodong Wei, Jiangwei Ma, Shuai Cheng, Longyuan Jia, Xinyue Song, Ming Zhang, Mingyi Ju, Lin Wang, Lin Zhao, Shijie Xin
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-017-19059-2

Consensus Clustering of temporal profiles for the identification of metabolic markers of pre-diabetes in childhood (EarlyBird 73)
Cited by: 4
Author(s): Mario Lauria, Maria Persico, N. Ðorđević, Ornella Cominetti, Alice Matone, Joanne Hosking, Alison Jeffery, Jonathan Pinkney, Laeticia Da Silva, Corrado Priami, Ivan Montoliu, François‐Pierre J. Martin
Software Mentions: 6
Published: over 8 years ago

10.3389/fcell.2020.00234

Recent Advances in Computer-Assisted Algorithms for Cell Subtype Identification of Cytometry Data
Cited by: 17
Author(s): Peng Liu, Silvia Liu, Yusi Fang, Xiangning Xue, Jian Zou, George C. Tseng, Liza Konnikova
Software Mentions: 6
Published: about 6 years ago

10.3390/s20133647

Comparing Person-Specific and Independent Models on Subject-Dependent and Independent Human Activity Recognition Performance
Cited by: 4
Author(s): Sebastian Scheurer, Salvatore Tedesco, Brendan O’Flynn, Kenneth N. Brown
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2342-8-10

Internet Image Viewer (iiV)
Cited by: 9
Author(s): Joel T. Lee, Kristin Munch, John V. Carlis, José V. Pardo
Software Mentions: 6
Published: about 18 years ago

10.1186/s13059-019-1837-6

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Cited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0193759

Sharing-based social capital associated with harvest production and wealth in the Canadian Arctic
Cited by: 25
Author(s): Elspeth Ready
Software Mentions: 6
Published: over 8 years ago

10.1128/mBio.02146-20

Bacteria Contribute to Plant Secondary Compound Degradation in a Generalist Herbivore System
Cited by: 20
Author(s): Charlotte B. Francoeur, Lily Khadempour, Rolando D. Moreira-Soto, Kirsten Gotting, Adam J. Book, Adrián A. Pinto‐Tomás, Ken Keefover‐Ring, Cameron R. Currie
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1007162

Cross-species functional modules link proteostasis to human normal aging
Cited by: 10
Author(s): Andrea Komljenović, Hao Li, Vincenzo Sorrentino, Zoltán Kutalik, Johan Auwerx, Marc Robinson‐Rechavi
Software Mentions: 6
Published: about 7 years ago

10.1002/ecy.3275

Eutrophication induces shifts in the trophic position of invertebrates in aquatic food webs
Cited by: 19
Author(s): Gea H. van der Lee, J. Arie Vonk, Ralf Verdonschot, Michiel H.S. Kraak, P.F.M. Verdonschot, Jef Huisman
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/9591670

Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction
Cited by: 31
Author(s): Syed Nisar Hussain Bukhari, Amit Jain, Ehtishamul Haq, Moaiad Ahmad Khder, Rahul Neware, Jyoti Bhola, Moslem Lari Najafi
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.molmet.2020.101067

Gut microbiota impairs insulin clearance in obese mice
Cited by: 24
Author(s): Kevin P. Foley, Soumaya Zlitni, Brittany M. Duggan, Nicole G. Barra, Fernando F. Anhê, Joseph F. Cavallari, Brandyn D. Henriksbo, Cassandra Y. Chen, Michael Huang, Trevor C. Lau, Roxanne Plante, Michael Schwab, André Marette, Jonathan D. Schertzer
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/5552623

Integrative Functional Genomic Analysis of Molecular Signatures and Mechanistic Pathways in the Cell Cycle Underlying Alzheimer’s Disease
Cited by: 5
Author(s): Zhike Zhou, Jun Bai, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: almost 5 years ago

10.1155/2021/5545261

Ndufs1 Deficiency Aggravates the Mitochondrial Membrane Potential Dysfunction in Pressure Overload-Induced Myocardial Hypertrophy
Cited by: 17
Author(s): Rongjun Zou, Jun Tao, Junxiong Qiu, Wu Shi, Ming‐Hui Zou, Weidan Chen, Wenlei Li, Na Zhou, Shaoli Wang, Li Ma, Xinxin Chen
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-11-380

