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Papers: 10.3390/ijms22031399

https://doi.org/10.3390/ijms22031399

DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Cited by: 5
Author(s): Salim Ghannoum, Waldir Leoncio Netto, Damiano Fantini, Benjamin Ragan-Kelley, Amirabbas Parizadeh, Emma Jonasson, Anders Ståhlberg, Hesso Farhan, Alvaro Köhn‐Luque
Published: over 4 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
Very Likely Science (100)
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
Very Likely Science (100)
cran: DIscBIO
A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
Papers that mentioned: 1
Very Likely Science (100)
cran: enrichR
Provides an R Interface to 'Enrichr'
Papers that mentioned: 60
Likely Science (58)
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
Very Likely Science (75)
cran: rpart
Recursive Partitioning and Regression Trees
Papers that mentioned: 431
Very Likely Science (100)
cran: RWeka
R/Weka Interface
Papers that mentioned: 50
Very Likely Science (75)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)