cran: rpart | Projects | Ecosyste.ms: Papers

10.12688/f1000research.17824.2

Enhancing gene set enrichment using networks
Cited by: 2
Author(s): Michael Prummer
Software Mentions: 51
Published: over 5 years ago

10.3389/fcell.2020.577125

Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to Immunotherapy
Cited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: almost 4 years ago

10.1371/journal.pcbi.1007792

eXplainable Artificial Intelligence (XAI) for the identification of biologically relevant gene expression patterns in longitudinal human studies, insights from obesity research
Cited by: 38
Author(s): Augusto Anguita‐Ruiz, Alberto Segura‐Delgado, Rafael Alcalá, Concepción M. Aguilera, Jesús Alcalá‐Fdez
Software Mentions: 23
Published: over 4 years ago

10.1186/s12864-017-4353-7

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism
Cited by: 72
Author(s): Ali Sharifi-Zarchi, Daniela Gerovska, Kenjiro Adachi, Mehdi Totonchi, Hamid Pezeshk, Ryan J. Taft, Hans R. Schöler, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand, Marcos J. Araúzo-Bravo
Software Mentions: 21
Published: almost 7 years ago

10.1186/1472-6947-13-126

Evaluation of prediction models for the staging of prostate cancer
Cited by: 19
Author(s): Susie Boyce, Yue Fan, R. William G. Watson, Brendan Murphy
Software Mentions: 16
Published: about 11 years ago

10.3389/fimmu.2017.00445

Integration of Immune Cell Populations, mRNA-Seq, and CpG Methylation to Better Predict Humoral Immunity to Influenza Vaccination: Dependence of mRNA-Seq/CpG Methylation on Immune Cell Populations
Cited by: 15
Author(s): Michael T. Zimmermann, Richard B. Kennedy, Diane E. Grill, Ann L. Oberg, Krista M. Goergen, Inna G. Ovsyannikova, Iana H. Haralambieva, Gregory A. Poland
Software Mentions: 16
Published: over 7 years ago

10.3389/frai.2021.628441

Interpretability Versus Accuracy: A Comparison of Machine Learning Models Built Using Different Algorithms, Performance Measures, and Features to Predict E. coli Levels in Agricultural Water
Cited by: 12
Author(s): Daniel Weller, Tanzy Love, Martin Wiedmann
Software Mentions: 16
Published: over 3 years ago

10.21105/joss.03073

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines
Cited by: 22
Author(s): Begüm D. Topçuoğlu, Zena Lapp, Kelly L Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss
Software Mentions: 15
Published: over 3 years ago

10.1186/s13023-020-01520-7

Identification of risk features for complication in Gaucher’s disease patients: a machine learning analysis of the Spanish registry of Gaucher disease
Cited by: 11
Author(s): Marcio Andrade‐Campos, Laura López de Frutos, Jorge J. Cebolla, Irene Serrano-Gonzalo, Blanca Medrano-Engay, Mercedes Roca-Espiau, Beatriz Gomez-Barrera, Jorge Pérez-Heredia, D. Íñiguez, Pilar Giraldo
Software Mentions: 13
Published: about 4 years ago

10.3389/fonc.2021.639013

Single-Cell Transcriptome Analysis Identifies Ligand–Receptor Pairs Associated With BCP-ALL Prognosis
Cited by: 3
Author(s): Liang Wu, Mingming Jiang, Ping Yu, Jianfeng Li, Wen Ouyang, Chong Feng, Wei Zhao, Yuting Dai, Jinyan Huang
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0135784

Comparison of Nine Statistical Model Based Warfarin Pharmacogenetic Dosing Algorithms Using the Racially Diverse International Warfarin Pharmacogenetic Consortium Cohort Database
Cited by: 38
Author(s): Rong Liu, Xi Li, Wei Zhang, Hong‐Hao Zhou
Software Mentions: 13
Published: about 9 years ago

10.1038/s41598-021-85155-z

Validating machine learning approaches for prediction of donor related complication in microsurgical breast reconstruction: a retrospective cohort study
Cited by: 6
Author(s): Yujin Myung, Sungmi Jeon, Chan Yeong Heo, Eun‐Kyu Kim, Eunyoung Kang, Hee-Chul Shin, Eun Joo Yang, Jae Hoon Jeong
Software Mentions: 12
Published: over 3 years ago

10.1186/s12937-021-00692-7

A review of statistical methods for dietary pattern analysis
Cited by: 103
Author(s): Junkang Zhao, Zhiyao Li, Qian Gao, Haifeng Zhao, Shuting Chen, Ling-Qiao Huang, Yiyun Wang, Tong Wang
Software Mentions: 12
Published: over 3 years ago

10.1186/s12885-021-08442-y

Genetic expression and mutational profile analysis in different pathologic stages of hepatocellular carcinoma patients
Cited by: 9
Author(s): Xingjie Gao, Chunyan Zhao, Nan Zhang, Xiaoteng Cui, Yuanyuan Ren, Chao Su, Shaoyuan Wu, Zhi Yao, Jie Yang
Software Mentions: 12
Published: over 3 years ago

