10.1111/eva.12959

Rapid adaptation (or not) in restored plant populations
Cited by: 4
Author(s): Susan M. Magnoli
Software Mentions: 8
Published: about 6 years ago

10.1038/s41598-020-67870-1

Investigating the influence of mtDNA and nuclear encoded mitochondrial variants on high intensity interval training outcomes
Cited by: 6
Author(s): Nicholas R. Harvey, Sarah Voisin, Rodney Arthur Lea, Xu Yan, Miles C. Benton, ID Papadimitriou, Jacques Michaux, Larisa M. Haupt, Kevin J. Ashton, Nir Eynon, Lyn R. Griffiths
Software Mentions: 8
Published: almost 6 years ago

10.3389/fnhum.2019.00066

Finger Temperature: A Psychophysiological Assessment of the Attentional State
Cited by: 1
Author(s): Rodrigo C. Vergara, Cristóbal Moënne‐Loccoz, Camila Ávalos, Juan Ignacio Egaña, Pedro Maldonado
Software Mentions: 8
Published: over 7 years ago

10.3389/fmicb.2020.00103

Resistance Evolution Against Antimicrobial Peptides in Staphylococcus aureus Alters Pharmacodynamics Beyond the MIC
Cited by: 40
Author(s): Baydaa El Shazely, Guozhi Yu, Paul R. Johnston, Jens Rolff
Software Mentions: 8
Published: over 6 years ago

10.1038/sdata.2019.34

Global transcriptome analysis of pig induced pluripotent stem cells derived from six and four reprogramming factors
Cited by: 11
Author(s): T. Fukuda, Keiko Doi, Kenichiro Donai, Kazumasa Takahashi, Hisato Kobayashi, Takashi Hirano, Katsuhiko Nishimori, Hiroshi Yasue
Software Mentions: 8
Published: over 7 years ago

10.3390/cells9030786

Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data Integration
Cited by: 13
Author(s): Jingxin Tao, Youjin Hao, Xudong Li, Huachun Yin, Xiner Nie, Jie Zhang, Bo-Ying Xu, Chen Qiao, Bo Li
Software Mentions: 8
Published: over 6 years ago

10.1007/s00122-020-03667-0

Differential expression of transcription factor- and further growth-related genes correlates with contrasting cluster architecture in Vitis vinifera ‘Pinot Noir’ and Vitis spp. genotypes
Cited by: 6
Author(s): Robert Richter, Susanne Rossmann, Doreen Gabriel, Reinhard Töpfer, Klaus Theres, Eva Zyprian
Software Mentions: 8
Published: almost 6 years ago

10.3389/fpls.2020.00315

Different Patterns of Ecological Divergence Between Two Tetraploids and Their Diploid Counterpart in a Parapatric Linear Coastal Distribution Polyploid Complex
Cited by: 13
Author(s): Mariana Castro, João Loureiro, Albano Figueiredo, Miguel Serrano, Brian C. Husband, Sílvia Castro
Software Mentions: 8
Published: over 6 years ago

10.18332/tid/105846

Dispositional mindfulness, affect and tobacco dependence among treatment naive cigarette smokers in Brazil
Cited by: 2
Author(s): Isabel Weiss de Souza, Elisa Harumi Kozasa, Luane Araújo Rabello, Beatriz Mattozo, Sarah Bowen, Kimber P. Richter, Laisa Marcorela Andreoli Sartes, Ana Regina Noto
Software Mentions: 8
Published: about 7 years ago

10.3390/nu11122892

Dietary Determinants of Metabolic Syndrome Parameters Differ by Gender in College Students
Cited by: 4
Author(s): Sara Saltzgiver, Alexander Nielson, Heidi Costello, Adam Baker, Julian Chan, David Aguilar
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-019-50858-x

Landscape determinants of density of blacklegged ticks, vectors of Lyme disease, at the northern edge of their distribution in Canada
Cited by: 19
Author(s): Benoit Talbot, Andreea Slatculescu, Charles Thickstun, Jules K. Koffi, Patrick A. Leighton, Roman McKay, Manisha A. Kulkarni
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.7032

A comparison of two methods for estimating measurement repeatability in morphometric studies
Cited by: 2
Author(s): Zachariah Wylde, Russell Bonduriansky
Software Mentions: 8
Published: over 5 years ago

