Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1188-0

https://doi.org/10.1186/s13059-017-1188-0

CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

Cited by: 391
Author(s): Peijie Lin, Michael Troup, Joshua W. K. Ho
Published: over 7 years ago

Software Mentions 8

bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: scde
Single Cell Differential Expression
Papers that mentioned: 13
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
pypi: cyclone
Non-blocking web server for Python. Tornado API as a Twisted protocol.
Papers that mentioned: 3
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
pypi: scLVM
scLVM
Papers that mentioned: 19