10.7554/eLife.55529

Smchd1 is a maternal effect gene required for genomic imprinting
Cited by: 22
Author(s): Iromi Wanigasuriya, Quentin Gouil, Sarah Kinkel, Andrés Tapia del Fierro, Tamara Beck, Ellise A Roper, Kelsey Breslin, Jessica M Stringer, Karla J. Hutt, Heather Lee, Andrew Keniry, Matthew E. Ritchie, Marnie E. Blewitt
Software Mentions: 12
Published: about 4 years ago

10.3390/jcm7100322

Derivation and Validation of Machine Learning Approaches to Predict Acute Kidney Injury after Cardiac Surgery
Cited by: 100
Author(s): Hyung Chul Lee, Hyun Kyu Yoon, Karam Nam, Youn Joung Cho, Tae Kyoung Kim, Won Ho Kim, Jae Hyon Bahk
Software Mentions: 12
Published: about 6 years ago

10.3389/fsufs.2020.561517

Predictive Models May Complement or Provide an Alternative to Existing Strategies for Assessing the Enteric Pathogen Contamination Status of Northeastern Streams Used to Provide Water for Produce Production
Cited by: 19
Author(s): Daniel Weller, Tanzy Love, Alexandra Belias, Martin Wiedmann
Software Mentions: 12
Published: about 4 years ago

10.1371/journal.pone.0231500

Propensity score adjustment using machine learning classification algorithms to control selection bias in online surveys
Cited by: 23
Author(s): Ramón Ferri‐García, María del Mar Rueda
Software Mentions: 12
Published: over 4 years ago

10.1186/s12967-017-1285-6

In silico prediction of novel therapeutic targets using gene–disease association data
Cited by: 79
Author(s): Enrico Ferrero, Ian Dunham, Philippe Sanséau
Software Mentions: 12
Published: about 7 years ago

10.1038/srep42192

Application of Machine-Learning Models to Predict Tacrolimus Stable Dose in Renal Transplant Recipients
Cited by: 86
Author(s): Jie Tang, Rong Liu, Yueli Zhang, Mou-Ze Liu, HU Yong-fang, Minghai Shao, Lan Zhu, Hua‐Wen Xin, Feng Gao, Wenjun Shang, Xiang‐Gao Meng, Lirong Zhang, Yingzi Ming, Wei Zhang
Software Mentions: 11
Published: almost 8 years ago

10.3389/fphys.2021.714195

Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine Learning
Cited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: about 3 years ago

10.1371/journal.pone.0207126

Prognostic function to estimate the probability of meaningful clinical improvement after surgery - Results of a prospective multicenter observational cohort study on patients with lumbar spinal stenosis
Cited by: 20
Author(s): Ulrike Held, Jakob M Burgstaller, Maria M. Wertli, Giuseppe Pichierri, Sebastian Winklhofer, Florian Brunner, François Porchet, Mazda Farshad, Johann Steurer
Software Mentions: 11
Published: about 6 years ago

10.3390/jcm8091298

Comparison of Machine Learning Techniques for Prediction of Hospitalization in Heart Failure Patients
Cited by: 32
Author(s): Giulia Lorenzoni, Stefano Santo Sabato, Corrado Lanera, Daniele Bottigliengo, Clara Minto, Honoria Ocagli, Paola De Paolis, Darío Gregori, Sabino Iliceto, Franco Pisanò
Software Mentions: 10
Published: about 5 years ago

10.2196/26412

Recursive partitioning vs computerized adaptive testing to reduce the burden of health assessment in cleft lip and/or palate: a comparative simulation study (Preprint)
Cited by: 1
Author(s): Conrad Harrison, Chris Sidey‐Gibbons, Anne F. Klassen, Karen W. Y. Wong Riff, Dominic Furniss, Marc C. Swan, Jeremy Rodrigues
Software Mentions: 10
Published: almost 4 years ago

10.1038/s41598-020-60747-3

High-Throughput Screening to Predict Chemical-Assay Interference
Cited by: 25
Author(s): Alexandre Borrel, Ruili Huang, Srilatha Sakamuru, Menghang Xia, Anton Simeonov, Kamel Mansouri, Keith A. Houck, Richard S. Judson, Nicole Kleinstreuer
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pone.0127816

HIV-1 Coreceptor Usage Assessment by Ultra-Deep Pyrosequencing and Response to Maraviroc
Cited by: 3
Author(s): Christophe Rodriguez, Cathia Soulié, Anne–Geneviève Marcelin, Vincent Cálvez, Diane Descamps, Charlotte Charpentier, Philippe Flandre, Patrícia Recordon-Pinson, Pantxika Bellecave, Jean‐Michel Pawlotsky, Bernard Masquelier
Software Mentions: 10
Published: over 9 years ago

