cran: indicspecies | Projects | Ecosyste.ms: Papers

10.7717/peerj.9539

The importance of open science for biological assessment of aquatic environments
Cited by: 15
Author(s): Marcus W. Beck, Casey C. O’Hara, Julia S. Stewart Lowndes, Raphael D. Mazor, Susanna Theroux, David J. Gillett, Belize Lane, Gregory Gearheart
Software Mentions: 17
Published: over 4 years ago

10.3389/fmicb.2019.01726

Diversity, Distribution and Co-occurrence Patterns of Bacterial Communities in a Karst Cave System
Cited by: 66
Author(s): Hai-Zhen Zhu, Z.F. Zhang, Nan Zhou, Cheng‐Ying Jiang, Baojun Wang, Lei Cai, Shuang‐Jiang Liu
Software Mentions: 17
Published: over 5 years ago

10.3389/fmicb.2015.00104

Long-term forest soil warming alters microbial communities in temperate forest soils
Cited by: 237
Author(s): Kristen M. DeAngelis, Grace Pold, Begüm D. Topçuoğlu, Linda T. A. van Diepen, Rebecca Varney, Jeffrey L. Blanchard, Jerry M. Melillo, Serita D. Frey
Software Mentions: 15
Published: over 9 years ago

10.1038/s42003-021-01796-w

Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adults
Cited by: 73
Author(s): Rong Xu, Renfei Lu, Tao Zhang, Qian Wu, Wei Cai, Xudong Han, Zhenzhou Wan, Xia Jin, Zhigang Zhang, Chiyu Zhang
Software Mentions: 15
Published: over 3 years ago

10.3389/fmicb.2019.01775

Temporal Variation in the Microbiome of Acropora Coral Species Does Not Reflect Seasonality
Cited by: 23
Author(s): Hannah E. Epstein, Hillary A. Smith, Neal E. Cantin, Véronique J. L. Mocellin, Gergely Torda, Madeleine J. H. van Oppen
Software Mentions: 14
Published: about 5 years ago

10.1038/s41396-018-0251-5

Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammals
Cited by: 56
Author(s): Amanda C. Perofsky, Rebecca J. Lewis, Lauren Ancel Meyers
Software Mentions: 12
Published: about 6 years ago

10.3389/fmicb.2020.01116

Crop Management Impacts the Soybean (Glycine max) Microbiome
Cited by: 41
Author(s): Reid Longley, Zachary A Noel, Gian Maria Niccolò Benucci, Martin I. Chilvers, Frances Trail, Gregory Bonito
Software Mentions: 12
Published: over 4 years ago

10.1038/s42003-020-01166-y

Spatial patterns of microbial communities across surface waters of the Great Barrier Reef
Cited by: 28
Author(s): Pedro R. Frade, Bettina Glasl, Samuel A. Matthews, Camille Mellin, Ester Á. Serrão, Kennedy Wolfe, Peter J. Mumby, Nicole S. Webster, David G. Bourne
Software Mentions: 11
Published: about 4 years ago

10.1371/journal.pone.0156825

Inundation and Fire Shape the Structure of Riparian Forests in the Pantanal, Brazil
Cited by: 32
Author(s): Wellinton de Sá Arruda, Jens Oldeland, Antônio Conceição Paranhos Filho, Arnildo Pott, Nicolay Leme da Cunha, Iria Hiromi Ishii, Geraldo Alves Damasceno
Software Mentions: 11
Published: over 8 years ago

10.3389/fmicb.2017.00682

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)
Cited by: 314
Author(s): David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, Philip Hugenholtz
Software Mentions: 11
Published: over 7 years ago

10.3390/microorganisms8040550

Long-Term Rewetting of Three Formerly Drained Peatlands Drives Congruent Compositional Changes in Pro- and Eukaryotic Soil Microbiomes through Environmental Filtering
Cited by: 22
Author(s): Micha Weil, Haitao Wang, Mia M. Bengtsson, Daniel Köhn, Anke Günther, Gerald Jurasinski, John Couwenberg, Wakene Negassa, Dominik Zak, Tim Urich
Software Mentions: 11
Published: over 4 years ago

