cran: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.653357

Combination of Immune-Related Genomic Alterations Reveals Immune Characterization and Prediction of Different Prognostic Risks in Ovarian Cancer
Cited by: 2
Author(s): Xibo Zhao, Shanshan Cong, Qiuyan Guo, Yan Cheng, Tian Liang, Jing Wang, Guangmei Zhang
Software Mentions: 8
Published: over 5 years ago

10.3389/fcvm.2020.586871

Predicting Diagnostic Gene Biomarkers Associated With Immune Infiltration in Patients With Acute Myocardial Infarction
Cited by: 64
Author(s): Enfa Zhao, Hang Xie, Yushun Zhang
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-020-61643-6

Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer
Cited by: 7
Author(s): Xia Li, Paul Van Hummelen, Matthew Kubit, Ho‐Joon Lee, John Bell, Susan M. Grimes, Christina Wood-Bouwens, Stephanie Greer, Tyler Barker, Derrick S. Haslem, James M. Ford, Gail Fulde, Hanlee P. Ji, Lincoln Nadauld
Software Mentions: 8
Published: over 6 years ago

10.1002/cam4.4156

Comprehensive analysis of a new prognosis signature based on histone deacetylases in clear cell renal cell carcinoma
Cited by: 6
Author(s): Fajuan Cheng, Bin Zheng, Jianwei Wang, Guiting Zhao, Zhongshun Yao, Zhihong Niu
Software Mentions: 8
Published: about 5 years ago

10.7717/peerj.10682

Identification of the hub genes in gastric cancer through weighted gene co-expression network analysis
Cited by: 7
Author(s): Chunyang Li, Haopeng Yu, Yajing Sun, Xiaoxi Zeng, Wei Zhang
Software Mentions: 8
Published: over 5 years ago

10.1002/cam4.3655

Immune landscape and a promising immune prognostic model associated with TP53 in early‐stage lung adenocarcinoma
Cited by: 17
Author(s): Chia-Chien Wu, Rong Xiang, Lin Wei
Software Mentions: 8
Published: almost 6 years ago

10.18632/aging.203266

Clinical significance and prognostic role of an immune-related gene signature in gastric adenocarcinoma
Cited by: 4
Author(s): Rui Mao, Kehao Liu, Nana Zhao, Pengsen Guo, Yingxin Wu, Zheng Wang, Yanjun Liu, Tongtong Zhang
Software Mentions: 8
Published: about 5 years ago

10.1186/s12864-018-4649-2

Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturation
Cited by: 15
Author(s): Zhisong He, Qianhui Yu
Software Mentions: 8
Published: over 8 years ago

10.1038/s41598-021-85680-x

A 14-gene gemcitabine resistance gene signature is significantly associated with the prognosis of pancreatic cancer patients
Cited by: 9
Author(s): Xing Wei, Xiaochong Zhou, Yun Zhao, Yao He, Zhen Weng, Chunfang Xu
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-48746-5

Gene Expression Predicts Histological Severity and Reveals Distinct Molecular Profiles of Nonalcoholic Fatty Liver Disease
Cited by: 93
Author(s): Stephen A. Hoang, Abdul M. Oseini, Ryan E. Feaver, Banumathi K. Cole, Amon Asgharpour, Robert Vincent, Mohammad Shadab Siddiqui, Mark Lawson, Nathan Day, Justin M. Taylor, Brian R. Wamhoff, Faridoddin Mirshahi, Melissa J. Contos, Michael O. Idowu, Arun J. Sanyal
Software Mentions: 8
Published: about 7 years ago

10.1038/srep32976

Disease-specific classification using deconvoluted whole blood gene expression
Cited by: 17
Author(s): Li Wang, William K. Oh, Jun Zhu
Software Mentions: 8
Published: about 10 years ago

10.1126/sciadv.abd3311

Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
Cited by: 64
Author(s): Gerda Kildisiute, Waleed M. Kholosy, Matthew D. Young, Kenny Roberts, Rasa Elmentaite, Sander R. van Hooff, Clarissa N Pacyna, Eleonora Khabirova, Alice Piapi, Christine Thevanesan, Eva Bugallo-Blanco, Christina Burke, Lira Mamanova, KM Keller, Karin Langenberg-Ververgaert, Philip Lijnzaad, Thanasis Margaritis, Frank C. P. Holstege, Michelle L. Tas, Marc H. W. A. Wijnen, Max M. van Noesel, Ignacio del Valle, Giuseppe Barone, Reinier van der Linden, Catriona Duncan, John Anderson, John C. Achermann, Muzlifah Haniffa, Sarah A. Teichmann, Dyanne Rampling, Neil J. Sebire, Xiaoling He, Ronald R. de Krijger, Roger A. Barker, Kerstin B. Meyer, Ömer Bayraktar, Karin Straathof, Jan J. Molenaar, Sam Behjati
Software Mentions: 8
Published: over 5 years ago