10.3389/fnins.2021.689188

Identification of the Potential Gene Regulatory Networks and Therapeutics in Aged Mice With Postoperative Neurocognitive Disorder
Cited by: 9
Author(s): Wensi Wu, Yongbo Peng, Jiaxin Zhou, Xiaojun Zhang, Lin Cao, Wei-Jye Lin, Yanan Lu, Jing Wen, Zhi Wang
Software Mentions: 8
Published: about 5 years ago

10.1186/s12964-021-00728-9

Multi-omics analysis of tumor angiogenesis characteristics and potential epigenetic regulation mechanisms in renal clear cell carcinoma
Cited by: 28
Author(s): Wenzhong Zheng, Shiqiang Zhang, Huan Guo, Xiaobao Chen, Zhangcheng Huang, Shaoqin Jiang, Mengqiang Li
Software Mentions: 8
Published: over 5 years ago

10.1080/16549716.2018.1440783

Health Equity Assessment Toolkit Plus (HEAT Plus): software for exploring and comparing health inequalities using uploaded datasets
Cited by: 42
Author(s): Ahmad Reza Hosseinpoor, Anne Schlotheuber, Devaki Nambiar, Zev Ross
Software Mentions: 8
Published: almost 8 years ago

10.1002/1878-0261.12381

A pan‐cancer atlas of cancer hallmark‐associated candidate driver lnc <scp>RNA</scp> s
Cited by: 19
Author(s): Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan, Gaoming Liao, Liwen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao, Xia Li
Software Mentions: 8
Published: over 7 years ago

10.1128/AEM.02755-17

Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities
Cited by: 45
Author(s): Prem K. Raghupathi, Jerneja Zupančič, Asker Brejnrod, Samuel Jacquiod, Kurt Houf, Mette Burmølle, Nina Gunde‐Cimerman, Søren J. Sørensen
Software Mentions: 8
Published: over 8 years ago

10.3389/fmolb.2021.711239

Identification of Hub Genes and Pathways Associated With Idiopathic Pulmonary Fibrosis via Bioinformatics Analysis
Cited by: 15
Author(s): Hanxi Wan, Xinwei Huang, Peilin Cong, Mengfan He, Aiwen Chen, Tingmei Wu, Danqing Dai, Wanrong Li, Xiao-Fei Gao, Tian Li, Huazheng Liang, Lize Xiong
Software Mentions: 8
Published: almost 5 years ago

10.3389/fmicb.2018.02621

Elevated CO2 Has Little Influence on the Bacterial Communities Associated With the pH-Tolerant Coral, Massive Porites spp.
Cited by: 18
Author(s): Paul A. O’Brien, Hillary A. Smith, Stewart Fallon, Katharina Fabricius, Bette L. Willis, Kathleen M. Morrow, David G. Bourne
Software Mentions: 8
Published: over 7 years ago

10.1186/s12870-019-2182-3

A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated to their microhabitat preference
Cited by: 9
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, León A. Bravo
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0242730

A comparison of penalised regression methods for informing the selection of predictive markers
Cited by: 14
Author(s): Christopher J Greenwood, George J. Youssef, Primrose Letcher, Jacqui A. Macdonald, Lauryn Hagg, Ann Sanson, Jennifer McIntosh, Delyse Hutchinson, John W. Toumbourou, Matthew Fuller‐Tyszkiewicz, Craig A. Olsson
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2019.01310

Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade Glioma
Cited by: 31
Author(s): Xiaoyun Deng, Dongdong Lin, Bo Chen, Xiaojia Zhang, Xingxing Xu, Zhisheng Yang, Xuchao Shen, Liang Yang, Xiaoyong Lu, Song Huang, Bo Yin, Nu Zhang, Jian Lin
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-96160-7

Wolves, dogs and humans in regular contact can mutually impact each other’s skin microbiota
Cited by: 6
Author(s): Stefanie U. Wetzels, Cameron Strachan, Beate Conrady, Martin Wagner, Iwan Burgener, Zsófia Virányi, Evelyne Selberherr
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.pone.0221167

Reconstructing systematic persistent impacts of promotional marketing with empirical nonlinear dynamics
Cited by: 6
Author(s): Ray Huffaker, Andrew Fearne
Software Mentions: 8
Published: almost 7 years ago

10.3897/BDJ.8.e47018

Rapid Least Concern: towards automating Red List assessments
Cited by: 25
Author(s): Steven P. Bachman, Barnaby E. Walker, Sara Bárrios, Alison Copeland, Justin Moat
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.5289

