Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.3389/fmicb.2019.00745
https://doi.org/10.3389/fmicb.2019.00745
Cited by: 22
Author(s): Zachary M. Burcham, Jennifer L. Pechal, Carl J. Schmidt, Jeffrey L. Bose, Jason W. Rosch, M. Eric Benbow, Heather R. Jordan
Published: about 5 years ago
Software Mentions 6
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
pypi: car
Papers that mentioned: 1,651pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306