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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.15252/embj.2020106423

https://doi.org/10.15252/embj.2020106423

Activation of endogenous retroviruses during brain development causes an inflammatory response

Cited by: 27
Author(s): Marie E. Jönsson, Raquel Garza, Yogita Sharma, Rebecca Petri, Erik Södersten, Jenny Johansson, Peter Johansson, Diahann A. M. Atacho, Karolina Pircs, Sofia Madsen, David Yudovich, Ramprasad Ramakrishnan, Johan Holmberg, Jonas Larsson, Patric Jern, Johan Jakobsson
Published: over 4 years ago

Software Mentions 8

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
Very Likely Science (95)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: profiling
An interactive continuous Python profiler.
Papers that mentioned: 7
Very Likely Science (65)
pypi: subset
A cli-based word game
Papers that mentioned: 2
Likely Science (40)
pypi: TEtranscripts
Tools for estimating differential enrichment of Transposable Elements and other highly repetitive regions
Papers that mentioned: 14
Very Likely Science (90)