10.1371/journal.pone.0238219

Ground-dwelling arthropods of pinyon-juniper woodlands: Arthropod community patterns are driven by climate and overall plant productivity, not host tree species
Cited by: 6
Author(s): Derek A. Uhey, Hannah Lee Riskas, Aaron D. Smith, Richard W. Hofstetter
Software Mentions: 11
Published: about 4 years ago

10.1128/AEM.00880-20

Community Structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy
Cited by: 7
Author(s): Alden C. Dirks, Randall D. Jackson
Software Mentions: 10
Published: about 4 years ago

10.7717/peerj.1511

Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events
Cited by: 48
Author(s): Florent E. Angly, Candice Heath, Thomas C. Morgan, Hemerson Tonin, V. I. Rich, Britta Schaffelke, David G. Bourne, Gene W. Tyson
Software Mentions: 10
Published: almost 9 years ago

10.1002/ece3.7907

Inventory of the benthic eukaryotic diversity in the oldest European lake
Cited by: 2
Author(s): Benjamin Wilden, Walter Traunspurger, Stefan Geisen
Software Mentions: 10
Published: over 3 years ago

10.1186/s40168-019-0756-9

Agricultural management and plant selection interactively affect rhizosphere microbial community structure and nitrogen cycling
Cited by: 174
Author(s): Jennifer E. Schmidt, Angela D. Kent, Vanessa Brisson, Amélie C. M. Gaudin
Software Mentions: 10
Published: almost 5 years ago

10.1186/s40168-019-0743-1

Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms
Cited by: 128
Author(s): Philipp Rausch, Malte Rühlemann, Shauni Doms, Shauni Doms, Tal Dagan, Katja Dierking, Hanna Domin, Sebastian Fraune, Jakob von Frieling, Ute Hentschel, Femke Anouska Heinsen, Marc P. Höppner, Martin T. Jahn, Cornelia Jaspers, Kohar Annie B. Kissoyan, Daniela Langfeldt, Ateequr Rehman, Thorsten B.H. Reusch, Thomas Roeder, Ruth A. Schmitz, Hinrich Schulenburg, Ryszard Soluch, Felix Sommer, Eva H. Stukenbrock, Nancy Weiland‐Bräuer, Philip Rosenstiel, André Franke, Thomas C. G. Bosch, John F. Baines
Software Mentions: 9
Published: about 5 years ago

10.1264/jsme2.ME18109

Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields
Cited by: 33
Author(s): Turgut Yiğit Akyol, Rieko Niwa, Hideki Hirakawa, Hayato Maruyama, Takumi Sato, Takae Suzuki, Ayako Fukunaga, Takashi Sato, Shigenobu Yoshida, Keitaro Tawaraya, Masanori Saitô, Tatsuhiro Ezawa, Shusei Sato
Software Mentions: 9
Published: almost 6 years ago

10.1002/ece3.6079

Species specificity and intraspecific variation in the chemical profiles of Heliconius butterflies across a large geographic range
Cited by: 28
Author(s): Kathy Darragh, Gabriela Montejo‐Kovacevich, Krzysztof M. Kozak, Colin R. Morrison, Clarisse M. É. Figueiredo, Jonathan Stuart Ready, Camilo Salazar, Mauricio Linares, Kelsey J. R. P. Byers, Richard M. Merrill, W. Owen McMillan, Stefan Schulz, Chris D. Jiggins
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-019-50540-2

Deciphering bacterial and fungal endophyte communities in leaves of two maple trees with green islands
Cited by: 23
Author(s): Franziska Wemheuer, Bernd Wemheuer, Rolf Daniel, Stefan Vidal
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-018-38339-z

Spatial distribution of prokaryotic communities in hypersaline soils
Cited by: 26
Author(s): Blanca Vera-Gargallo, Taniya Roy Chowdhury, Joseph Brown, Sarah Fansler, Ana Durán‐Viseras, Cristina Sánchez‐Porro, Vanessa Bailey, Janet Jansson, António Ventosa
Software Mentions: 9
Published: over 5 years ago

10.1186/s12866-021-02211-4

Microbiome characterization of defensive tissues in the model anemone Exaiptasia diaphana
Cited by: 10
Author(s): Justin Maire, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 9
Published: over 3 years ago