Disturbance history mediates climate change effects on subtropical forest biomass and dynamics
Cited by: 16
Author(s): Alexandre F. Souza, Solon Jonas Longhi
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0122070

Using Lidar Data to Analyse Sinkhole Characteristics Relevant for Understory Vegetation under Forest Cover—Case Study of a High Karst Area in the Dinaric Mountains
Cited by: 74
Author(s): Milan Kobal, Irena Bertoncelj, Jinhu Wang, Igor Dak̇skobler, Lado Kutnar
Software Mentions: 8
Published: over 11 years ago

10.3390/molecules24213987

Mechanism of Action of Non-Synonymous Single Nucleotide Variations Associated with α-Carbonic Anhydrase II Deficiency
Cited by: 19
Author(s): Taremekedzwa Allan Sanyanga, Bilal Nizami, Özlem Tastan Bishop
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-019-52241-2

Tradeoffs in the value of biodiversity feature and cost data in conservation prioritization
Cited by: 11
Author(s): Amanda D. Rodewald, Matthew Strimas‐Mackey, Richard Schuster, Peter Arcese
Software Mentions: 8
Published: over 6 years ago

10.18632/aging.203266

Clinical significance and prognostic role of an immune-related gene signature in gastric adenocarcinoma
Cited by: 4
Author(s): Rui Mao, Kehao Liu, Nana Zhao, Pengsen Guo, Yingxin Wu, Zheng Wang, Yanjun Liu, Tongtong Zhang
Software Mentions: 8
Published: almost 5 years ago

10.3389/fimmu.2020.00611

Human Regulatory T Cells From Umbilical Cord Blood Display Increased Repertoire Diversity and Lineage Stability Relative to Adult Peripheral Blood
Cited by: 19
Author(s): Keshav Motwani, Leeana D. Peters, Willem H Vliegen, Ahmed G Elsayed, Howard R. Seay, Maria-Cecilia Lopez, Henry V. Baker, Amanda L. Posgai, Todd M. Brusko, Daniel J. Perry, Rhonda Bacher, Joseph Larkin, Michael J. Haller
Software Mentions: 8
Published: about 6 years ago

10.3389/fpls.2020.00706

Climate Change Synchronizes Growth and iWUE Across Species in a Temperate-Submediterranean Mixed Oak Forest
Cited by: 6
Author(s): Isabel Dorado‐Liñán, María Valbuena‐Carabaña, Isabel Cañellas, Luís Gil, Guillermo Gea‐Izquierdo
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pcbi.1007358

Seven quick tips for analysis scripts in neuroimaging
Cited by: 11
Author(s): Marijn van Vliet
Software Mentions: 8
Published: over 6 years ago

10.3389/fpsyg.2017.02229

Work Engagement among Rescue Workers: Psychometric Properties of the Portuguese UWES
Cited by: 18
Author(s): Jorge Sinval, Alexandra Marqués Pinto, Cristina Queirós, João Marôco
Software Mentions: 8
Published: over 8 years ago

10.1098/rspb.2018.0519

Intercontinental karyotype–environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly
Cited by: 33
Author(s): Claire Mérot, Emma L. Berdan, Charles Babin, Éric Normandeau, Maren Wellenreuther, Louis Bernatchez
Software Mentions: 8
Published: about 8 years ago

10.1186/s12862-021-01890-x

Experimental increase of worker diversity benefits brood production in ants
Cited by: 3
Author(s): Marina N. Psalti, Dustin Gohlke, Romain Libbrecht
Software Mentions: 8
Published: almost 5 years ago

10.1186/s13029-015-0043-5

CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks
Cited by: 5
Author(s): Maciej Fronczuk, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 8
Published: over 10 years ago

10.1371/journal.pone.0191625

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
Cited by: 76
Author(s): Noelle Noyes, Kyu Chul Cho, Jacques Ravel, Larry J. Forney, Zaid Abdo
Software Mentions: 8
Published: over 8 years ago

10.1128/mSystems.00174-16

Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern China
Cited by: 89
Author(s): Bin Ma, Zhongmin Dai, Haizhen Wang, Melissa Dsouza, Xingmei Liu, Yan He, Jianjun Wu, Jorge L. Mazza Rodrigues, Jack A. Gilbert, Philip C. Brookes, Jianming Xu
Software Mentions: 8
Published: over 9 years ago

