Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.1621

https://doi.org/10.7717/peerj.1621

Cross-platform normalization of microarray and RNA-seq data for machine learning applications

Cited by: 71
Author(s): Jeffrey Thompson, Jie Tan, Casey S. Greene
Published: almost 9 years ago

Software Mentions 7

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
bioconductor: quantro
A test for when to use quantile normalization
Papers that mentioned: 6
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: sdcMicro
Statistical Disclosure Control Methods for Anonymization of Data and Risk Estimation
Papers that mentioned: 4
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607