10.1007/s00259-020-04864-1

A CT-based radiomics model to detect prostate cancer lymph node metastases in PSMA radioguided surgery patients
Cited by: 25
Author(s): Jan C. Peeken, Mohamed A. Shouman, Markus Kroenke, Isabel Rauscher, Tobias Maurer, Jürgen E. Gschwend, Matthias Eiber, Stephanie E. Combs
Software Mentions: 8
Published: over 6 years ago

10.3389/fimmu.2017.00690

Changes in Host Immune–Endocrine Relationships during Tuberculosis Treatment in Patients with Cured and Failed Treatment Outcomes
Cited by: 7
Author(s): Léanie Kleynhans, Sheena Ruzive, Lizaan Ehlers, Lani Thiart, Novel N. Chegou, Magda Conradie, Magdalena Kriel, Kim Stanley, Gian D. van der Spuy, Martin Kidd, Paul D. van Helden, Gerhard Walzl, Katharina Ronacher
Software Mentions: 8
Published: over 9 years ago

10.3390/ani11071940

Prevalence of BRD-Related Viral Pathogens in the Upper Respiratory Tract of Swiss Veal Calves
Cited by: 12
Author(s): Edgar Studer, Lutz Schönecker, Mireille Meylan, Dimitri Stucki, Ronald Dijkman, Melle Holwerda, Anna N. Glaus, Jens Becker
Software Mentions: 8
Published: over 5 years ago

10.7717/peerj.11599

A seven-lncRNA signature for predicting Ewing’s sarcoma
Cited by: 8
Author(s): Zhihui Chen, Xinyu Wang, Guozhu Wang, Bin Xiao, Zhe Ma, Hongliang Huo, Weiwei Li
Software Mentions: 8
Published: over 5 years ago

10.3389/fmed.2021.644053

Comprehensive Analysis Identifies Potential Ferroptosis-Associated mRNA Therapeutic Targets in Ovarian Cancer
Cited by: 16
Author(s): Jiyan Zhang, Jie Xi, Ping Huang, Saitian Zeng
Software Mentions: 8
Published: over 5 years ago

10.3389/fnhum.2020.614979

The Error-Related Negativity Predicts Self-Control Failures in Daily Life
Cited by: 12
Author(s): Rebecca Overmeyer, Julia Berghäuser, Raoul Dieterich, Max Wolff, Thomas Goschke, Tanja Endraß
Software Mentions: 8
Published: over 5 years ago

10.1007/s12282-020-01191-z

Immune-related gene data-based molecular subtyping related to the prognosis of breast cancer patients
Cited by: 1
Author(s): Guoyu Mu, Hong Ji, Hui He, Hongjiang Wang
Software Mentions: 8
Published: almost 6 years ago

10.3389/fnhum.2019.00181

Ability-Based Emotional Intelligence Is Associated With Greater Cardiac Vagal Control and Reactivity
Cited by: 3
Author(s): John R. Vanuk, Anna Alkozei, Adam C. Raikes, John J. B. Allen, William D.S. Killgore
Software Mentions: 8
Published: over 7 years ago

10.1186/s12885-021-08012-2

Identification of a five-immune gene model as an independent prognostic factor in hepatocellular carcinoma
Cited by: 5
Author(s): Haitao Chen, Yueying Li, Shu–Yuan Xiao, Jingyi Guo
Software Mentions: 8
Published: over 5 years ago

10.1186/s41512-021-00103-9

The development and validation of prognostic models for overall survival in the presence of missing data in the training dataset: a strategy with a detailed example
Cited by: 1
Author(s): Kara-Louise Royle, David A. Cairns
Software Mentions: 8
Published: about 5 years ago

10.1111/jcmm.15601

Novel gene signatures for prognosis prediction in ovarian cancer
Cited by: 25
Author(s): Mingyang Bao, Lihua Zhang, Yue‐Qing Hu
Software Mentions: 8
Published: about 6 years ago