10.3389/fmicb.2021.649981

Differential Impacts of Water Table and Temperature on Bacterial Communities in Pore Water From a Subalpine Peatland, Central China
Cited by: 7
Author(s): Wen Tian, Xiang Xiao, Hongmei Wang
Software Mentions: 9
Published: over 3 years ago

10.1093/femsec/fiab097

Host species shape the community structure of culturable endophytes in fruits of wild berry species (Vaccinium myrtillus L., Empetrum nigrum L. and Vaccinium vitis-idaea L.)
Cited by: 9
Author(s): Minh-Phuong Nguyen, Kaisa Lehosmaa, Françoise Martz, Janne J. Koskimäki, Anna Maria Pirttilä, Hely Häggman
Software Mentions: 9
Published: over 3 years ago

10.3390/microorganisms9061326

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Cited by: 5
Author(s): Thijs Van Gerrewey, Christophe El‐Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek‐Maarten Kerckhof, Nico Boon, Danny Geelen
Software Mentions: 8
Published: over 3 years ago

10.1186/s40168-018-0593-2

Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies
Cited by: 61
Author(s): Rachael E. Antwis, Jessica M. D. Lea, Bryony Unwin, Susanne Shultz
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0187758

Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest
Cited by: 20
Author(s): Fatima Zahra Maghnia, Younes Abbas, Frédéric Mahe, Benaissa Kerdouh, Estelle Tournier, Mohamed Ouadji, Pierre Tisseyre, Yves Prin, Naïma El Ghachtouli, Salah Eddine Bakkali Yakhlef, Robin Duponnois, Hervé Sanguin
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41396-019-0383-2

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
Cited by: 596
Author(s): Samiran Banerjee, Florian Walder, Lucie Büchi, Marion Meyer, Alain Held, Andreas Gattinger, Thomas Keller, Raphaël Charles, Marcel G. A. van der Heijden
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0231875

Soil fungal communities differ between shaded and sun-intensive coffee plantations in El Salvador
Cited by: 10
Author(s): M. V. Rao, Robert A. Rice, Robert C. Fleischer, Carly R. Muletz‐Wolz
Software Mentions: 8
Published: over 4 years ago

10.1038/s41396-021-00902-4

Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefs
Cited by: 51
Author(s): Justin Maire, Sam K. Girvan, Sophie E. Barkla, Alexis Perez‐Gonzalez, David J. Suggett, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 8
Published: over 3 years ago

10.1007/s00300-021-02823-6

Seasonal dynamics of meroplankton in a sub-Antarctic fjord (Southern Patagonia, Chile)
Cited by: 1
Author(s): Santiago E A Pineda-Metz, Américo Montiel
Software Mentions: 8
Published: over 3 years ago

10.1128/mSystems.01153-20

Bacterial Communities in Concrete Reflect Its Composite Nature and Change with Weathering
Cited by: 8
Author(s): E. Anders Kiledal, Jessica L. Keffer, Julia A. Maresca
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-019-6251-7

Changes of intestinal bacterial microbiota in coronary heart disease complicated with nonalcoholic fatty liver disease
Cited by: 33
Author(s): Yiwen Zhang, Jianming Xu, Xuemei Wang, Xinhua Ren, Yulan Liu
Software Mentions: 8
Published: almost 5 years ago

10.3389/fmicb.2021.620458

Thermal Stress Interacts With Surgeonfish Feces to Increase Coral Susceptibility to Dysbiosis and Reduce Tissue Regeneration
Cited by: 8
Author(s): Leïla Ezzat, Sarah Merolla, Cody S. Clements, Katrina S. Munsterman, Kaitlyn Landfield, Colton Stensrud, Emily R. Schmeltzer, Deron E. Burkepile, Rebecca Vega Thurber
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0167265

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna
Cited by: 13
Author(s): Luca Malatesta, Federico Maria Tardella, Karina Piermarteri, Andrea Catorci
Software Mentions: 7
Published: almost 8 years ago

10.3389/fmicb.2020.592189

From Forest Soil to the Canopy: Increased Habitat Diversity Does Not Increase Species Richness of Cercozoa and Oomycota in Tree Canopies
Cited by: 6
Author(s): Robin-Tobias Jauss, Susanne Walden, Anna Maria Fiore‐Donno, Kenneth Dumack, Stefan Schaffer, Ronny Wolf, Martin Schlegel, Michael Bonkowski
Software Mentions: 7
Published: almost 4 years ago

