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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pone.0239495

https://doi.org/10.1371/journal.pone.0239495

Sources of variation in cell-type RNA-Seq profiles

Cited by: 16
Author(s): Johan Gustafsson, Felix Held, Jonathan L. Robinson, Elias Björnson, Rebecka Jörnsten, Jens Nielsen
Published: almost 5 years ago

Software Mentions 6

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
Very Likely Science (90)
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
Very Likely Science (100)
bioconductor: variancePartition
Quantify and interpret drivers of variation in multilevel gene expression experiments
Papers that mentioned: 25
Very Likely Science (100)