10.1186/s12885-021-08447-7

Identification of a tumor microenvironment-related seven-gene signature for predicting prognosis in bladder cancer
Cited by: 17
Author(s): Wang Zhi, Lei Tu, Minfeng Chen, Shiyu Tong
Software Mentions: 8
Published: over 5 years ago

10.3389/fgene.2020.00805

Prognostic lncRNA, miRNA, and mRNA Signatures in Papillary Thyroid Carcinoma
Cited by: 8
Author(s): Kun Wang, Jing Xu, Lu Zhao, Shiyang Liu, Chen‐Guang Liu, Lin Zhang
Software Mentions: 8
Published: about 6 years ago

10.1016/j.compbiomed.2021.104556

NFnetFu: A novel workflow for microbiome data fusion
Cited by: 3
Author(s): Vartika Bisht, Animesh Acharjee, Georgios V. Gkoutos
Software Mentions: 8
Published: about 5 years ago

10.1007/s10278-018-0154-z

Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers
Cited by: 5
Author(s): Dmytro Lituiev, Hari Trivedi, Maryam Panahiazar, Beau Norgeot, Youngho Seo, Benjamin L. Franc, Roy Harnish, Michael Kawczynski, Dexter Hadley
Software Mentions: 8
Published: almost 8 years ago

10.3390/diagnostics11061079

Identification of Diagnostic Biomarkers and Their Correlation with Immune Infiltration in Age-Related Macular Degeneration
Cited by: 3
Author(s): Yuyang Zeng, Xiujuan Yin, Changzheng Chen, Yiqiao Xing
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pgen.1006995

Environmental perturbations lead to extensive directional shifts in RNA processing
Cited by: 24
Author(s): Allison L. Richards, Donovan Watza, Anthony Findley, Adnan Alazizi, Xiaoquan Wen, Athma A. Pai, Roger Piqué-Regi, Francesca Luca
Software Mentions: 8
Published: almost 9 years ago

10.1155/2020/5843874

Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney
Cited by: 1
Author(s): Xiaoqing Wang, Xiangyu Wu, Tianyou Li, Meng Cui, Lichao Zhu, Gang Wang, Feng Guo
Software Mentions: 8
Published: about 6 years ago

10.1186/s13148-020-00931-4

TWIST1 DNA methylation is a cell marker of airway and parenchymal lung fibroblasts that are differentially methylated in asthma
Cited by: 7
Author(s): Rachel L. Clifford, Chen Xi Yang, Nick Fishbane, J. Patel, Julia L. MacIsaac, Lisa M. McEwen, Sean May, Marcos Castellanos-Uribe, Parameswaran Nair, Ma’en Obeidat, Michæl S. Kobor, Alan J. Knox, Tillie-Louise Hackett
Software Mentions: 8
Published: about 6 years ago

10.7150/jca.49175

Biological functions and prognostic value of RNA Binding Proteins in clear cell Renal Cell Carcinoma
Cited by: 6
Author(s): Zhenpeng Zhu, Anbang He, Lanruo Lin, Chunru Xu, Tianyu Cai, Lin Jian
Software Mentions: 8
Published: almost 7 years ago

10.7150/jca.49266

Establishment of the Prognostic Index Reflecting Tumor Immune Microenvironment of Lung Adenocarcinoma Based on Metabolism-Related Genes
Cited by: 13
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 8
Published: almost 7 years ago

10.3389/fmolb.2021.661661

A Three-Gene Peripheral Blood Potential Diagnosis Signature for Acute Rejection in Renal Transplantation
Cited by: 2
Author(s): Yicun Wang, Di Zhang, Xiaosong Hu
Software Mentions: 8
Published: over 5 years ago

10.18632/aging.103947

Autophagy-related long noncoding RNAs can predict prognosis in patients with bladder cancer
Cited by: 11
Author(s): Cong Lai, Zhenyu Wu, Juan Shi, Kaiwen Li, Jiamin Zhu, Zhenhong Chen, Cheng Liu, Kecheng Xu
Software Mentions: 8
Published: almost 6 years ago

10.1017/S0950268820000758

Development and external-validation of a nomogram for predicting the survival of hospitalised HIV/AIDS patients based on a large study cohort in western China
Cited by: 5
Author(s): Zongxiang Yuan, Bo Zhou, Sirun Meng, Jie Jiang, Shenghong Huang, Xiang Lu, Nianning Wu, Zhongkui Xie, Jianning Deng, X. Chen, J. Liu, J. Zhang, Fengyao Wu, Hao Liang, L. Ye
Software Mentions: 8
Published: almost 7 years ago