R-Gada: a fast and flexible pipeline for copy number analysis in association studies
Cited by: 48
Author(s): Roger Piqué-Regi, Alejandro Cáceres, Juan R. González
Software Mentions: 6
Published: almost 16 years ago

10.7717/peerj.7141

Comparison of soil bacterial community and functional characteristics following afforestation in the semi-arid areas
Cited by: 27
Author(s): Jiaojiao Deng, Yan Zhang, You Yin, Xu Zhu, Wenxu Zhu, Yongbin Zhou
Software Mentions: 6
Published: about 7 years ago

10.3389/fonc.2019.01485

The Potential of Radiomics Nomogram in Non-invasively Prediction of Epidermal Growth Factor Receptor Mutation Status and Subtypes in Lung Adenocarcinoma
Cited by: 31
Author(s): Wei Zhao, Ying Wu, Yanan Xu, Yingli Sun, Pan Gao, Min Tan, Wenrui Ma, Cheng Li, Liang Jin, Yanqing Hua, Jun Liu, Ming Li
Software Mentions: 6
Published: over 6 years ago

10.1534/genetics.116.195008

A Bayesian Approach for Analysis of Whole-Genome Bisulfite Sequencing Data Identifies Disease-Associated Changes in DNA Methylation
Cited by: 12
Author(s): Owen J. L. Rackham, Sarah R. Langley, Thomas Oates, Eleni Vradi, Nathan Harmston, Prashant K. Srivastava, Jacques Behmoaras, Πέτρος Δελλαπόρτας, Leonardo Bottolo, Enrico Petretto
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0162325

Striking Phenotypic Variation yet Low Genetic Differentiation in Sympatric Lake Trout (Salvelinus namaycush)
Cited by: 18
Author(s): Kia Marin, Andrew Coon, Robert Spencer Carson, Paul V. Debes, Dylan J. Fraser
Software Mentions: 6
Published: almost 10 years ago

10.1242/dmm.041947

Temporal evolution of the microbiome, immune system, and epigenome with disease progression in ALS mice
Cited by: 44
Author(s): Claudia Figueroa‐Romero, Kai Guo, Benjamin J. Murdock, Ximena Paez-Colasante, Christine M. Bassis, Kristen A. Mikhail, Kristen D. Raue, Matthew C. Evans, Ghislaine F. Taubman, Andrew J. McDermott, Phillipe D. O’Brien, Masha G. Savelieff, Junguk Hur, Eva L. Feldman
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0201786

Multi-scale habitat preference analyses for Azorean blue whales
Cited by: 18
Author(s): Luis Pericot García, Graham J. Pierce, Emmanuelle Autret, Jesús Manuel Torres Palenzuela
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41598-021-90733-2

Inferring long-distance connectivity shaped by air-mass movement for improved experimental design in aerobiology
Cited by: 11
Author(s): Maria Choufany, Davide Martinetti, Samuel Soubeyrand, Cindy E. Morris
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.635324

Construction and Validation of a Universal Applicable Prognostic Signature for Gastric Cancer Based on Seven Immune-Related Gene Correlated With Tumor Associated Macrophages
Cited by: 14
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 6
Published: about 5 years ago

10.21203/rs.3.rs-362886/v1

Maternal-Fetal Immune Responses in Pregnant Women Infected with SARS-CoV-2
Cited by: 6
Author(s): Valeria Garcia‐Flores, Roberto Romero, Yi Xu, Kevin R. Theis, Marcia Arenas-Hernández, Derek Miller, Azam Peyvandipour, José Galaz, Dustyn Levenson, Gaurav Bhatti, Meyer Gershater, Errile Pusod, David Kracht, Violetta Florova, Yaozhu Leng, Tao Li, Megan Faucett, Robert Para, Chaur‐Dong Hsu, Gary Zhang, Adi L. Tarca, Roger Piqué-Regi, Nardhy Gomez-López
Software Mentions: 6
Published: over 5 years ago

10.7150/thno.41219

ATRX/EZH2 complex epigenetically regulates FADD/PARP1 axis, contributing to TMZ resistance in glioma
Cited by: 55
Author(s): Bo Han, Xiangqi Meng, Pengfei Wu, Ziwei Li, Siyi Li, Yangong Zhang, Caijun Zha, Qile Ye, Chuanlu Jiang, Jinquan Cai, Tao Jiang
Software Mentions: 6
Published: over 6 years ago

