Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1126/sciadv.abd3311

https://doi.org/10.1126/sciadv.abd3311

Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell

Cited by: 64
Author(s): Gerda Kildisiute, Waleed M. Kholosy, Matthew D. Young, Kenny Roberts, Rasa Elmentaite, Sander R. van Hooff, Clarissa N Pacyna, Eleonora Khabirova, Alice Piapi, Christine Thevanesan, Eva Bugallo-Blanco, Christina Burke, Lira Mamanova, KM Keller, Karin Langenberg-Ververgaert, Philip Lijnzaad, Thanasis Margaritis, Frank C. P. Holstege, Michelle L. Tas, Marc H. W. A. Wijnen, Max M. van Noesel, Ignacio del Valle, Giuseppe Barone, Reinier van der Linden, Catriona Duncan, John Anderson, John C. Achermann, Muzlifah Haniffa, Sarah A. Teichmann, Dyanne Rampling, Neil J. Sebire, Xiaoling He, Ronald R. de Krijger, Roger A. Barker, Kerstin B. Meyer, Ömer Bayraktar, Karin Straathof, Jan J. Molenaar, Sam Behjati
Published: almost 4 years ago

Software Mentions 8

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
Papers that mentioned: 79
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: SoupX
Single Cell mRNA Soup eXterminator
Papers that mentioned: 17
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: velocyto
RNA velocity analysis for single cell RNA-seq data
Papers that mentioned: 25