10.1038/s41396-019-0383-2

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
Cited by: 596
Author(s): Samiran Banerjee, Florian Walder, Lucie Büchi, Marion Meyer, Alain Held, Andreas Gattinger, Thomas Keller, Raphaël Charles, Marcel G. A. van der Heijden
Software Mentions: 8
Published: over 7 years ago

10.3390/biom10060878

High-Throughput Identification of Adapters in Single-Read Sequencing Data
Cited by: 3
Author(s): Asan M. S. H. Mohideen, Steinar Johansen, Igor Babiak
Software Mentions: 8
Published: about 6 years ago

10.3389/fmicb.2020.01376

Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?
Cited by: 28
Author(s): Ilya B. Slizovskiy, Kingshuk Mukherjee, Christopher Dean, Christina Boucher, Noelle Noyes
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.05005

Predicting effective microRNA target sites in mammalian mRNAs
Cited by: 5,158
Author(s): Vikram Agarwal, George W. Bell, Jin Wu Nam, David P. Bartel
Software Mentions: 8
Published: almost 11 years ago

10.3390/pathogens10010049

Immune Cell Production Is Targeted by Parasitoid Wasp Virulence in a Drosophila–Parasitoid Wasp Interaction
Cited by: 2
Author(s): Jordann E. Trainor, Pooja Kr, Nathan T. Mortimer
Software Mentions: 8
Published: over 5 years ago

10.3390/plants10081594

RNAi Suppression of LEAFY Gives Stable Floral Sterility, and Reduced Growth Rate and Leaf Size, in Field-Grown Poplars
Cited by: 5
Author(s): Amy L. Klocko, Amanda Goddard, Jeremy R. Jacobson, Anna Magnuson, S. H. Strauss
Software Mentions: 8
Published: almost 5 years ago

10.1002/dad2.12066

Semantic loss marks early Alzheimer's disease‐related neurodegeneration in older adults without dementia
Cited by: 20
Author(s): Jet M.J. Vonk, Vincent Bouteloup, Jean‐François Mangin, Bruno Dubois, ‪Frederic Blanc‬, Audrey Gabelle, Mathieu Ceccaldi, Cédric Annweiler, Pierre Krolak‐Salmon, Cathérine Belin, Thérèse Rivasseau‐Jonveaux, Adrien Julian, François Sellal, Éloi Magnin, Marie Chupin, Marie‐Odile Habert, Geneviève Chêne, Carole Dufouil
Software Mentions: 8
Published: over 6 years ago

10.3389/fninf.2021.659005

PyGeNN: A Python Library for GPU-Enhanced Neural Networks
Cited by: 23
Author(s): James C. Knight, A. B. Комиссаров, Thomas Nowotny
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pcbi.1008488

On the NF-Y regulome as in ENCODE (2019)
Cited by: 4
Author(s): Mirko Ronzio, Andrea Bernardini, Giulio Pavesi, Roberto Mantovani, Diletta Dolfini
Software Mentions: 8
Published: over 5 years ago

10.1098/rsos.181588

Correlated evolution of neck length and leg length in birds
Cited by: 27
Author(s): Christine Böhmer, Olivia Plateau, Raphaël Cornette, Anick Abourachid
Software Mentions: 8
Published: about 7 years ago

10.1038/tp.2016.275

A methylome-wide mQTL analysis reveals associations of methylation sites with GAD1 and HDAC3 SNPs and a general psychiatric risk score
Cited by: 28
Author(s): Diana‐Maria Ciuculete, Adrian Boström, Sarah Voisin, H. Philipps, Olga E. Titova, Marcus Bandstein, Lamia Nikontovic, Michael J. Williams, Jessica Mwinyi, Helgi B. Schiöth
Software Mentions: 8
Published: over 9 years ago

10.1371/journal.pone.0256210

Intolerance of uncertainty and decisions about delayed, probabilistic rewards: A replication and extension of Luhmann, C. C., Ishida, K., &amp; Hajcak, G. (2011)
Cited by: 1
Author(s): Luís F. Ciria, María J. Quintero, Francisco J. López, David Luque, Pedro L. Cobos, Joaquín Morís
Software Mentions: 8
Published: almost 5 years ago

10.3389/fgene.2021.602196

AI Aided Design of Epitope-Based Vaccine for the Induction of Cellular Immune Responses Against SARS-CoV-2
Cited by: 4
Author(s): Giovanni Mazzocco, Iga Niemiec, Alexander Myronov, Piotr Skoczylas, Jan Kaczmarczyk, Anna Sanecka-Duin, Katarzyna Gruba, Paulina Król, Michał Drwal, Marian Szczepanik, Krzysztof Pyrć, Piotr Stępniak
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2020.610269

Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon Sediments
Cited by: 15
Author(s): Ugo Marzocchi, Stefano Bonaglia, Anastasija Zaiko, Grazia Marina Quero, Irma Vybernaite‐Lubiene, Tobia Politi, Aurelija Samuilovienė, Mindaugas Žilius, Marco Bartoli, Ulisse Cardini
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0242142

'Tiny numbers' are actually tiny: Evidence from gestures in the TV News Archive
Cited by: 13
Author(s): Greg Woodin, Bodo Winter, Marcus Perlman, Jeannette Littlemore, Teenie Matlock
Software Mentions: 8
Published: over 5 years ago

10.3389/fphys.2021.662132

Liver Transcriptome Dynamics During Hibernation Are Shaped by a Shifting Balance Between Transcription and RNA Stability
Cited by: 10
Author(s): Austin E. Gillen, Rui Fu, Kent Riemondy, Jennifer Jager, Bin Fang, Mitchell A. Lazar, Sandra L. Martin
Software Mentions: 8
Published: about 5 years ago

10.3390/biology10010007

Effect of Weed Management on the Parasitoid Community in Mediterranean Vineyards
Cited by: 9
Author(s): Gabriella M Möller, Tamar Keasar, Idan Shapira, Daniella M Möller, Marco Ferrante, Michal Segoli
Software Mentions: 8
Published: over 5 years ago

10.1186/s12864-018-4766-y

BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues
Cited by: 32
Author(s): Luli S. Zou, Michael R. Erdos, D. Leland Taylor, Peter S. Chines, Arushi Varshney, Stephen C. J. Parker, Francis S. Collins, John P. Didion
Software Mentions: 8
Published: about 8 years ago

10.1371/journal.pone.0180435

White-nose syndrome pathology grading in Nearctic and Palearctic bats
Cited by: 38
Author(s): Jiří Pikula, Sybill K. Amelon, Hana Banďouchová, Tomáš Bartonička, Hana Berková, Jiří Brichta, Sarah E. Hooper, Tomasz Kokurewicz, Miroslav Kolařík, Bernd Köllner, Veronika Kováčová, Petr Linhart, Vladimír Piaček, Gregory G. Turner, Jan Zukal, Natália Martínková
Software Mentions: 8
Published: almost 9 years ago

10.1186/s40478-021-01240-4

Experimental colitis promotes sustained, sex-dependent, T-cell-associated neuroinflammation and parkinsonian neuropathology
Cited by: 26
Author(s): Madelyn C. Houser, W. Michael Caudle, Jianjun Chang, George T. Kannarkat, Yuan Yang, Sean D. Kelly, Danielle Oliver, Valerie Joers, Kathleen M. Shannon, Ali Keshavarzian, Malú G. Tansey
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.pbio.3001007

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
Cited by: 180
Author(s): Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas
Software Mentions: 8
Published: over 5 years ago

10.3389/fvets.2020.00523

Mind the Queue: A Case Study in Visualizing Heterogeneous Behavioral Patterns in Livestock Sensor Data Using Unsupervised Machine Learning Techniques
Cited by: 11
Author(s): Catherine McVey, Fushing Hsieh, Diego Manríquez, Pablo Pinedo, Kristina Horback
Software Mentions: 8
Published: almost 6 years ago

10.1093/gigascience/giz092

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Cited by: 112
Author(s): Alexander M. Piper, Jana Batovska, Noel O. I. Cogan, John Weiss, John Paul Cunningham, Brendan Rodoni, Mark J. Blacket
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0200925

PNPase knockout results in mtDNA loss and an altered metabolic gene expression program
Cited by: 12
Author(s): Eriko Shimada, Fasih M. Ahsan, Mahta Nili, Dian Huang, Sean Atamdede, Tara TeSlaa, Dana Case, Xiang Yu, Brian D. Gregory, Benjamin J. Perrin, Carla M. Koehler, Michael A. Teitell
Software Mentions: 8
Published: almost 8 years ago

10.1093/rheumatology/keab060

Do people with rheumatoid arthritis maintain their physical activity level at treatment onset over the first year of methotrexate therapy?
Cited by: 4
Author(s): James M Gwinnutt, Husain Alsafar, Kimme L Hyrich, Mark Lunt, Anne Barton, Suzanne Verstappen, Rams co-investigators
Software Mentions: 8
Published: over 5 years ago