10.1172/jci.insight.138751

In utero human intestine harbors unique metabolome, including bacterial metabolites
Cited by: 27
Author(s): Yujia Li, Jessica Toothaker, Shira Ben-Simon, Lital Ozeri, Ron Schweitzer, Blake McCourt, Collin C. McCourt, Lael Werner, Scott B. Snapper, Dror S. Shouval, Soliman Khatib, Omry Koren, Sameer Agnihorti, George C. Tseng, Liza Konnikova
Software Mentions: 8
Published: almost 6 years ago

10.1136/gutjnl-2019-318343

A blood-based prognostic biomarker in IBD
Cited by: 125
Author(s): Daniele Biasci, James C. Lee, Nurulamin M Noor, Diana R Pombal, Monica Hou, Nina Lewis, Tariq Ahmad, Ailsa Hart, Miles Parkes, Eoín McKinney, Paul Lyons, Kenneth G. C. Smith
Software Mentions: 7
Published: over 7 years ago

10.1136/bmj.m3339

Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score
Cited by: 699
Author(s): Stephen R Knight, Antonia Ho, Riinu Pius, Iain Buchan, Gail Carson, Thomas M Drake, Jake Dunning, Cameron J Fairfield, Carrol Gamble, Christopher Green, Gupta Rk, Sophie Halpin, Hayley Hardwick, Karl Holden, Peter Horby, Clare Jackson, Kenneth A McLean, Laura Merson, Jonathan S Nguyen‐Van‐Tam, Lisa Norman, Mahdad Noursadeghi, Piero Olliaro, Mark G Pritchard, Clark D Russell, Catherine Shaw, Aziz Sheikh, Tom Solomon, Cathie Sudlow, Olivia Swann, Lance Turtle, Peter Openshaw, J Kenneth Baillie, Malcolm G Semple, Annemarie B Docherty, Ewen M Harrison
Software Mentions: 7
Published: about 6 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.104122

Prognostic roles of metabolic reprogramming-associated genes in patients with hepatocellular carcinoma
Cited by: 12
Author(s): Lijuan Cui, Xue Hai, Zhitong Wen, Zhihong Lu, Yunfeng Liu, Yi Zhang
Software Mentions: 7
Published: almost 6 years ago

10.1093/gigascience/giaa162

Lilikoi V2.0: a deep learning–enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data
Cited by: 10
Author(s): Xinying Fang, Yu Liu, Zhijie Ren, Yuheng Du, Qizhao Huang, Lana X. Garmire
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2019.00185

Myometrial Transcriptional Signatures of Human Parturition
Cited by: 36
Author(s): Zachary Stanfield, Pei F. Lai, Kaiyu Lei, Mark R. Johnson, Andrew M. Blanks, Roberto Romero, Mark R. Chance, Sam Mesiano, Mehmet Koyutürk
Software Mentions: 7
Published: over 7 years ago

10.3389/fgene.2021.710485

Evaluations of Genomic Prediction and Identification of New Loci for Resistance to Stripe Rust Disease in Wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Vipin Tomar, G. S. Dhillon, Daljit Singh, Ravi P. Singh, Jesse Poland, Anis Ahmad Chaudhary, Pradeep Kumar Bhati, Arun Kumar Joshi, Uttam Kumar
Software Mentions: 7
Published: about 5 years ago

10.3390/cancers13184559

Machine Learning Incorporating Host Factors for Predicting Survival in Head and Neck Squamous Cell Carcinoma Patients
Cited by: 5
Author(s): Han Yu, Sung Jun, Mark Farrugia, Austin J. Iovoli, Kimberly Wooten, Vishal Gupta, Ryan McSpadden, Moni Abraham Kuriakose, Michael R. Markiewicz, Justin Chan, Wesley L. Hicks, Mary E. Platek, Anurag Singh
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2019.00579

A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
Cited by: 107
Author(s): Yi‐Hui Zhou, Paul J. Gallins
Software Mentions: 7
Published: over 7 years ago

10.3389/fgene.2021.739470

Construction on of a Ferroptosis-Related lncRNA-Based Model to Improve the Prognostic Evaluation of Gastric Cancer Patients Based on Bioinformatics
Cited by: 19
Author(s): Jing Pan, Xinyue Zhang, Xuedong Fang, Zhuoyuan Xin
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pcbi.1008720

