Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.29032.2

https://doi.org/10.12688/f1000research.29032.2

Sustainable data analysis with Snakemake

Cited by: 502
Author(s): Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher H. Tomkins-Tinch, Vanessa Sochat, Jan Förster, Soohyun Lee, Sven Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
Published: over 3 years ago

Software Mentions 6

cran: Julia

Fractal Image Data Generator
Papers that mentioned: 304

pypi: conda

OS-agnostic, system-level binary package manager.
Papers that mentioned: 92

pypi: Jug

A Task Based Parallelization Framework
Papers that mentioned: 2

pypi: shell

A better way to run shell commands in Python.
Papers that mentioned: 207

pypi: snakefmt

The uncompromising Snakemake code formatter
Papers that mentioned: 1

pypi: snakemake

Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45