10.1002/cam4.4071

Integrative analysis of immune molecular subtypes and microenvironment characteristics of bladder cancer
Cited by: 5
Author(s): Jinlong Cao, Jianpeng Li, Xin Yang, Pan Li, Zhiqiang Yao, Dali Han, Lijun Ying, Lijie Wang, Junqiang Tian
Software Mentions: 10
Published: over 3 years ago

10.3390/insects10030065

Multi-Scenario Species Distribution Modeling
Cited by: 12
Author(s): Senait D. Senay, Susan P. Worner
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pone.0238160

Diagnostic and prognostic value of hematological and immunological markers in COVID-19 infection: A meta-analysis of 6320 patients
Cited by: 138
Author(s): Rami M. Elshazli, Eman A. Toraih, Abdelaziz Elgaml, Mohammed El‐Mowafy, Mohamed El-Mesery, Mohamed N. Amin, Mohammad Hussein, Mary Killackey, Manal S. Fawzy, Emad Kandil
Software Mentions: 10
Published: over 4 years ago

10.3390/jcm10194354

Application of an Exploratory Knowledge-Discovery Pipeline Based on Machine Learning to Multi-Scale OMICS Data to Characterise Myocardial Injury in a Cohort of Patients with Septic Shock: An Observational Study
Cited by: 3
Author(s): Bernardo Bollen Pinto, Vicent Ribas Ripoll, Paula Subías-Beltrán, Antoine Herpain, Cristina Barlassina, Eliandre de Oliveira, Roberta Pastorelli, Daniele Braga, Matteo Barcella, Laia Subirats, Julia Bauzá‐Martinez, Antonia Odena, Manuela Ferrario, Giuseppe Baselli, Federico Aletti, Karim Bendjelid
Software Mentions: 9
Published: about 3 years ago

10.1186/1471-2288-14-91

Comparing classification methods for diffuse reflectance spectra to improve tissue specific laser surgery
Cited by: 8
Author(s): Alexander Engelhardt, Rajesh Kanawade, Christian Knipfer, Matthias Schmid, Florian Stelzle, Werner Adler
Software Mentions: 9
Published: over 10 years ago

10.3390/e21050513

Mimicking Anti-Viruses with Machine Learning and Entropy Profiles
Cited by: 10
Author(s): Héctor D. Menéndez, José Luís Llorente
Software Mentions: 9
Published: over 5 years ago

10.1186/s13104-016-1945-2

Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative study
Cited by: 9
Author(s): Tjeerd van der Ploeg, Ewout W. Steyerberg
Software Mentions: 9
Published: over 8 years ago

10.5811/westjem.2016.5.29957

Emergency Department Length of Stay for Maori and European Patients in New Zealand
Cited by: 6
Author(s): D Prisk, Godfrey Aj, Amy E. Lawrence
Software Mentions: 9
Published: over 8 years ago

10.7554/eLife.40757

Targets and genomic constraints of ectopic Dnmt3b expression
Cited by: 24
Author(s): Yingying Zhang, Jocelyn Charlton, Rahul Karnik, Isabel Beerman, Zachary D. Smith, Hongcang Gu, Patrick Boyle, Xiaoli Mi, Kendell Clement, Ramona Pop, Andreas Gnirke, Derrick J. Rossi, Alexander Meissner
Software Mentions: 9
Published: almost 6 years ago

10.3390/ijms22031399

DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
Cited by: 5
Author(s): Salim Ghannoum, Waldir Leoncio Netto, Damiano Fantini, Benjamin Ragan-Kelley, Amirabbas Parizadeh, Emma Jonasson, Anders Ståhlberg, Hesso Farhan, Alvaro Köhn‐Luque
Software Mentions: 9
Published: almost 4 years ago

10.3390/e23050601

Information Structures for Causally Explainable Decisions
Cited by: 3
Author(s): Louis Anthony Cox
Software Mentions: 9
Published: over 3 years ago

10.3390/toxins12060414

Metabolic Traits of Bovine Shiga Toxin-Producing Escherichia coli (STEC) Strains with Different Colonization Properties
Cited by: 4
Author(s): Stefanie A. Barth, M. Weber, Katharina Schaufler, Christian Berens, Lutz Geue, Christian Menge
Software Mentions: 9
Published: over 4 years ago

10.1186/s12911-019-0774-3

Using decision fusion methods to improve outbreak detection in disease surveillance
Cited by: 7
Author(s): Gaëtan Texier, Rodrigue S. Allodji, Loty Diop, Jean‐Baptiste Meynard, Liliane Pellegrin, Hervé Chaudet
Software Mentions: 9
Published: over 5 years ago