Impact of between-tissue differences on pan-cancer predictions of drug sensitivity
Cited by: 4
Author(s): John P. Lloyd, Matthew B. Soellner, Sofía D. Merajver, Jun Z. Li
Software Mentions: 7
Published: over 5 years ago

10.3390/genes12060799

ALDH2 p.E504K Variation and Sex Are Major Factors Associated with Current and Quitting Alcohol Drinking in Japanese Oldest Old
Cited by: 4
Author(s): Takashi Sasaki, Yoshinori Nishimoto, Takumi Hirata, Yukiko Abe, Toru Takebayashi, Yasumichi Arai
Software Mentions: 7
Published: over 5 years ago

10.3390/genes10100778

DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning
Cited by: 48
Author(s): Biao Liu, Yulu Liu, Xingxin Pan, Mengyao Li, Shuang Yang, Shuai Cheng Li
Software Mentions: 7
Published: about 7 years ago

10.3389/fgene.2019.00662

Cascaded Wx: A Novel Prognosis-Related Feature Selection Framework in Human Lung Adenocarcinoma Transcriptomes
Cited by: 6
Author(s): Bonggun Shin, Sung Soo Park, Ji Hyung Hong, Ho Jung An, Sang Hoon Chun, Kilsoo Kang, Young Ho Ahn, Yoon Ho Ko, Keunsoo Kang
Software Mentions: 7
Published: about 7 years ago

10.3389/fgene.2019.00774

A Hybrid Ensemble Approach for Identifying Robust Differentially Methylated Loci in Pan-Cancers
Cited by: 3
Author(s): Qi Tian, Jianxiao Zou, Yuan Fang, Zhongli Yu, Jie Tang, Ying Song, Shicai Fan
Software Mentions: 7
Published: about 7 years ago

10.1186/s12874-019-0681-4

Machine learning in medicine: a practical introduction
Cited by: 526
Author(s): Jenni A. M. Sidey-Gibbons, Chris Sidey‐Gibbons
Software Mentions: 7
Published: over 7 years ago

10.3389/fendo.2021.712513

Construction of a Prognostic Risk Prediction Model for Obesity Combined With Breast Cancer
Cited by: 1
Author(s): Na Sun, Dandan Ma, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Fei Han, Yi Zhang, Xiaowei Qi
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0215565

A robust data-driven genomic signature for idiopathic pulmonary fibrosis with applications for translational model selection
Cited by: 6
Author(s): Ron Ammar, Pitchumani Sivakumar, Gábor Járai, John Ryan Thompson
Software Mentions: 7
Published: over 7 years ago

10.18632/aging.102506

Reactive oxygen species metabolism-based prediction model and drug for patients with recurrent glioblastoma
Cited by: 7
Author(s): Nian Tan, Jianwei Liu, Ping Li, Zhaohao Sun, Jianming Pan, Wei Zhao
Software Mentions: 7
Published: almost 7 years ago

10.34133/2020/4216373

Semantic Segmentation of Sorghum Using Hyperspectral Data Identifies Genetic Associations
Cited by: 24
Author(s): Chenyong Miao, Alejandro Pages, Zheng Xu, Eric Rodene, Jinliang Yang, James C. Schnable
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12859-021-04011-z

Empowering individual trait prediction using interactions for precision medicine
Cited by: 4
Author(s): Damian Gola, Inke R. König
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2021.626961

Identification of Stemness Characteristics Associated With the Immune Microenvironment and Prognosis in Gastric Cancer
Cited by: 15
Author(s): Deli Mao, Zhijun Zhou, Shenglei Song, Dongsheng Li, Yulong He, Zhewei Wei, Changhua Zhang
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.542140

Identification of Immune-Related lncRNA Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer
Cited by: 19
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Jian‐Ge Wang, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 7
Published: over 5 years ago

10.3389/fcell.2021.618313

Long Non-coding RNA Expression Patterns in Stomach Adenocarcinoma Serve as an Indicator of Tumor Mutation Burden and Are Associated With Tumor-Infiltrating Lymphocytes and Microsatellite Instability
Cited by: 6
Author(s): Dongdong Yang, Jianan Yu, Bing Han, Yue Sun, Steven Mo, Jing Hu
Software Mentions: 7
Published: over 5 years ago

