Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms22031399

https://doi.org/10.3390/ijms22031399

DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics

Cited by: 5
Author(s): Salim Ghannoum, Waldir Leoncio Netto, Damiano Fantini, Benjamin Ragan-Kelley, Amirabbas Parizadeh, Emma Jonasson, Anders Ståhlberg, Hesso Farhan, Alvaro Köhn‐Luque
Published: almost 4 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
cran: DIscBIO
A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
Papers that mentioned: 1
cran: enrichR
Provides an R Interface to 'Enrichr'
Papers that mentioned: 60
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
cran: rpart
Recursive Partitioning and Regression Trees
Papers that mentioned: 431
cran: RWeka
R/Weka Interface
Papers that mentioned: 50
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512