10.3389/fneur.2020.01021

Medical Informatics Platform (MIP): A Pilot Study Across Clinical Italian Cohorts
Cited by: 10
Author(s): Alberto Redolfi, Silvia De Francesco, Fulvia Palesi, Samantha Galluzzi, Cristina Muscio, Gloria Castellazzi, Pietro Tiraboschi, Giovanni Savini, Anna Nigri, Gabriella Bottini, Maria Grazia Bruzzone, Matteo Cotta Ramusino, Stefania Ferraro, C Wheeler-Kingshott, Fabrizio Tagliavini, Giovanni B. Frisoni, Philippe Ryvlin, Jean-François Demonet, Ferath Kherif, Stefano F. Cappa, Egidio D’Angelo
Software Mentions: 9
Published: about 4 years ago

10.1186/s12884-018-1971-2

Comparison of logistic regression with machine learning methods for the prediction of fetal growth abnormalities: a retrospective cohort study
Cited by: 70
Author(s): Stefan Kuhle, Bryan Maguire, Hongqun Zhang, David C. Hamilton, Alexander C. Allen, K.S. Joseph, Victoria M. Allen
Software Mentions: 8
Published: over 6 years ago

10.1186/s40462-021-00245-x

An evaluation of machine learning classifiers for next-generation, continuous-ethogram smart trackers
Cited by: 15
Author(s): Hui Yu, Jian Deng, Ran Nathan, Max Kröschel, Sasha Pekarsky, Guozheng Li, Marcel Klaassen
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-020-70596-9

Identification of potential diagnostic gene biomarkers in patients with osteoarthritis
Cited by: 13
Author(s): Xinling Wang, Yu Yang, Yong Huang, Zhu Ming-shuang, Rigao Chen, Zhanghui Liao, Shipeng Yang
Software Mentions: 8
Published: over 4 years ago

10.1186/s12911-019-0801-4

Predicting factors for survival of breast cancer patients using machine learning techniques
Cited by: 143
Author(s): Mogana Darshini Ganggayah, Nur Aishah Mohd Taib, Yip Cheng Har, Píetro Lió, Sarinder Kaur Dhillon
Software Mentions: 8
Published: over 5 years ago

10.3390/jcm10010111

Evaluating the Effect of Topical Atropine Use for Myopia Control on Intraocular Pressure by Using Machine Learning
Cited by: 19
Author(s): Tzu-En Wu, Hsin‐An Chen, Mao-Jhen Jhou, Yen-Ning Chen, Ting-Jen Chang, Chi-Jie Lu
Software Mentions: 8
Published: almost 4 years ago

10.12688/wellcomeopenres.14847.1

Using machine learning to guide targeted and locally-tailored empiric antibiotic prescribing in a children's hospital in Cambodia
Cited by: 45
Author(s): Mathupanee Oonsivilai, Yin Mo, Nantasit Luangasanatip, Yoel Lubell, Thyl Miliya, Pisey Tan, Lorn Loeuk, Paul Turner, Ben S. Cooper
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pone.0196865

Predicting potential drug-drug interactions on topological and semantic similarity features using statistical learning
Cited by: 89
Author(s): Andrej Kastrin, Polonca Ferk, Brane Leskošek
Software Mentions: 8
Published: over 6 years ago

10.3390/nu11122892

Dietary Determinants of Metabolic Syndrome Parameters Differ by Gender in College Students
Cited by: 4
Author(s): Sara Saltzgiver, Alexander Nielson, Heidi Costello, Adam Baker, Julian Chan, David Aguilar
Software Mentions: 8
Published: almost 5 years ago

10.1016/j.ebiom.2021.103444

A diagnostic miRNA signature for pulmonary arterial hypertension using a consensus machine learning approach
Cited by: 24
Author(s): Niamh Errington, James Iremonger, Josephine Pickworth, Sokratis Kariotis, Christopher J. Rhodes, Alexander Rothman, Robin Condliffe, Charles Elliot, David G. Kiely, Luke Howard, John Wharton, A. A. Roger Thompson, Nicholas W. Morrell, Martin R. Wilkins, Dennis Wang, Allan Lawrie
Software Mentions: 8
Published: over 3 years ago

10.3390/cancers12102802

Comparison of the Tree-Based Machine Learning Algorithms to Cox Regression in Predicting the Survival of Oral and Pharyngeal Cancers: Analyses Based on SEER Database
Cited by: 31
Author(s): Mi Du, Dandara Haag, John Lynch, Murthy Mittinty
Software Mentions: 8
Published: about 4 years ago

10.3389/fonc.2020.00071

Machine Learning Decision Tree Models for Differentiation of Posterior Fossa Tumors Using Diffusion Histogram Analysis and Structural MRI Findings
Cited by: 24
Author(s): Seyedmehdi Payabvash, Mariam Aboian, Tarık Tıhan, Soonmee Cha
Software Mentions: 8
Published: almost 5 years ago

10.1098/rstb.2020.0362

Land-use change and rodent-borne diseases: hazards on the shared socioeconomic pathways
Cited by: 13
Author(s): Gabriel E. García‐Peña, André V. Rubio, Hugo Mendoza, Miguel Fernández, Matthew T. Milholland, A. Alonso Aguirre, Gerardo Suzán, Carlos Zambrana‐Torrelio
Software Mentions: 8
Published: about 3 years ago