10.1186/1471-2164-15-480

Detection of copy number variations and their effects in Chinese bulls
Cited by: 50
Author(s): Liangzhi Zhang, Shangang Jia, Mingjuan Yang, Yao Xu, Congjun Li, Jiajie Sun, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Yang Zhou, Chunlei Zhang, Xin Zhao, Hong Chen
Software Mentions: 7
Published: over 10 years ago

10.1002/ece3.5188

Invasive species removal increases species and phylogenetic diversity of wetland plant communities
Cited by: 12
Author(s): Shane C. Lishawa, Beth A. Lawrence, Dennis A. Albert, Daniel J. Larkin, Nancy C. Tuchman
Software Mentions: 7
Published: over 5 years ago

10.3389/fpls.2019.00895

Aphids Influence Soil Fungal Communities in Conventional Agricultural Systems
Cited by: 14
Author(s): Thomas David Joseph Wilkinson, Jean‐Pascal Miranda, Julia Ferrari, Susan Hartley, Angela Hodge
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.8056

Different nitrogen sources speed recovery from corallivory and uniquely alter the microbiome of a reef-building coral
Cited by: 18
Author(s): Mallory M. Rice, Rebecca L. Maher, Rebecca Vega Thurber, Deron E. Burkepile
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-019-54532-0

Variations in terrestrial arthropod DNA metabarcoding methods recovers robust beta diversity but variable richness and site indicators
Cited by: 19
Author(s): Teresita M. Porter, Dave M. Morris, Nathan Basiliko, Mehrdad Hajibabaei, Daniel Doucet, Susan Bowman, Erik J. S. Emilson, Caroline E. Emilson, Derek Chartrand, Kerrie L. Wainio-Keizer, Armand Séguin, Lisa Venier
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2020.01330

Frog Skin Microbiota Vary With Host Species and Environment but Not Chytrid Infection
Cited by: 11
Author(s): Ariel Kruger
Software Mentions: 7
Published: over 4 years ago

10.3389/fmicb.2019.00281

Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic Ocean
Cited by: 36
Author(s): Jackie Zorz, Ciara Willis, A. Comeau, Morgan G. I. Langille, Catherine L. Johnson, William K. W. Li, Julie LaRoche
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2021.601901

The Genomic Capabilities of Microbial Communities Track Seasonal Variation in Environmental Conditions of Arctic Lagoons
Cited by: 0
Author(s): Kristina Baker, Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 7
Published: over 3 years ago

10.1128/mSphere.00169-17

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes
Cited by: 52
Author(s): Alexandra M. Linz, Benjamin C. Crary, Ashley Shade, Sarah M. Owens, Jack A. Gilbert, Rob Knight, Katherine D. McMahon
Software Mentions: 7
Published: over 7 years ago

10.1038/s41396-020-0690-7

Assessing similarities and disparities in the skin microbiota between wild and laboratory populations of house mice
Cited by: 20
Author(s): Meriem Belheouane, Marie Vallier, Aleksa Čepić, Chin-Wan Chung, Saleh M. Ibrahim, John F. Baines
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-018-37026-3

Microbial embryonal colonization during pipefish male pregnancy
Cited by: 28
Author(s): Anne Beemelmanns, Maude Poirier, Till Bayer, Sven Kuenzel, Olivia Roth
Software Mentions: 7
Published: almost 6 years ago

10.1128/mBio.02723-20

Natural Bacterial Assemblages in Arabidopsis thaliana Tissues Become More Distinguishable and Diverse during Host Development
Cited by: 17
Author(s): Kathleen Beilsmith, Matthew Perisin, Joy Bergelson
Software Mentions: 7
Published: over 3 years ago

10.1038/s41396-018-0159-0

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom
Cited by: 346
Author(s): Yuanyuan Xue, Huihuang Chen, Jun Yang, Min Liu, Bangqin Huang, Jun Yang
Software Mentions: 7
Published: over 6 years ago

10.1128/mSphere.00670-20

Natural Infection with Giardia Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome
Cited by: 26
Author(s): Alexander S. F. Berry, Keegan S. Johnson, Rene Martins, Megan C. Sullivan, Camila Farias Amorim, Alexandra Putre, Aiysha Scott, Shuai Wang, Brianna Lindsay, Robert N. Baldassano, Thomas J. Nolan, Daniel P. Beiting
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2016.00399