10.5334/jors.166

Web Tool for Navigating and Plotting SomaLogic ADAT Files
Cited by: 19
Author(s): Foo Cheung, Giovanna Fantoni, Maria Conner, Brian Sellers, Yuri Kotliarov, Julián Candia, Katherine E. Stagliano, Angélique Biancotto
Software Mentions: 6
Published: almost 9 years ago

10.1093/hmg/ddv449

Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation
Cited by: 42
Author(s): Isabel Mendizabal, Soojin V. Yi
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pgen.1006279

Gain- and Loss-of-Function Mutations in the Breast Cancer Gene GATA3 Result in Differential Drug Sensitivity
Cited by: 43
Author(s): Barbara Mair, Tomasz Konopka, Claudia Kerzendorfer, Katia Sleiman, Šejla Šalic, Violeta Serra, Markus K. Muellner, Vassiliki Théodorou, Sebastian M. Nijman
Software Mentions: 6
Published: almost 10 years ago

10.1038/s41389-019-0158-7

HSP90/AXL/eIF4E-regulated unfolded protein response as an acquired vulnerability in drug-resistant KRAS-mutant lung cancer
Cited by: 35
Author(s): Haitang Yang, Shun-Qing Liang, Duo Xu, Yang Zhang, Thomas Marti, Yanyun Gao, Gregor J. Kocher, Heng Zhao, Ralph A. Schmid, Ren‐Wang Peng
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12967-020-02260-9

Identification of key genes controlling breast cancer stem cell characteristics via stemness indices analysis
Cited by: 42
Author(s): Jianying Pei, Yanxia Wang, Yan Li
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0239495

Sources of variation in cell-type RNA-Seq profiles
Cited by: 16
Author(s): Johan Gustafsson, Felix Held, Jonathan L. Robinson, Elias Björnson, Rebecka Jörnsten, Jens Nielsen
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13071-018-3024-0

Effect of DEET-multiple exposures on behavior and life history traits in the malaria mosquito Anopheles gambiae (s.s.)
Cited by: 9
Author(s): Margaux Mulatier, Ludovic P. Ahoua Alou, Fabrice Chandre, Cédric Pennetier, Laurent Dormont, Anna Cohuet
Software Mentions: 6
Published: almost 8 years ago

10.1186/s13059-021-02326-x

AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Cited by: 5
Author(s): Kyle Fletcher, Lin Zhang, Juliana Gil, Rongkui Han, Keri Cavanaugh, Richard W. Michelmore
Software Mentions: 6
Published: about 5 years ago

10.1155/2020/8468303

Investigation of the Potential Mechanism Governing the Effect of the Shen Zhu San on COVID-19 by Network Pharmacology
Cited by: 5
Author(s): Yuxuan Wang, Yuhua Ru, Guowei Zhuo, Maozheng Sheng, Shuangqiu Wang, Jiarui Ma, Guowei Zhou, Xiaohe Sun, Yanqi Zeng, Ya Zhang, Hui Li, Zhigang Lu, Depei Wu, Minghua Wu
Software Mentions: 6
Published: over 5 years ago

10.1186/s40462-021-00275-5

Individual and seasonal variation in the movement behavior of two tropical nectarivorous birds
Cited by: 4
Author(s): Jennifer Smetzer, Kristina L. Paxton, Eben H. Paxton
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12864-015-2324-4

Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout
Cited by: 10
Author(s): Henrique César Pereira Figueiredo, Siomar C. Soares, Felipe Luiz Pereira, Fernanda Alves Dorella, Alex F. Carvalho, Júnia Pacheco Teixeira, Vasco Azevedo, Carlos Augusto Gomes Leal
Software Mentions: 6
Published: over 10 years ago

10.1186/s40168-017-0389-9

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Cited by: 340
Author(s): Kyle Hartman, Marcel G. A. van der Heijden, Raphaël Wittwer, Samiran Banerjee, Jean Claude Walser, Klaus Schlaeppi
Software Mentions: 6
Published: over 8 years ago

10.3389/fonc.2021.698198

Interactions Between Adiponectin-Pathway Polymorphisms and Obesity on Postmenopausal Breast Cancer Risk Among African American Women: The WHI SHARe Study
Cited by: 3
Author(s): Gina Nam, Zuo-Feng Zhang, Jianyu Rao, Hua Zhou, Su Yon Jung
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.03891

Spontaneous symbiotic reprogramming of plant roots triggered by receptor-like kinases
Cited by: 68
Author(s): Martina Katharina Ried, Meritxell Antolín-Llovera, Martin Parniske
Software Mentions: 6
Published: over 11 years ago