10.3389/fcell.2021.681745

Comprehensive Analysis of the Immune Infiltrates and PD-L1 of m6A RNA Methylation Regulators in Hepatocellular Carcinoma
Cited by: 9
Author(s): Yali Xu, Xueling He, Junjian Deng, Lin Xiong, Yue Li, Xiaoyu Zhang, Wenliang Chen, Xin Liu, Ximing Xu
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-021-95068-6

CENPL, ISG20L2, LSM4, MRPL3 are four novel hub genes and may serve as diagnostic and prognostic markers in breast cancer
Cited by: 17
Author(s): Jun Yin, Chen Lin, Meng Jiang, Xuhai Tang, Danlin Xie, Jingwen Chen, Rongqin Ke
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-018-24758-5

Applications of Bayesian network models in predicting types of hematological malignancies
Cited by: 47
Author(s): Rupesh Agrahari, Amir Foroushani, T. Roderick Docking, Linda Chang, Gerben Duns, Monika Hudoba, Aly Karsan, Habil Zare
Software Mentions: 8
Published: about 8 years ago

10.3389/fonc.2021.625007

Comprehensive Analysis of the Functions and Prognostic Value of RNA-Binding Proteins in Thyroid Cancer
Cited by: 7
Author(s): Yue Ma, Shi Yin, Xiaofeng Liu, Jing Hu, Ning Cai, Xiao-bei Zhang, Fu Li, Xuchen Cao, Yue Yu
Software Mentions: 8
Published: over 5 years ago

10.1002/ece3.6941

A priori estimation of sequencing effort in complex microbial metatranscriptomes
Cited by: 2
Author(s): Toni Monleón-Getino, Jorge Frias-Lopez
Software Mentions: 8
Published: over 5 years ago

10.3390/ijms22105354

Genome-Wide Characterization of WRKY Transcription Factors Revealed Gene Duplication and Diversification in Populations of Wild to Domesticated Barley
Cited by: 7
Author(s): Jinhong Kan, Guang Gao, Qiang He, Qian Gao, Congcong Jiang, Sunny Ahmar, Jun Liu, Jing Zhang, Ping Yang
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-018-34921-7

Terminal restriction fragment length polymorphism is an “old school” reliable technique for swift microbial community screening in anaerobic digestion
Cited by: 37
Author(s): Jo De Vrieze, Umer Zeeshan Ijaz, Aaron Marc Saunders, Susanne Theuerl
Software Mentions: 8
Published: over 7 years ago

10.3390/microorganisms9091873

Nutrient Enrichment Predominantly Affects Low Diversity Microbiomes in a Marine Trophic Symbiosis between Algal Farming Fish and Corals
Cited by: 5
Author(s): Adriana Messyasz, Rebecca L. Maher, Sonora S. Meiling, Rebecca Vega Thurber
Software Mentions: 8
Published: almost 5 years ago

10.3390/plants10081536

Variation in Gene Expression between Two Sorghum bicolor Lines Differing in Innate Immunity Response
Cited by: 2
Author(s): Yaya Cui, Dongqin Chen, Yuyong Jiang, Dong Xu, Peter Balint‐Kurti, Gary Stacey
Software Mentions: 8
Published: almost 5 years ago

10.1186/s40169-020-0259-0

Whole‐transcriptome sequencing uncovers core regulatory modules and gene signatures of human fetal growth restriction
Cited by: 13
Author(s): Xing Wang, Jun Yu, Yiwei Yang, Xiaoqin Liu, Xiaobo Zhao, Xudong Guo, Tao Duan, Chenqi Lu
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-017-09154-9

Analysis of spatial genetic variation reveals genetic divergence among populations of Primula veris associated to contrasting habitats
Cited by: 3
Author(s): Pablo Deschepper, Rein Brys, Miguel A. Fortuna, Hans Jacquemyn
Software Mentions: 8
Published: almost 9 years ago

10.1007/s00259-020-04864-1

A CT-based radiomics model to detect prostate cancer lymph node metastases in PSMA radioguided surgery patients
Cited by: 25
Author(s): Jan C. Peeken, Mohamed A. Shouman, Markus Kroenke, Isabel Rauscher, Tobias Maurer, Jürgen E. Gschwend, Matthias Eiber, Stephanie E. Combs
Software Mentions: 8
Published: about 6 years ago