10.1155/2021/9918498

Integrated Analysis of Weighted Gene Coexpression Network Analysis Identifying Six Genes as Novel Biomarkers for Alzheimer’s Disease
Cited by: 15
Author(s): Tingting Zhang, Nanyang Liu, Wei Wei, Zhen Zhang, Hao Li
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.682261

Immunity-Related Gene Signature Identifies Subtypes Benefitting From Adjuvant Chemotherapy or Potentially Responding to PD1/PD-L1 Blockage in Pancreatic Cancer
Cited by: 3
Author(s): Qian Hao, Hongzhe Li, Junjie Xie, Xiang Lü, Fanlu Li, Weishen Wang, Xiaomei Tang, Minmin Shi, Longyang Jiang, Hongwei Li, Hao Chen, Chenghong Peng, Zhiwei Xu, Xiaxing Deng, Baiyong Shen
Software Mentions: 7
Published: over 5 years ago

10.3389/fcell.2021.658642

HNRNPA2B1 Affects the Prognosis of Esophageal Cancer by Regulating the miR-17-92 Cluster
Cited by: 21
Author(s): Kexin Li, Jiongyu Chen, Xiaoying Lou, Yiling Li, Benheng Qian, Danfei Xu, Yue Wu, Shaohui Ma, Donghong Zhang, Wei Cui
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.603717

Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic Adenoma
Cited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: over 5 years ago

10.1186/s12920-021-01081-z

Identification and validation of a novel immune-related signature associated with macrophages and CD8 T cell infiltration predicting overall survival for hepatocellular carcinoma
Cited by: 2
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.622198

Succinylation Regulators Promote Clear Cell Renal Cell Carcinoma by Immune Regulation and RNA N6-Methyladenosine Methylation
Cited by: 11
Author(s): Wenqing Lü, Xiaofang Che, Xiujuan Qu, Chunlei Zheng, Xianghong Yang, Bowen Bao, Zhi Li, Duo Wang, Yue Jin, Yizhe Wang, Jiawen Xiao, Jianfei Qi, Yunpeng Liu
Software Mentions: 7
Published: over 5 years ago

10.1186/s12967-020-02505-7

ANDC: an early warning score to predict mortality risk for patients with Coronavirus Disease 2019
Cited by: 44
Author(s): Zhihong Weng, Qiaosen Chen, Sumeng Li, Huadong Li, Qian Zhang, Sihong Lu, Ling Wu, Leiqun Xiong, Bobin Mi, Di Liu, Mengji Lu, Dongliang Yang, Hongbo Jiang, Shuang Zheng, Xin Zheng
Software Mentions: 7
Published: about 6 years ago

10.1038/s41598-020-75573-w

Development of a novel immune-related genes prognostic signature for osteosarcoma
Cited by: 17
Author(s): Zhi-Xi Wu, Yajun Deng, Guangzhi Zhang, Enhui Ren, Wenhua Yuan, Qiqi Xie
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.11968

Development and validation of a novel survival model for acute myeloid leukemia based on autophagy-related genes
Cited by: 7
Author(s): Li Huang, Lier Lin, Xing Fu, Can Meng
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-020-75473-z

Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
Cited by: 16
Author(s): Satoru Kawakita, Jennifer L. Beaumont, Vadim Jucaud, Matthew J Everly
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pone.0164230

Blood Plasma-Derived Anti-Glycan Antibodies to Sialylated and Sulfated Glycans Identify Ovarian Cancer Patients
Cited by: 17
Author(s): Tatiana Pochechueva, Alexander Chinarev, Andreas Schoetzau, André Fedier, Nicolai V. Bovin, Neville F. Hacker, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 7
Published: almost 10 years ago

10.3389/fcell.2021.673827

Expression of Lipid-Metabolism Genes Is Correlated With Immune Microenvironment and Predicts Prognosis in Osteosarcoma
Cited by: 33
Author(s): Qian-Nan Hu, Ting Lei, Yihe Hu, Pengfei Lei
Software Mentions: 7
Published: over 5 years ago

10.1002/mp.12967

Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers
Cited by: 188
Author(s): Timo M. Deist, Frank J. W. M. Dankers, Gilmer Valdés, Robin Wijsman, I‐Chow Hsu, Cary Oberije, Tim Lustberg, Johan van Soest, Frank Hoebers, Arthur Jochems, Issam El Naqa, Leonard Wee, Olivier Morin, David R. Raleigh, Wouter Bots, Johannes H.A.M. Kaanders, J. Belderbos, Margriet Kwint, Timothy D. Solberg, R. Monshouwer, Johan Bussink, André Dekker, Philippe Lambin
Software Mentions: 7
Published: over 8 years ago

