Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/2041-210X.13422

https://doi.org/10.1111/2041-210X.13422

nosoi: A stochastic agent‐based transmission chain simulation framework in <scp>r</scp>

Cited by: 19
Author(s): Sébastian Lequime, Paul Bastide, Simon Dellicour, Philippe Lemey, Guy Baele
Published: over 4 years ago

Software Mentions 8

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
Papers that mentioned: 32
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: nosoi
A Forward Agent-Based Transmission Chain Simulator
Papers that mentioned: 3
cran: outbreaker2
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data
Papers that mentioned: 7
cran: tidytree
A Tidy Tool for Phylogenetic Tree Data Manipulation
Papers that mentioned: 10
pypi: tidytree
manager directories
Papers that mentioned: 10
pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32