Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13072-021-00411-w

https://doi.org/10.1186/s13072-021-00411-w

Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion

Cited by: 4
Author(s): Arkadiy K. Golov, Anastasia V. Golova, А. В. Гаврилов, Sergey V. Razin
Published: over 3 years ago

Software Mentions 6

bioconductor: rhdf5
R Interface to HDF5
Papers that mentioned: 7
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
pypi: cooler
Sparse binary format for genomic interaction matrices.
Papers that mentioned: 7
pypi: hicrep
Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with sparse contact matrix support
Papers that mentioned: 3
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045