10.7717/peerj.9602

The role of m6A-related genes in the prognosis and immune microenvironment of pancreatic adenocarcinoma
Cited by: 58
Author(s): Rong Tang, Yiyin Zhang, Chen Liang, Jin Xu, Qingcai Meng, Jie Hua, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 7
Published: about 6 years ago

10.3389/fneur.2021.580440

Machine Learning Models on ADC Features to Assess Brain Changes of Children With Pierre Robin Sequence
Cited by: 0
Author(s): Ying Wang, Feng Yang, Meijiao Zhu, Ming Yang
Software Mentions: 7
Published: over 5 years ago

10.3389/fnins.2020.00289

MVPA-Light: A Classification and Regression Toolbox for Multi-Dimensional Data
Cited by: 96
Author(s): Matthias S. Treder
Software Mentions: 7
Published: over 6 years ago

10.1007/s10994-019-05848-5

An evaluation of machine-learning for predicting phenotype: studies in yeast, rice, and wheat
Cited by: 79
Author(s): Nastasiya F. Grinberg, Oghenejokpeme I. Orhobor, Ross D. King
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-020-63186-2

Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfare
Cited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: over 6 years ago

10.1002/cam4.4189

Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
Cited by: 7
Author(s): Shuang Shen, Xin Chen, Xiaochi Hu, Jinlong Huo, Libo Luo, Xuezhi Zhou
Software Mentions: 7
Published: about 5 years ago

10.7717/peerj.11733

Identification of a circadian gene signature that predicts overall survival in lung adenocarcinoma
Cited by: 2
Author(s): Xinliang Gao, Mingbo Tang, Suyan Tian, Jialin Li, Wei Liu
Software Mentions: 7
Published: about 5 years ago

10.3389/fmolb.2020.611626

Identification of a Five-Autophagy-Related-lncRNA Signature as a Novel Prognostic Biomarker for Hepatocellular Carcinoma
Cited by: 30
Author(s): Xiaoyu Deng, Qinghua Bi, Shihan Chen, Xianhua Chen, Shuhui Li, Zhaoyang Zhong, Guo Wei, Xiaohui Li, Youcai Deng, Yang Yao
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-45989-0

Machine learning approaches to predict lupus disease activity from gene expression data
Cited by: 48
Author(s): Brian Kegerreis, Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Adam C. Labonte, Chen Zeng, Nathaniel Stearrett, Keith A. Crandall, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0185380

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits
Cited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: about 9 years ago

10.1038/s41598-018-23584-z

Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variables
Cited by: 48
Author(s): Raquel Iniesta, Karen Hodgson, Daniel Ståhl, Karim Malki, Wolfgang Maier, Marcella Rietschel, Ole Mors, Joanna Hauser, Neven Henigsberg, Mojca Zvezdana Dernovšek, Daniel Souery, Richard Dobson, Katherine J. Aitchison, Anne Farmer, Peter McGuffin, Cathryn M. Lewis, Rudolf Uher
Software Mentions: 7
Published: over 8 years ago

10.3389/fnagi.2021.605970

Immune Profiling of Parkinson’s Disease Revealed Its Association With a Subset of Infiltrating Cells and Signature Genes
Cited by: 12
Author(s): Xi Zhang, Zhihua Shao, Sutong Xu, Qiulu Liu, Chenming Liu, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-019-50260-7

Plasma metabolites associated with homeostatic model assessment of insulin resistance: metabolite-model design and external validation
Cited by: 5
Author(s): Pablo Hernández‐Alonso, Jesús García‐Gavilán, Lucía Camacho-Barcia, Anders Sjödin, Thorsten Hansen, Jo Harrold, Jordi Salas‐Salvadó, Jason C.G. Halford, Sı́lvia Canudas, Mònica Bulló
Software Mentions: 7
Published: about 7 years ago

10.3389/fmolb.2021.645845

A Novel Defined Risk Signature of the Ferroptosis-Related Genes for Predicting the Prognosis of Ovarian Cancer
Cited by: 23
Author(s): Ying Yang, Qinjin Dai, Shuhong Li, Jie He, Hongbo Qi
Software Mentions: 7
Published: over 5 years ago