10.1186/s41065-021-00201-0

Identification and validation of hub genes of synovial tissue for patients with osteoarthritis and rheumatoid arthritis
Cited by: 10
Author(s): Yanzhi Ge, Zuxiang Chen, Yanbin Fu, Xue Xiao, Haipeng Xu, Peijian Tong, Li Zhou
Software Mentions: 8
Published: over 4 years ago

10.1016/j.cell.2017.04.013

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension
Cited by: 607
Author(s): Judith H.I. Haarhuis, Robin H. van der Weide, Vincent A. Blomen, J. Omar Yáñez-Cuna, Mario Amendola, Marjon S. van Ruiten, Peter H.L. Krijger, Hans Teunissen, René H. Medema, Bas van Steensel, Thijn R. Brummelkamp, Elzo de Wit, Benjamin D. Rowland
Software Mentions: 8
Published: about 9 years ago

10.1093/dnares/dsaa017

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
Cited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0127163

Genetic Deletion of the Transcriptional Repressor NFIL3 Enhances Axon Growth In Vitro but Not Axonal Repair In Vivo
Cited by: 2
Author(s): L.R. van der Kallen, Ruben Eggers, Erich Ehlert, Joost Verhaagen, August B. Smit, Ronald E. van Kesteren
Software Mentions: 8
Published: about 11 years ago

10.3389/fgene.2021.647353

Identification of Hub Genes and Their Correlation With Immune Infiltration Cells in Hepatocellular Carcinoma Based on GEO and TCGA Databases
Cited by: 22
Author(s): Rui Huang, Jinying Liu, Hui Li, Lierui Zheng, Haojun Jin, Yaqing Zhang, Wei Ma, Junhong Su, Min Wang, Kun Yang
Software Mentions: 8
Published: about 5 years ago

10.1186/1471-2105-9-559

WGCNA: an R package for weighted correlation network analysis
Cited by: 14,193
Author(s): Peter Langfelder, Steve Horvath
Software Mentions: 8
Published: over 17 years ago

10.3389/fonc.2020.01716

A Prognostic Prediction Model Developed Based on Four CpG Sites and Weighted Correlation Network Analysis Identified DNAJB1 as a Novel Biomarker for Pancreatic Cancer
Cited by: 13
Author(s): Lingming Kong, Peng Liu, Xiang Fei, Tianyu Wu, Zhongpeng Wang, Baohui Zhang, Jiatong Li, Xiaodong Tan
Software Mentions: 8
Published: almost 6 years ago

10.1186/s40168-019-0626-5

Choice of assembly software has a critical impact on virome characterisation
Cited by: 94
Author(s): Thomas D.S. Sutton, Adam G. Clooney, Feargal J. Ryan, R. Paul Ross, Colin Hill
Software Mentions: 8
Published: over 7 years ago

10.7717/peerj.4925

Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data
Cited by: 166
Author(s): Jonathan M. Palmer, Michelle A. Jusino, Mark T. Banik, Daniel L. Lindner
Software Mentions: 8
Published: about 8 years ago

10.3758/s13420-016-0255-9

Effects of forced movements on learning: Findings from a choice reaction time task in rats
Cited by: 3
Author(s): Hidekazu Kaneko, Hiroto Sano, Yasuhisa Hasegawa, Hiroshi Tamura, Shinya Suzuki
Software Mentions: 8
Published: over 9 years ago

10.1128/mSphere.00176-18

High Rate of Infection by Only Oncogenic Human Papillomavirus in Amerindians
Cited by: 10
Author(s): Daniela Vargas-Robles, Magda Magris, Natalia Morales, Maurits N.C. de Koning, Iveth Rodríguez, Tahidid Nieves, Filipa Godoy-Vitorino, Gloria Inés Sánchez, Luis David Alcaraz, Larry J. Forney, María-Eglée Pérez, Luis García-Briceño, Leen–Jan van Doorn, Maria Gloria Domínguez-Bello
Software Mentions: 8
Published: about 8 years ago

10.1093/cercor/bhaa348

The Functional Foundations of Episodic Memory Remain Stable Throughout the Lifespan
Cited by: 3
Author(s): Didac Vidal‐Piñeiro, Markus Handal Sneve, Inge K. Amlien, Håkon Grydeland, Athanasia M. Mowinckel, James M Roe, Øystein Sørensen, Lars Nyberg, Kristine B. Walhovd, Anders M. Fjell
Software Mentions: 8
Published: over 5 years ago