Associations between Ectomycorrhizal Fungi and Bacterial Needle Endophytes in Pinus radiata: Implications for Biotic Selection of Microbial Communities
Cited by: 21
Author(s): Megan A. Rúa, Emily Wilson, S. D. Steele, Arielle R. Munters, Jason D. Hoeksema, A. Carolin Frank
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2021.592725

Local Geomorphological Gradients and Land Use Patterns Play Key Role on the Soil Bacterial Community Diversity and Dynamics in the Highly Endemic Indigenous Afrotemperate Coastal Scarp Forest Biome
Cited by: 13
Author(s): Henry Joseph Oduor Ogola, Ramganesh Selvarajan, Memory Tekere
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00398-20

System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor
Cited by: 3
Author(s): Hsiao Pei Lu, Yung Hsien Shao, Jer Horng Wu, Chih‐hao Hsieh
Software Mentions: 6
Published: about 4 years ago

10.1186/s42523-019-0008-0

Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala
Cited by: 36
Author(s): Michaela D. J. Blyton, Rochelle M. Soo, Desley A. Whisson, Karen J. Marsh, Jack H. Pascoe, Mark Le, William J. Foley, Philip Hugenholtz, Ben D. Moore
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.01269-20

Structure of Chimpanzee Gut Microbiomes across Tropical Africa
Cited by: 7
Author(s): Clifton P. Bueno de Mesquita, Lauren M. Nichols, Matthew J. Gebert, Caihong Vanderburgh, Gaëlle Bocksberger, Jack D. Lester, Ammie K. Kalan, Paula Dieguez, Maureen S. McCarthy, Anthony Agbor, Paula Álvarez Varona, Ayuk Emmanuel Ayimisin, Mattia Bessone, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Tobias Deschner, Villard Ebot Egbe, Annemarie Goedmakers, Anne Céline Granjon, Cyril C. Grueter, Josephine Head, R. Adriana Hernández‐Aguilar, Kathryn J. Jeffery, Sorrel Jones, Parag Kadam, M. L. Kaiser, Juan Lapuente, Bradley Larson, Sergio Marrocoli, David Morgan, Badru Mugerwa, Felix Mulindahabi, Emily Neil, Protais Niyigaba, Liliana Pacheco, Alex K. Piel, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Douglas Sheil, Volker Sommer, Fiona Stewart, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbühler, Jan F. Gogarten, Anna Heintz‐Buschart, Alexandra N. Muellner‐Riehl, Christophe Boesch, Hjalmar S. Kühl, Noah Fierer, Mimi Arandjelovic, Robert R. Dunn
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2016.00372

A Combination of Biochar–Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties
Cited by: 62
Author(s): Jun Ye, Rui Zhang, Shaun Nielsen, Stephen Joseph, Danfeng Huang, Torsten Thomas
Software Mentions: 6
Published: over 8 years ago

10.1002/ece3.7171

Identification of novel bacterial biomarkers to detect bird scavenging by invasive rats
Cited by: 3
Author(s): Carly R. Muletz‐Wolz, Erin E. Wilson Rankin, Sarah McGrath‐Blaser, Madhvi X. Venkatraman, Jesús E. Maldonado, Daniel S. Gruner, Robert C. Fleischer
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-020-79130-3

Skin microbiome correlates with bioclimate and Batrachochytrium dendrobatidis infection intensity in Brazil’s Atlantic Forest treefrogs
Cited by: 14
Author(s): Katharina Ruthsatz, Mariana L. Lyra, Carolina Lambertini, Anat M. Belasen, Thomas S. Jenkinson, Domingos da Silva Leite, C. Guilherme Becker, Célio F. B. Haddad, Timothy Y. James, Kelly R. Zamudio, Luı́s Felipe Toledo, Miguel Vences
Software Mentions: 6
Published: almost 4 years ago

10.1002/ece3.5361

Drivers and patterns of microbial community assembly in a Lyme disease vector
Cited by: 30
Author(s): Lisa I. Couper, Jessica Y. Kwan, Joyce Ma, Andrea Swei
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.01452