10.3389/fmicb.2017.02512

Worldwide Phylogenetic Group Patterns of Escherichia coli from Commensal Human and Wastewater Treatment Plant Isolates
Cited by: 69
Author(s): Nancy de Castro Stoppe, Juliana Saragiotto Silva, Camila Carlos, Maria Inês Z. Sato, Antônio Mauro Saraiva, Laura Maria Mariscal Ottoboni, Tatiana Teixeira Torres
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0102457

The “Bear” Essentials: Actualistic Research on Ursus arctos arctos in the Spanish Pyrenees and Its Implications for Paleontology and Archaeology
Cited by: 62
Author(s): Maite Arilla, Jordi Rosell, Ruth Blasco, Manuel Domínguez‐Rodrigo, Travis Rayne Pickering
Software Mentions: 7
Published: over 10 years ago

10.2196/16153

Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey
Cited by: 8
Author(s): Sang Min Nam, Thomas A Peterson, Atul J. Butte, Kyoung Yul Seo, Hyun Wook Han
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmed.2021.670694

Investigation of Coagulation Biomarkers to Assess Clinical Deterioration in SARS-CoV-2 Infection
Cited by: 15
Author(s): Paul Billoir, Kévin Alexandre, Thomas Duflot, Maxime Roger, S. Miranda, Odile Goria, Luc Marie Joly, Mathieu Demeyere, Guillaume Feugray, Valéry Brunel, Manuel Etienne, Véronique Le Cam Duchez
Software Mentions: 7
Published: over 3 years ago

10.3389/fmed.2021.635771

Application of Machine Learning Algorithms to Predict Central Lymph Node Metastasis in T1-T2, Non-invasive, and Clinically Node Negative Papillary Thyroid Carcinoma
Cited by: 35
Author(s): Jiang Zhu, Jinxin Zheng, Longfei Li, Rui Huang, Haoyu Ren, Denghui Wang, Zhijun Dai, Xinliang Su
Software Mentions: 7
Published: over 3 years ago

10.1186/s12859-021-04049-z

R.ROSETTA: an interpretable machine learning framework
Cited by: 15
Author(s): Mateusz Garbulowski, Klev Diamanti, Karolina Smolińska, Nicholas Baltzer, Patricia Stoll, Susanne Bornelöv, Aleksander Øhrn, Lars Feuk, Jan Komorowski
Software Mentions: 7
Published: over 3 years ago

10.1186/s12909-019-1710-z

Item pre-knowledge true prevalence in clinical anatomy - application of gated item response theory model
Cited by: 1
Author(s): Mílton Severo, Fernanda Silva-Pereira, Maria Amélia Ferreira, Magda Monteiro, Isabel Pereira
Software Mentions: 7
Published: over 5 years ago

10.1186/1476-069X-12-85

Statistical strategies for constructing health risk models with multiple pollutants and their interactions: possible choices and comparisons
Cited by: 112
Author(s): Zhichao Sun, Yuansheng Tao, Shi Li, Kelly K. Ferguson, John D. Meeker, Sung Kyun Park, Stuart Batterman, Bhramar Mukherjee
Software Mentions: 7
Published: about 11 years ago

10.3390/electronics9010099

Weighted Random Forests to Improve Arrhythmia Classification
Cited by: 21
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski, Chandrajit L. Bajaj
Software Mentions: 7
Published: almost 5 years ago

10.1002/mp.12967

Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers
Cited by: 188
Author(s): Timo M. Deist, Frank J. W. M. Dankers, Gilmer Valdés, Robin Wijsman, I‐Chow Hsu, Cary Oberije, Tim Lustberg, Johan van Soest, Frank Hoebers, Arthur Jochems, Issam El Naqa, Leonard Wee, Olivier Morin, David R. Raleigh, Wouter Bots, Johannes H.A.M. Kaanders, J. Belderbos, Margriet Kwint, Timothy D. Solberg, R. Monshouwer, Johan Bussink, André Dekker, Philippe Lambin
Software Mentions: 7
Published: over 6 years ago

10.3390/cells10092430

Artificial Intelligence-Assisted Identification of Genetic Factors Predisposing High-Risk Individuals to Asymptomatic Heart Failure
Cited by: 7
Author(s): Ning Yang, Chi-Hsiao Yeh, Tsung Hsien Tsai, Yi Ju Chou, Paul Wei Che Hsu, Chun-Hsien Li, Yun Hsuan Chan, Ling Kuo, Chun Tai Mao, Yu-Chiau Shyu, Ming‐Jui Hung, Chao‐Lun Lai, Huey Kang Sytwu, Ting Fen Tsai
Software Mentions: 7
Published: about 3 years ago

10.1186/s12967-021-02720-w

Development and validation of a prognostic COVID-19 severity assessment (COSA) score and machine learning models for patient triage at a tertiary hospital
Cited by: 38
Author(s): Verena Schöning, Evangelia Liakoni, Christine Baumgartner, Aristomenis K. Exadaktylos, Wolf E. Hautz, Andrew Atkinson, Felix Hammann
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0224079