10.3390/e23020160

Influence Cascades: Entropy-Based Characterization of Behavioral Influence Patterns in Social Media
Cited by: 5
Author(s): Chathurani Senevirathna, Chathika Gunaratne, William Rand, Chathura Jayalath, Iván Garibay
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0062127

Home Range Utilisation and Long-Range Movement of Estuarine Crocodiles during the Breeding and Nesting Season
Cited by: 59
Author(s): Hamish A. Campbell, Ross G. Dwyer, Terri R. Irwin, Craig E. Franklin
Software Mentions: 8
Published: about 13 years ago

10.18632/aging.103707

A 12-immune cell signature to predict relapse and guide chemotherapy for stage II colorectal cancer
Cited by: 4
Author(s): Xianglong Tian, Xiaoqiang Zhu, Meng Wu, Shiguang Bai, Min Shi, Shihao Xiang, Zhao Chun-hua, Yugang Wang
Software Mentions: 8
Published: almost 6 years ago

10.7554/eLife.62208

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen
Cited by: 30
Author(s): David E. Cook, Holger Kramer, David E Torres, Michael Seidl, Bart P.H.J. Thomma
Software Mentions: 8
Published: over 5 years ago

10.1186/s12885-021-08012-2

Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma
Cited by: 5
Author(s): Haitao Chen, Yueying Li, Shu–Yuan Xiao, Jingyi Guo
Software Mentions: 8
Published: over 5 years ago

10.3389/fonc.2021.633995

A Nomogram for Predicting Multiple Metastases in Metastatic Colorectal Cancer Patients: A Large Population-Based Study
Cited by: 7
Author(s): Yuhang Ge, Renshen Xiang, Jun Ren, Wei Song, Wei Lu, Tao Fu
Software Mentions: 8
Published: about 5 years ago

10.1186/s40478-017-0421-0

Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice
Cited by: 5
Author(s): Anita Lakatos, Natalie R.S. Goldberg, Mathew Blurton‐Jones
Software Mentions: 8
Published: over 9 years ago

10.3390/ijms22179211

Extracellular Vesicle Separation Techniques Impact Results from Human Blood Samples: Considerations for Diagnostic Applications
Cited by: 12
Author(s): Theophilos Tzaridis, Daniel Bachurski, Shu Liu, Kristin Surmann, Felix Babatz, Manuela Gesell Salazar, Uwe Völker, Michael Hallek, Ulrich Herrlinger, Ina Vorberg, Christoph Coch, Katrin S. Reiners, Gunther Hartmann
Software Mentions: 8
Published: almost 5 years ago

10.3389/fninf.2014.00063

A flexible, interactive software tool for fitting the parameters of neuronal models
Cited by: 25
Author(s): Péter Friedrich, M.C. Vella, Attila I. Gulyás, Tamás F. Freund, Szabolcs Káli
Software Mentions: 8
Published: almost 12 years ago

10.1523/ENEURO.0426-17.2018

Circadian and Brain State Modulation of Network Hyperexcitability in Alzheimer’s Disease
Cited by: 31
Author(s): Rosalind Brown, Alice Lam, Alfredo Gonzalez-Sulser, Andrew Ying, Mary Jones, Robert Chang-Chih Chou, Makis Tzioras, Crispin Y. Jordan, Izabela Jedrasiak‐Cape, Anne-Laure Hemonnot-Girard, Maurice Abou Jaoude, Andrew J. Cole, Sydney S. Cash, Takashi Saito, Takaomi C. Saido, Richard R. Ribchester, K. Hashemi, Iris Oren
Software Mentions: 8
Published: over 8 years ago

10.1523/ENEURO.0339-19.2020

Function, Innervation, and Neurotransmitter Signaling in Mice Lacking Type-II Taste Cells
Cited by: 16
Author(s): Eric D. Larson, Aurélie Vandenbeuch, Catherine B. Anderson, Sue C. Kinnamon
Software Mentions: 8
Published: over 6 years ago

10.3389/fpsyg.2019.02597

Native Language Influence on Brass Instrument Performance: An Application of Generalized Additive Mixed Models (GAMMs) to Midsagittal Ultrasound Images of the Tongue
Cited by: 9
Author(s): Matthias Heyne, Donald Derrick, Jalal Al-Tamimi
Software Mentions: 8
Published: over 6 years ago