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition
Cited by: 88
Author(s): Jacob D. Hosen, Catherine M. Febria, Byron C. Crump, Margaret A. Palmer
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2021.614634

Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard)
Cited by: 14
Author(s): Lisa-Marie Delpech, Tobias R. Vonnahme, Maeve McGovern, Rolf Gradinger, Kim Præbel, Amanda Poste
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0235726

Diversity of mosquitoes (Diptera: Culicidae) collected in different types of larvitraps in an Amazon rural settlement
Cited by: 8
Author(s): João Aprígio Guerra de Almeida, Heliana Christy Matos Belchior, Claudia María Ríos-Velásquez, Felipe Arley Costa Pessoa
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-019-52148-y

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
Cited by: 64
Author(s): Vanessa Brisson, Jennifer E. Schmidt, Trent Northen, John P. Vogel, Amélie C. M. Gaudin
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-020-00957-z

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
Cited by: 11
Author(s): Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Dong Wang, Nicola Falco, Nicholas J. Bouskill, Michelle Newcomer, Peter Nico, Haruko M. Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan S. Hubbard, Jillian F. Banfield
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0217198

The transition from bee-to-fly dominated communities with increasing elevation and greater forest canopy cover
Cited by: 30
Author(s): Lindsie M. McCabe, Ella Colella, Paige R. Chesshire, Dave Smith, Neil S. Cobb
Software Mentions: 6
Published: over 5 years ago

10.1038/s41597-019-0172-9

Bacterial succession along a sediment porewater gradient at Lake Neusiedl in Austria
Cited by: 20
Author(s): Avril Jean Elisabeth von Hoyningen-Huene, Dominik Schneider, Dario Fussmann, Andreas Reimer, Gernot Arp, Rolf Daniel
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms8101566

The Prokaryotic Microbiome of Acropora digitifera is Stable under Short-Term Artificial Light Pollution
Cited by: 6
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Celine Luisa D. Campos, Sherry Lyn G. Sayco, Patrick C. Cabaitan, Yaeli Rosenberg, Inbal Ayalon, Oren Levy, Cecilia Conaco
Software Mentions: 6
Published: about 4 years ago

10.1093/femsec/fiaa205

Effects of simulated drought on biological soil quality, microbial diversity and yields under long-term conventional and organic agriculture
Cited by: 23
Author(s): Dominika Kundel, Natacha Bodenhausen, Helene Bracht Jørgensen, Jaak Truu, Klaus Birkhofer, Katarina Hedlund, Paul Mäder, Andreas Fließbach
Software Mentions: 6
Published: about 4 years ago

10.1186/s40168-019-0639-0

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
Cited by: 61
Author(s): Rachael E. Antwis, Katie L. Edwards, Bryony Unwin, Susan L. Walker, Susanne Shultz
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms7020037

Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes
Cited by: 12
Author(s): Bernd Wemheuer, Torsten Thomas, Franziska Wemheuer
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2020.01036

Niche Differentiation in the Composition, Predicted Function, and Co-occurrence Networks in Bacterial Communities Associated With Antarctic Vascular Plants
Cited by: 29
Author(s): Qian Zhang, Jacquelinne J. Acuña, Nitza G. Inostroza, Paola Durán, Marı́a de la Luz Mora, Michael J. Sadowsky, Milko A. Jorquera
Software Mentions: 6
Published: over 4 years ago

10.1186/s40168-019-0705-7

Microbial indicators of environmental perturbations in coral reef ecosystems
Cited by: 109
Author(s): Bettina Glasl, David G. Bourne, Pedro R. Frade, Torsten Thomas, Britta Schaffelke, Nicole S. Webster
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2016.02064

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System
Cited by: 177
Author(s): Manoeli Lupatini, G.W. Korthals, Mattias de Hollander, Thierry Janssens, Eiko E. Kuramae
Software Mentions: 6
Published: almost 8 years ago

10.3390/jof7080607

The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany
Cited by: 12
Author(s): Kathrin Blumenstein, Johanna Bußkamp, Gitta Jutta Langer, Ewald Langer, Eeva Terhonen
Software Mentions: 6
Published: over 3 years ago

