Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1009691

https://doi.org/10.1371/journal.pgen.1009691

Cited by: 11
Author(s): Andréa Willemin, Lucille Lopez-Delisle, Christopher Chase Bolt, Marie-Laure Gadolini, Denis Duboule, Eddie Rodríguez-Carballo
Published: almost 3 years ago

Software Mentions 6

cran: fasta

Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848

pypi: cooler

Sparse binary format for genomic interaction matrices.
Papers that mentioned: 7

pypi: cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562

pypi: fasta

The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779

pypi: pyGenomeTracks

Command-line tool to make beautiful and reproducible genome browser snapshots
Papers that mentioned: 20