Projects: pypi: cooler
https://packages.ecosyste.ms/registries/pypi.org/packages/cooler
Sparse binary format for genomic interaction matrices.
45 versions
Latest release: almost 2 years ago
13 dependent packages
3,152 downloads last month
Science Score: 80/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (80)
Papers Mentioning cooler 7
10.1186/s13072-021-00411-w
Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusionCited by: 4
Author(s): Arkadiy K. Golov, Anastasia V. Golova, А. В. Гаврилов, Sergey V. Razin
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pgen.1009691
Induction of a chromatin boundary in vivo upon insertion of a TAD borderCited by: 11
Author(s): Andréa Willemin, Lucille Lopez-Delisle, Christopher Chase Bolt, Marie-Laure Gadolini, Denis Duboule, Eddie Rodríguez-Carballo
Software Mentions: 6
Published: about 4 years ago
10.1186/s12915-018-0608-2
Migration through a small pore disrupts inactive chromatin organization in neutrophil-like cellsCited by: 35
Author(s): Elsie C. Jacobson, Jo K. Perry, David S. Long, Ada L. Olins, Bryon E. Wright, Mark H. Vickers, Justin M. O’Sullivan
Software Mentions: 6
Published: over 6 years ago
10.1186/s13059-020-01986-5
HiNT: a computational method for detecting copy number variations and translocations from Hi-C dataCited by: 43
Author(s): Wang Su, Soohyun Lee, Chong Chu, Dhawal Jain, Peter Kerpedjiev, Geoffrey M. Nelson, Jennifer Walsh, B. Alver, Peter J. Park
Software Mentions: 4
Published: over 5 years ago
10.1016/j.isci.2021.102741
Derepression of inflammation-related genes link to microglia activation and neural maturation defect in a mouse model of Kleefstra syndromeCited by: 3
Author(s): Ayumi Yamada, Takae Hirasawa, Kayako Nishimura, Chikako Shimura, Naomi Kogo, Kei Fukuda, Madoka Kato, Masaki Yokomori, Tetsutaro Hayashi, Mana Umeda, Mika Yoshimura, Yoichiro Iwakura, Itoshi Nikaido, Shigeyoshi Itohara, Yoichi Shinkai
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-021-83903-9
Erythrocytes 3D genome organization in vertebratesCited by: 10
Author(s): Anastasia Ryzhkova, Alena Taskina, А. А. Хабарова, Veniamin Fishman, Nariman Battulin
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.9566
Cumulative contact frequency of a chromatin region is an intrinsic property linked to its functionCited by: 2
Author(s): Margarita D Samborskaia, Aleksandra A. Galitsyna, Ilya A. Pletenev, Anna Trofimova, Andrey A. Mironov, Mikhail S. Gelfand, Ekaterina E. Khrameeva
Software Mentions: 1
Published: almost 5 years ago