10.3390/microorganisms8060906

Meta-Analysis of Microbial Communities in Hot Springs: Recurrent Taxa and Complex Shaping Factors beyond pH and Temperature
Cited by: 23
Author(s): Francisco Luis Massello, Chia Sing Chan, Kok Gan Chan, Kian Mau Goh, Edgardo R. Donati, María Sofía Urbieta
Software Mentions: 5
Published: over 4 years ago

10.1111/1751-7915.12348

Towards the development of multifunctional molecular indicators combining soil biogeochemical and microbiological variables to predict the ecological integrity of silvicultural practices
Cited by: 2
Author(s): Vincent Peck, Liliana Quiza, Jean‐Philippe Buffet, Mondher Khdhiri, Audrey‐Anne Durand, Alain Paquette, Nelson Thiffault, Christian Messier, Nadyre Beaulieu, Claude Guertin, Philippe Constant
Software Mentions: 5
Published: over 8 years ago

10.3390/microorganisms9071457

Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Cited by: 7
Author(s): Julia Hassa, Johanna Klang, Dirk Benndorf, Marcel Pohl, Benedikt Hülsemann, Torsten Mächtig, Mathias Effenberger, Alfred Pühler, Andreas Schlüter, Susanne Theuerl
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.11898

Biogeography, diversity and environmental relationships of shelf and deep-sea benthic Amphipoda around Iceland
Cited by: 7
Author(s): Anne‐Nina Lörz, Stefanie Kaiser, Jens Oldeland, Caroline Stolter, Karlotta Kürzel, Saskia Brix
Software Mentions: 5
Published: about 3 years ago

10.7717/peerj.8546

Proteomic similarity of the Littorinid snails in the evolutionary context
Cited by: 13
Author(s): Arina L. Maltseva, Marina A. Varfolomeeva, Arseniy Lobov, Polina Tikanova, Marina Panova, Natalia Mikhailova, Andrei I. Granovitch
Software Mentions: 5
Published: over 4 years ago

10.1186/s40168-017-0334-y

Enrichment of beneficial bacteria in the skin microbiota of bats persisting with white-nose syndrome
Cited by: 144
Author(s): Virginie Lemieux-Labonté, Anouk Simard, Craig K. R. Willis, François‐Joseph Lapointe
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2021.617280

Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments
Cited by: 9
Author(s): Annika Schnakenberg, David A. Aromokeye, Ajinkya Kulkarni, Lisa Maier, Lea C Wunder, Tim Richter-Heitmann, Thomas Pape, Petra Pop Ristova, Solveig I Bühring, Ingrid Dohrmann, Gerhard Bohrmann, Sabine Kasten, Michael W. Friedrich
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.7014

Soil bacterial and fungal communities of six bahiagrass cultivars
Cited by: 10
Author(s): Lukas Beule, Ko‐Hsuan Chen, Chih‐Ming Hsu, Cheryl L. Mackowiak, José C. B. Dubeux, Ann R. Blount, Hui‐Ling Liao
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-020-00858-1

Using soil bacterial communities to predict physico-chemical variables and soil quality
Cited by: 113
Author(s): Syrie M. Hermans, Hannah Buckley, Bradley S. Case, Fiona Curran-Cournane, Mykel R. Taylor, Gavin Lear
Software Mentions: 5
Published: over 4 years ago

10.1007/s11356-019-06245-0

The effect of railways on bird diversity in farmland
Cited by: 9
Author(s): Joanna Kajzer‐Bonk, Piotr Skórka, Maciej Bonk, Magdalena Lenda, Elżbieta Rożej-Pabijan, Marta Wantuch, Dawid Moroń
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2017.01574

Culture Media and Individual Hosts Affect the Recovery of Culturable Bacterial Diversity from Amphibian Skin
Cited by: 25
Author(s): Daniel Medina, Jenifer B. Walke, Zachary Gajewski, Matthew H. Becker, Meredith C. Swartwout, Lisa K. Belden
Software Mentions: 5
Published: about 7 years ago

10.1002/ece3.4500

A metabarcoding approach for the feeding habits of European hake in the Adriatic Sea
Cited by: 17
Author(s): Giulia Riccioni, Marco Stagioni, Corrado Piccinetti, Simone Libralato
Software Mentions: 5
Published: about 6 years ago

