Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.7150/ijbs.46645
https://doi.org/10.7150/ijbs.46645
Identification of a novel cancer stem cell subpopulation that promotes progression of human fatal renal cell carcinoma by single-cell RNA-seq analysis
Cited by: 25
Author(s): Xiuwu Pan, Hao Zhang, Da Xu, Jiaxin Chen, Wen-jin Chen, Sishun Gan, Fajun Qu, Chuanmin Chu, Jun Cao, Yong Fan, Shumin Xu, Jianqing Ye, Zhou Wang, Xingang Cui
Published: over 4 years ago
Software Mentions 6
bioconductor: AUCell
AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Papers that mentioned: 45
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq dataPapers that mentioned: 893
bioconductor: RcisTarget
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic regionsPapers that mentioned: 55
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.Papers that mentioned: 893