10.7717/peerj.8548

Comprehensive analysis of long non-coding RNAs and mRNAs in skeletal muscle of diabetic Goto-Kakizaki rats during the early stage of type 2 diabetes
Cited by: 1
Author(s): Wenlu Zhang, Yunmeng Bai, Zixi Chen, Xingsong Li, Shuang Fu, Lizhen Huang, Shudai Lin, Hongli Du
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2021.623799

Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management
Cited by: 11
Author(s): Ahmad Nuruddin Khoiri, Supapon Cheevadhanarak, Jiraporn Jirakkakul, Sudarat Dulsawat, Peerada Prommeenate, Anuwat Tachaleat, Kanthida Kusonmano, Songsak Wattanachaisaereekul, Sawannee Sutheeworapong
Software Mentions: 6
Published: over 5 years ago

10.3390/insects11110746

Mutual and Opposing Responses of Carabid Beetles and Predatory Wasps to Local and Landscape Factors in Vineyards
Cited by: 7
Author(s): Deniz Uzman, Martin H. Entling, Ilona Leyer, Annette Reineke
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-94247-9

Automated scoring for a Tablet-based Rey Figure copy task differentiates constructional, organisational, and motor abilities
Cited by: 4
Author(s): Marco Alessandro Petilli, Roberta Daini, Francesca Lea Saibene, Marco Rabuffetti
Software Mentions: 6
Published: almost 5 years ago

10.1111/1365-2664.13519

Sulfoxaflor exposure reduces egg laying in bumblebees <i>Bombus terrestris</i>
Cited by: 40
Author(s): Harry Siviter, Jacob Horner, Mark J. F. Brown, Ellouise Leadbeater
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0108010

LncRBase: An Enriched Resource for lncRNA Information
Cited by: 58
Author(s): Sohini Chakraborty, Aritra Deb, Ranjan Kumar Maji, Sudipto Saha, Zhumur Ghosh
Software Mentions: 6
Published: almost 12 years ago

10.1186/s12864-017-3568-y

Conserved expression of transposon-derived non-coding transcripts in primate stem cells
Cited by: 41
Author(s): LeeAnn Ramsay, Maria C. Marchetto, Maxime Caron, Shu-Huang Chen, Stephan Busche, Tony Kwan, Tomi Pastinen, Fred H. Gage, Guillaume Bourque
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0234805

Erythrocyte sedimentation rate and hemoglobin-binding protein in free-living box turtles (Terrapene spp.)
Cited by: 6
Author(s): Laura Adamovicz, Sarah J. Baker, Ethan J. Kessler, Marta Kelly, Samantha Johnson, Janet Winter, Christopher A. Phillips, Matthew C. Allender
Software Mentions: 6
Published: about 6 years ago

10.3389/fpsyg.2018.02232

Analyzing Multivariate Dynamics Using Cross-Recurrence Quantification Analysis (CRQA), Diagonal-Cross-Recurrence Profiles (DCRP), and Multidimensional Recurrence Quantification Analysis (MdRQA) – A Tutorial in R
Cited by: 50
Author(s): Sebastian Wallot, G. G. Leonardi
Software Mentions: 6
Published: over 7 years ago

10.1242/jcs.259051

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription
Cited by: 0
Author(s): David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz
Software Mentions: 6
Published: almost 5 years ago

10.3389/fnins.2021.667011

Benchmarking Highly Parallel Hardware for Spiking Neural Networks in Robotics
Cited by: 5
Author(s): Lea Steffen, Robin Koch, Stefan Ulbrich, Sven Nitzsche, Arne Roennau, Rüdiger Dillmann
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0199758

Antipsychotic prescribing patterns on admission to and at discharge from a tertiary care program for treatment-resistant psychosis
Cited by: 7
Author(s): Lik Hang N. Lee, Ric M. Procyshyn, Ralph de Vere White, Todd S. Woodward, William G. Honer, Alasdair M. Barr
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12935-020-01635-8

A multi-parametric prognostic model based on clinical features and serological markers predicts overall survival in non-small cell lung cancer patients with chronic hepatitis B viral infection
Cited by: 4
Author(s): Shulin Chen, Hanqing Huang, Yijun Liu, Changchun Lai, Songguo Peng, Lei Zhou, Hao Chen, Yi‐Wei Xu, Xia He
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.02102

Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession
Cited by: 17
Author(s): Miao Wang, Erqin Li, Chen Liu, Alexandre Jousset, Joana Falcão Salles
Software Mentions: 6
Published: over 8 years ago

10.1128/mBio.02495-18

The Transcriptional Cycle Is Suited to Daytime N ₂ Fixation in the Unicellular Cyanobacterium “ <i>Candidatus</i> Atelocyanobacterium thalassa” (UCYN-A)
Cited by: 28
Author(s): María del Carmen Muñoz-Marín, Irina N. Shilova, Tianshu Shi, Hanna Farnelid, Ana María Cabello, Jonathan P. Zehr
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2020.00803

Slug Feeding Triggers Dynamic Metabolomic and Transcriptomic Responses Leading to Induced Resistance in Solanum dulcamara
Cited by: 3
Author(s): Onno W Calf, Tobias Lortzing, Alexander Weinhold, Yvonne Poeschl, Janny L. Peters, Heidrun Huber, Anke Steppuhn, Nicole M. van Dam
Software Mentions: 6
Published: about 6 years ago

10.1001/jamanetworkopen.2021.5723

Preconception Thyrotropin Levels and Risk of Adverse Pregnancy Outcomes in Chinese Women Aged 20 to 49 Years
Cited by: 13
Author(s): Ying Yang, Tonglei Guo, Jinrong Fu, Jian Kuang, Yuanyuan Wang, Zhang Ya, Honggang Zhang, Yuan He, Zuoqi Peng, Qiaomei Wang, Haiping Shen, Yiping Zhang, Donghai Yan, Xu Ma, Haixia Guan
Software Mentions: 6
Published: about 5 years ago

10.3389/fpls.2020.570436

Insights Into the Regulation of the Expression Pattern of Calvin-Benson-Bassham Cycle Enzymes in C3 and C4 Grasses
Cited by: 1
Author(s): Chidi Afamefule, Christine A. Raines
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8833438

Systematic Investigation of mRNA N6-Methyladenosine Machinery in Primary Prostate Cancer
Cited by: 7
Author(s): Mei Jiang, Yu‐Chuan Lu, Dongxia Duan, Hongxiang Wang, Gaoya Man, Ching Kang, Kesaier Abulimiti, Yao Li
Software Mentions: 6
Published: over 5 years ago

10.3390/genes12060898

A Literature-Derived Knowledge Graph Augments the Interpretation of Single Cell RNA-seq Datasets
Cited by: 4
Author(s): Deeksha Doddahonnaiah, Patrick Lenehan, Travis Hughes, David Zemmour, Enrique Garcia-Rivera, A J Venkatakrishnan, Ramakrishna Chilaka, Apoorv Khare, Akhil Kasaraneni, Abhinav Garg, Akash Anand, Rakesh Barve, Viswanathan Thiagarajan, Venky Soundararajan
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2019.00221

Non-coding and Coding Transcriptional Profiles Are Significantly Altered in Pediatric Retinoblastoma Tumors
Cited by: 25
Author(s): Swetha Rajasekaran, Lakshmi Dhevi N. Selvan, Kathleen Dotts, Ranjith Kumar, Pukhraj Rishi, Vikas Khetan, Madhoolika Bisht, Karthikeyan Sivaraman, Subrmanian Krishnakumar, Debashis Sahoo, Moray J. Campbell, Sailaja Elchuri, Wayne Miles
Software Mentions: 6
Published: about 7 years ago

10.3389/fneur.2020.00729

Googling the Lifetime Risk of Stroke Around the World
Cited by: 3
Author(s): Thanh G. Phan, Anisha Haseeb, Richard Beare, Velandai Srikanth, Amanda G Thrift, Henry Ma
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0204970

Network of small no-take marine reserves reveals greater abundance and body size of fisheries target species
Cited by: 28
Author(s): Fernanda A. Rolim, Tim Langlois, Pedro Furtado Costa Rodrigues, Todd Bond, Fábio S. Motta, Leonardo Mitrano Neves, Otto Bismarck Fazzano Gadig
Software Mentions: 6
Published: over 7 years ago

10.1186/s13012-020-01033-8

Proceedings of the Fifth Biennial Conference of the Society for Implementation Research Collaboration (SIRC) 2019: where the rubber meets the road: the intersection of research, policy, and practice - part 2
Cited by: 0
Author(s):
Software Mentions: 6
Published: almost 6 years ago