Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: hicrep

https://packages.ecosyste.ms/registries/pypi.org/packages/hicrep

Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with sparse contact matrix support
16 versions
Latest release: about 3 years ago
26 downloads last month

Papers Mentioning hicrep 3

10.1186/s13072-021-00411-w
Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion
Cited by: 4
Author(s): Arkadiy K. Golov, Anastasia V. Golova, А. В. Гаврилов, Sergey V. Razin
Software Mentions: 6
Published: over 3 years ago
10.3389/fgene.2021.673530
Profiling of 3D Genome Organization in Nasopharyngeal Cancer Needle Biopsy Patient Samples by a Modified Hi-C Approach
Cited by: 3
Author(s): Sambhavi Animesh, Ruchi Choudhary, Bertrand Jern Han Wong, Charlotte Tze Jia Koh, Xin Yi Ng, J. S. H. Tay, Wan-Qin Chong, Jian Han, Leilei Chen, Boon Cher Goh, Melissa J. Fullwood
Software Mentions: 6
Published: over 3 years ago
10.1016/j.stem.2019.02.004
Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance
Cited by: 66
Author(s): Jessica Bertolini, Rebecca Favaro, Yanfen Zhu, Miriam Pagin, Chew Yee Ngan, Chee-Hong Wong, Harianto Tjong, Marit W. Vermunt, Ben Martynoga, Cristiana Barone, Jessica Mariani, Marcos J. Cardozo, Noemí Tabanera, Federico Zambelli, Sara Mercurio, Sergio Ottolenghi, Paul Robson, Menno P. Creyghton, Paola Bovolenta, Giulio Pavesi, François Guillemot, Silvia K. Nicolis, Chia‐Lin Wei
Software Mentions: 3
Published: almost 6 years ago