Typological analysis of public-private partnerships in the veterinary domain
Cited by: 11
Author(s): Margot Galiere, Marisa Peyre, Facundo Muñoz, Mariline Poupaud, A. Dehove, François Roger, Isabelle Dieuzy-Labaye
Software Mentions: 7
Published: about 5 years ago

10.1098/rsos.200139

Behavioural inference from signal processing using animal-borne multi-sensor loggers: a novel solution to extend the knowledge of sea turtle ecology
Cited by: 23
Author(s): Lorène Jeantet, Víctor Planas‐Bielsa, Simon Benhamou, Sébastien Geiger, Jordan Martin, Flora Siegwalt, Pierre Lelong, Julie Gresser, Denis Etienne, Gaëlle Hiélard, Alexandre Arqué, Sidney Régis, Nicolas Lecerf, Cédric Frouin, Abdelwahab Benhalilou, Céline Murgale, Thomas Maillet, Lucas Andreani, Guilhem Campistron, Hélène Delvaux, Christelle Guyon, Sabine Richard, Fabien Lefèbvre, Nathalie Aubert, Caroline Habold, Yvon Le Maho, Damien Chevallier
Software Mentions: 7
Published: over 4 years ago

10.1186/s40249-019-0612-y

Seasonality modeling of the distribution of Aedes albopictus in China based on climatic and environmental suitability
Cited by: 31
Author(s): Xiao Zheng, Daibin Zhong, Yulan He, Guofa Zhou
Software Mentions: 7
Published: almost 5 years ago

10.3390/healthcare9030268

Measuring the Response Performance of U.S. States against COVID-19 Using an Integrated DEA, CART, and Logistic Regression Approach
Cited by: 11
Author(s): Yawei Xu, Yong Shin Park, Ju Dong Park
Software Mentions: 7
Published: over 3 years ago

10.1186/1471-2105-13-S10-S17

Gene network modular-based classification of microarray samples
Cited by: 4
Author(s): Pingzhao Hu, Shelley B. Bull, Hui Jiang
Software Mentions: 7
Published: over 12 years ago

10.1371/journal.pone.0189860

Survival analysis and classification methods for forest fire size
Cited by: 14
Author(s): Pier Olivier Tremblay, Thierry Duchesne, Steven G. Cumming
Software Mentions: 7
Published: almost 7 years ago

10.2196/17110

Predicting Metabolic Syndrome With Machine Learning Models Using a Decision Tree Algorithm: Retrospective Cohort Study
Cited by: 26
Author(s): Cheng Yu, Yu Lin, Chang Hsien Lin, Sen Te Wang, Shiyng Yu Lin, Sanders H. Lin, Jenny L Wu, Shy Shin Chang
Software Mentions: 7
Published: over 4 years ago

10.18632/oncotarget.16907

A risk prediction model for post-stroke depression in Chinese stroke survivors based on clinical and socio-psychological features
Cited by: 14
Author(s): Rui Li, Yingying Yue, Hanyang Jiang, Jian Lü, Aiqin Wu, Deqin Geng, Jun Wang, Jianxin Lü, Sheng‐Hua Li, Hua Tang, Xuesong Lu, Kezhong Zhang, Tian Liu, Yuan Yuan, Qiao Wang
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0245437

Identifying intentional injuries among children and adolescents based on Machine Learning
Cited by: 1
Author(s): Xiling Yin, Dan Ma, Kejing Zhu, Deyun Li
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-021-88440-z

Machine-learning based prediction of Cushing’s syndrome in dogs attending UK primary-care veterinary practice
Cited by: 7
Author(s): Imogen Schofield, David Brodbelt, Noel Kennedy, Stijn Niessen, David Church, Rebecca Geddes, Dan G. O’Neill
Software Mentions: 6
Published: over 3 years ago

10.1186/s12911-021-01463-4

Assessing elderly’s functional balance and mobility via analyzing data from waist-mounted tri-axial wearable accelerometers in timed up and go tests
Cited by: 8
Author(s): Lisha Yu, Yang Zhao, Hailiang Wang, Tien‐Lung Sun, Terrence E. Murphy, Kwok‐Leung Tsui
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2019.01056

Meta-Analysis of HTLV-1-Infected Patients Identifies CD40LG and GBP2 as Markers of ATLL and HAM/TSP Clinical Status: Two Genes Beat as One
Cited by: 5
Author(s): Eduardo R. Fukutani, Pablo Ivan Pereira Ramos, José Irahe Kasprzykowski, Lucas Gentil Azevedo, Moreno Magalhães de Souza Rodrigues, João Victor Lima, Helton Fábio Santos de Araújo, Kiyoshi F. Fukutani, Artur T. L. Queiroz
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-019-52899-8