10.1186/s12866-021-02123-3

Long-term stability of the urogenital microbiota of asymptomatic European women
Cited by: 13
Author(s): Magdalena Ksiezarek, Svetlana Ugarčina Perović, Júlio César Rocha, Filipa Grosso, Luı́sa Peixe
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0212185

Physical environmental conditions determine ubiquitous spatial differentiation of standing plants and seedbanks in Neotropical riparian dry forests
Cited by: 2
Author(s): Alejandra De León Ibarra, Néstor A. Mariano, Valentino Sorani, Gabriel Flores‐Franco, Evodio Rendón Alquicira, Elisabet V. Wehncke
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2021.660749

Positive Effects of Crop Diversity on Productivity Driven by Changes in Soil Microbial Composition
Cited by: 45
Author(s): Laura Stefan, Martin Hartmann, Nadine Engbersen, Johan Six, Christian Schöb
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2019.01519

Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests
Cited by: 57
Author(s): Amélie Dukunde, Dominik Schneider, M. Schmidt, Edzo Veldkamp, Rolf Daniel
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-31795-7

Macrofungal species distributions depend on habitat partitioning of topography, light, and vegetation in a temperate mountain forest
Cited by: 29
Author(s): Yun Chen, Zuoqiang Yuan, Bi Shi, Xueying Wang, Ye Yongzhong, Jens‐Christian Svenning
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2019.00481

Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype
Cited by: 40
Author(s): Gregory Bonito, Gian Maria Niccolò Benucci, Khalid Hameed, Deborah Weighill, Piet Jones, Ko‐Hsuan Chen, Daniel Jacobson, Christopher W. Schadt, Rytas Vilgalys
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9091803

Phytate and Microbial Suspension Amendments Increased Soybean Growth and Shifted Microbial Community Structure
Cited by: 5
Author(s): Boshir Ahmed, Jean-Baptiste Floc’h, Lahrach Zakaria, Mohamed Hijri
Software Mentions: 5
Published: about 3 years ago

10.1126/sciadv.aau4578

Fungal diversity regulates plant-soil feedbacks in temperate grassland
Cited by: 134
Author(s): Marina Semchenko, Jonathan W. Leff, Yudi M. Lozano, Sirgi Saar, John Davison, Anna Wilkinson, Benjamin G. Jackson, William J. Pritchard, Jonathan R. De Long, Simon Oakley, Kelly E. Mason, Nicholas J. Ostle, Elizabeth M. Baggs, David Johnson, Noah Fierer, Richard D. Bardgett
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2020.00582

Niche Differentiation of Host-Associated Pelagic Microbes and Their Potential Contribution to Biogeochemical Cycling in Artificially Warmed Lakes
Cited by: 12
Author(s): Sainur Samad, Hyo‐Jung Lee, Sławek Cerbin, Marion Meima-Franke, Paul L. E. Bodelier
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0183906

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship
Cited by: 39
Author(s): Avery B. Paxton, Emily A. Pickering, Alyssa M. Adler, James C. Taylor, Charles H. Peterson
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0255391

Not just trash birds: Quantifying avian diversity at landfills using community science data
Cited by: 9
Author(s): Zachary J. Arnold, Seth J. Wenger, Richard J. Hall
Software Mentions: 5
Published: about 3 years ago

10.4269/ajtmh.18-0469

Potential Biological Control of Schistosomiasis by Fishes in the Lower Senegal River Basin
Cited by: 11
Author(s): Martin C. Arostegui, Chelsea L. Wood, Isabel J. Jones, Andrew J. Chamberlin, Nicolas Jouanard, Daouda Faye, Armand M. Kuris, Gilles Riveau, Giulio A. De Leo, Susanne H. Sokolow
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0225001

Mammary microbiome of lactating organic dairy cows varies by time, tissue site, and infection status
Cited by: 38
Author(s): Tucker Andrews, Deborah A. Neher, Thomas R. Weicht, John W. Barlow
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2019.01018

Plant Diversity and Fertilizer Management Shape the Belowground Microbiome of Native Grass Bioenergy Feedstocks
Cited by: 17
Author(s): Daniel Revillini, Gail W. T. Wilson, R. M. Miller, Ryan C. Lancione, Nancy Collins Johnson
Software Mentions: 5
Published: about 5 years ago

Projects: cran: indicspecies

Papers Mentioning indicspecies 218