Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: rhdf5

https://packages.ecosyste.ms/registries/bioconductor.org/packages/rhdf5

R Interface to HDF5
2 versions
Latest release: about 1 year ago
63 dependent packages
1,833,991 downloads total

Papers Mentioning rhdf5 7

10.1186/s12859-015-0683-0

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data
Cited by: 172
Author(s): Aaron T. L. Lun, Gordon K. Smyth
Software Mentions: 14
Published: about 9 years ago

Species Dependence of SYTO 9 Staining of Bacteria
Cited by: 20
Author(s): Cushla McGoverin, Julia Robertson, Yaqub Jonmohamadi, Simon Swift, Frédérique Vanholsbeeck
Software Mentions: 10
Published: about 4 years ago

10.1186/s13072-021-00411-w

Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion
Cited by: 4
Author(s): Arkadiy K. Golov, Anastasia V. Golova, А. В. Гаврилов, Sergey V. Razin
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-018-2238-7

GenoGAM 2.0: scalable and efficient implementation of genome-wide generalized additive models for gigabase-scale genomes
Cited by: 1
Author(s): Georg Stricker, Mathilde Galinier, Julien Gagneur
Software Mentions: 6
Published: over 6 years ago

10.1186/s13059-019-1856-3

NanoSatellite: accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION
Cited by: 47
Author(s): Arne De Roeck, Wouter De Coster, Liene Bossaerts, Rita Cacace, Tim De Pooter, Jasper Van Dongen, Svenn D’Hert, Peter De Rijk, Mojca Stražišar, Christine Van Broeckhoven, Kristel Sleegers
Software Mentions: 5
Published: almost 5 years ago

10.3390/microorganisms9050924

Rapid Detection of Escherichia coli Antibiotic Susceptibility Using Live/Dead Spectrometry for Lytic Agents
Cited by: 8
Author(s): Julia Robertson, Cushla McGoverin, Joni Renee White, Frédérique Vanholsbeeck, Simon Swift
Software Mentions: 2
Published: over 3 years ago

10.3390/genes9060274

Transitions from Single- to Multi-Locus Processes during Speciation with Gene Flow
Cited by: 26
Author(s): M. Schilling, Sean P. Mullen, Marcus R. Kronforst, Rebecca J. Safran, Patrik Nosil, Jeffrey L. Feder, Zachariah Gompert, Samuel M. Flaxman
Software Mentions: 2
Published: over 6 years ago