Multiplex analysis of 40 cytokines do not allow separation between endometriosis patients and controls
Cited by: 11
Author(s): Tamara Knific, Dmytro Fishman, Andrej Vogler, Manuela Gstöttner, René Wenzl, Hedi Peterson, Tea Lanišnik Rižner
Software Mentions: 6
Published: about 5 years ago

10.1186/s13756-020-00825-3

Risk prediction models to guide antibiotic prescribing: a study on adult patients with uncomplicated upper respiratory tract infections in an emergency department
Cited by: 4
Author(s): Joshua Wong, Aung-Hein Aung, Weixiang Lian, David C. Lye, Chee-Kheong Ooi, Angela Chow
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-020-69101-z

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts
Cited by: 21
Author(s): Sheila A. Kitchen, Gregory Von Kuster, Kate L. Vasquez Kuntz, Hannah Reich, Webb Miller, Sean Griffin, Nicole D. Fogarty, Iliana B. Baums
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0207192

Mortality prediction in patients with isolated moderate and severe traumatic brain injury using machine learning models
Cited by: 66
Author(s): Cheng-Shyuan Rau, Pao‐Jen Kuo, Peng‐Chen Chien, Chun-Ying Huang, Hsiao-Yun Hsieh, Ching‐Hua Hsieh
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0217536

Challenges and caveats of a multi-center retrospective radiomics study: an example of early treatment response assessment for NSCLC patients using FDG-PET/CT radiomics
Cited by: 30
Author(s): Janita E. van Timmeren, Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Wouter van Elmpt, Dirk De Ruysscher, Jean-Pierre Muratet, Fabrice Denis, T. Schimek-Jasch, Ursula Nestle, Arthur Jochems, Henry C. Woodruff, Cary Oberije, Philippe Lambin
Software Mentions: 6
Published: over 5 years ago

10.1007/s00330-018-5680-z

Multiparametric ultrasomics of significant liver fibrosis: A machine learning-based analysis
Cited by: 82
Author(s): Wei Li, Yang Huang, Bowen Zhuang, Guangjian Liu, Hang-Tong Hu, Xin Li, Jin-Yu Liang, Zhu Wang, Xiaowen Huang, Chu-Qing Zhang, Si-Min Ruan, Xiaoyan Xie, Ming Kuang, Ming‐De Lu, Li-Da Chen, Wei Wang
Software Mentions: 6
Published: about 6 years ago

10.1155/2016/6794916

Determining Cutoff Point of Ensemble Trees Based on Sample Size in Predicting Clinical Dose with DNA Microarray Data
Cited by: 7
Author(s): Selen Yilmaz İşikhan, Erdem Karabulut, Celal Reha Alpar
Software Mentions: 6
Published: almost 9 years ago

10.1093/bib/bbaa138

A large-scale investigation and identification of methicillin-resistant <i>Staphylococcus aureus</i> based on peaks binning of matrix-assisted laser desorption ionization-time of flight MS spectra
Cited by: 22
Author(s): Hsin-Yao Wang, Chia-Ru Chung, Zhuo Wang, Shangfu Li, Bo Yu Chu, Jorng-Tzong Horng, Jang Jih Lu, Tzong-Yi Lee
Software Mentions: 6
Published: over 4 years ago

10.1155/2015/670691

Statistical Methods for Establishing Personalized Treatment Rules in Oncology
Cited by: 16
Author(s): Junsheng Ma, Brian P. Hobbs, Francesco C. Stingo
Software Mentions: 6
Published: almost 10 years ago

10.1007/s00109-020-01908-9

Immune landscape and a novel immunotherapy-related gene signature associated with clinical outcome in early-stage lung adenocarcinoma
Cited by: 17
Author(s): Xuanwen Bao, Run Shi, Tianyu Zhao, Yanfang Wang
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2020.01383

Prognostic Molecular Signatures for Metastatic Potential in Clinically Low-Risk Stage I and II Clear Cell Renal Cell Carcinomas
Cited by: 2
Author(s): Andrew Shih, Neal Murphy, Zachary Kozel, Paras Shah, Oksana Yaskiv, Houman Khalili, Anthony Liew, Louis R. Kavoussi, Simon Hall, Manish Vira, Xinhua Zhu, Annette T. Lee
Software Mentions: 6
Published: over 4 years ago

10.1186/s12968-015-0217-y

Mapping tissue inhomogeneity in acute myocarditis: a novel analytical approach to quantitative myocardial edema imaging by T2-mapping
Cited by: 51
Author(s): Bettina Baeßler, Frank Schaarschmidt, Anastasia Dick, Christian Stehning, Bernhard Schnackenburg, Guido Michels, David Maintz, Alexander C. Bunck
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0212778

Natural language processing and machine learning algorithm to identify brain MRI reports with acute ischemic stroke
Cited by: 53
Author(s): Chulho Kim, Vivienne J. Zhu, Jihad S. Obeid, Leslie A. Lenert
Software Mentions: 5
Published: over 5 years ago