10.1186/s12935-020-01429-y

Establishment of the prognostic index of lung squamous cell carcinoma based on immunogenomic landscape analysis
Cited by: 11
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 7
Published: about 6 years ago

10.3389/fmolb.2020.587822

A Novel Prognostic Model of Endometrial Carcinoma Based on Clinical Variables and Oncogenomic Gene Signature
Cited by: 5
Author(s): Fang Deng, Jing Mu, Changzheng Qu, Fang Yang, Xing Liu, Xiaomin Zhang, Xiaoning Peng
Software Mentions: 7
Published: over 5 years ago

10.1038/srep28657

Pubertal development in healthy children is mirrored by DNA methylation patterns in peripheral blood
Cited by: 57
Author(s): Kristian Almstrup, Marie Johansen, Alexander Busch, Casper P Hagen, John Nielsen, Jørgen Holm Petersen, Anders Juul
Software Mentions: 7
Published: over 10 years ago

10.1038/s41598-019-53843-6

Monocytes affect bone mineral density in pre- and postmenopausal women through ribonucleoprotein complex biogenesis by integrative bioinformatics analysis
Cited by: 8
Author(s): Kang-Wen Xiao, Jiali Li, Zhao-Yi Zeng, Zhibo Liu, Zhiqiang Hou, Xin Yan, Lin Cai
Software Mentions: 7
Published: almost 7 years ago

10.7717/peerj.1621

Cross-platform normalization of microarray and RNA-seq data for machine learning applications
Cited by: 71
Author(s): Jeffrey Thompson, Jie Tan, Casey S. Greene
Software Mentions: 7
Published: over 10 years ago

10.1186/s12935-021-02050-3

Constructe a novel 5 hypoxia genes signature for cervical cancer
Cited by: 13
Author(s): Yang Yang, Yaling Li, Ruiqun Qi, Lan Zhang
Software Mentions: 7
Published: over 5 years ago

10.1186/s40813-021-00219-w

Using nontargeted LC-MS metabolomics to identify the Association of Biomarkers in pig feces with feed efficiency
Cited by: 10
Author(s): Jie Wu, Yong Ye, Jianping Quan, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Qian Geng, Cineng Xu, Linjun Hong, Zheng Xu, Enqin Zheng, Guangyan Cai, Zhenfang Wu, Jie Yang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12935-020-01216-9

Integrated nomogram based on five stage-related genes and TNM stage to predict 1-year recurrence in hepatocellular carcinoma
Cited by: 14
Author(s): Haohan Liu, Yongcong Yan, Ruibing Chen, Mengdi Zhu, Jianhong Lin, Chuanchao He, Bingchao Shi, Ke Wen, Kai Mao, Zhiyu Xiao
Software Mentions: 7
Published: over 6 years ago

10.1038/sdata.2018.21

Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich’s ataxia patients
Cited by: 22
Author(s): Marta Seco-Cervera, Daymé González-Rodríguez, José Santiago Ibáñez-Cabellos, Lorena Peiró-Chova, Federico V. Pallardó, José Luis García-Giménez
Software Mentions: 7
Published: over 8 years ago

10.3389/fcell.2021.726716

Identification of an Immune-Related Long Noncoding RNA Pairs Model to Predict Survival and Immune Features in Gastric Cancer
Cited by: 8
Author(s): Shenglei Song, Shuhao Liu, Zhewei Wei, Xinghan Jin, Deli Mao, Yulong He, Bo Li, Changhua Zhang
Software Mentions: 7
Published: about 5 years ago

10.1038/s41597-019-0207-2

Compendiums of cancer transcriptomes for machine learning applications
Cited by: 13
Author(s): Su Bin Lim, Swee Jin Tan, Wan-Teck Lim, Chwee Teck Lim
Software Mentions: 7
Published: almost 7 years ago

10.3389/fimmu.2021.639634

Development and Validation of a Novel Prognostic Model for Acute Myeloid Leukemia Based on Immune-Related Genes
Cited by: 10
Author(s): Ran Li, Zuoyou Ding, Peng Jin, Shishuang Wu, Ge Jiang, Rufang Xiang, Wenfang Wang, Zhen Jin, Xiaoyang Li, Kai Xue, Xiaolu Wu, Junmin Li
Software Mentions: 7
Published: over 5 years ago

Projects: cran: glmnet

Science Score: 100/100

Bonuses:

Papers Mentioning glmnet 1,607