10.3389/fmed.2021.697649

The Effect of Individual Musculoskeletal Conditions on Depression: Updated Insights From an Irish Longitudinal Study on Aging
Cited by: 8
Author(s): Wenyi Jin, Zilin Liu, Yubiao Zhang, Zhifei Che, Mingyong Gao
Software Mentions: 5
Published: about 3 years ago

10.1186/s12887-020-02411-3

Utility of medical record diagnostic codes to ascertain attention-deficit/hyperactivity disorder and learning disabilities in populations of children
Cited by: 6
Author(s): Yu Shi, Phillip J. Schulte, Andrew C. Hanson, Michael J. Zaccariello, Dayu Hu, Sheri Crow, Randall P. Flick, David O. Warner
Software Mentions: 5
Published: about 4 years ago

10.3390/s21092899

Non-Destructive Detection Pilot Study of Vegetable Organic Residues Using VNIR Hyperspectral Imaging and Deep Learning Techniques
Cited by: 6
Author(s): Yong Weon Seo, Giyoung Kim, Jongguk Lim, Ahyeong Lee, Balgeum Kim, Jae-Kyung Jang, Changyeun Mo, Moon S. Kim
Software Mentions: 5
Published: over 3 years ago

10.1128/AEM.00899-20

Effect of Weather on the Die-Off of Escherichia coli and Attenuated Salmonella enterica Serovar Typhimurium on Preharvest Leafy Greens following Irrigation with Contaminated Water
Cited by: 15
Author(s): Alexandra Belias, Adrian Sbodio, Pilar Truchado, Daniel Weller, Janneth Pinzon, Mariya Skots, Ana Allende, Daniel Munther, Trevor Suslow, Martin Wiedmann, Renata Ivanek
Software Mentions: 5
Published: over 4 years ago

10.1177/1352458520975323

Accurate classification of secondary progression in multiple sclerosis using a decision tree
Cited by: 12
Author(s): Ryan Ramanujam, Feng Zhu, Katharina Fink, Virginija Danylaitė Karrenbauer, Johannes Lorscheider, Pascal Benkert, Elaine Kingwell, Helen Tremlett, Jan Hillert, Ali Manouchehrinia
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-57968-x

Prognostic Nomogram For Locoregionally Advanced Nasopharyngeal Carcinoma
Cited by: 15
Author(s): Yanming Jiang, Song Qu, Xin-Bin Pan, Shan Huang, Xiaodong Zhu
Software Mentions: 5
Published: almost 5 years ago

10.2196/18001

Development of Phenotyping Algorithms for the Identification of Organ Transplant Recipients: Cohort Study
Cited by: 4
Author(s): Lee Wheless, Laura X. Baker, L Edwards, Nimay Anand, Kelly A. Birdwell, Allison Hanlon, Mary‐Margaret Chren
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0176338

Comparing herbaceous plant communities in active and passive riparian restoration
Cited by: 22
Author(s): Elise S. Gornish, Michael Lennox, D. J. Lewis, Kenneth W. Tate, Randall D. Jackson
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.ppat.1009101

RV144 HIV-1 vaccination impacts post-infection antibody responses
Cited by: 12
Author(s): Thembi Mdluli, Ningbo Jian, Bonnie M. Slike, Dominic Paquin‐Proulx, G. Donofrio, Aljawharah Alrubayyi, Syna Kuriakose Gift, Rebecca Grande, Mary Bryson, Anna Lee, Vincent Dussupt, Letzibeth Mendez-Riveria, Eric Sanders‐Buell, Agnès‐Laurence Chenine, Ursula Tran, Yifan Li, Eric N. Brown, Paul T. Edlefsen, Robert J. O’Connell, Peter B. Gilbert, Sorachai Nitayaphan, Punnee Pitisuttihum, Supachai Rerks-Ngarm, Merlin L. Robb, Robert A. Gramzinski, Galit Alter, Sodsai Tovanabutra, Ivelin S. Georgiev, Margaret E. Ackerman, Victoria R. Polonis, Sandhya Vasan, Nelson L. Michael, Jerome H. Kim, Michael A. Eller, Shelly J. Krebs, Morgane Rolland
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pntd.0009165

Heterogeneity in response to serological exposure markers of recent Plasmodium vivax infections in contrasting epidemiological contexts
Cited by: 14
Author(s): Jason Rosado, Michael White, Rhea J. Longley, Marcus Vinícius Guimarães Lacerda, Wuelton Marcelo Monteiro, Jessica Brewster, Jetsumon Sattabongkot, Mitchel Guzmán-Guzmán, Alejandro Llanos-Cuentas, Joseph M. Vinetz, Dionicia Gamboa, Ivo Müeller
Software Mentions: 5
Published: almost 4 years ago

10.1186/1471-2105-9-88

Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data
Cited by: 43
Author(s): Wouter Meuleman, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Jos H. Beijnen, Marcel J. T. Reinders, Lodewyk Wessels
Software Mentions: 5
Published: almost 17 years ago

Projects: cran: rpart

Papers Mentioning rpart 431