cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.3390/jcm7120567

Systematic Review of Variations in Hyperthermic Intraperitoneal Chemotherapy (HIPEC) for Peritoneal Metastasis from Colorectal Cancer
Cited by: 57
Author(s): Can Yurttas, Giulia Hoffmann, Alexander Tolios, Sebastian P. Haen, Matthias Schwab, Ingmar Königsrainer, Alfred Königsrainer, Stefan Beckert, Markus Löffler
Software Mentions: 7
Published: almost 6 years ago

10.3390/jcm10173971

A Target for Increased Mortality Risk in Critically Ill Patients: The Concept of Perpetuity
Cited by: 1
Author(s): Jarrod Mosier, Julia M. Fisher, Cameron Hypes, Edward J. Bedrick, Elizabeth Salvagio Campbell, Karen Lutrick, Charles B. Cairns
Software Mentions: 7
Published: about 3 years ago

10.3390/jcm8081128

NEWS2 is Superior to qSOFA in Detecting Sepsis with Organ Dysfunction in the Emergency Department
Cited by: 60
Author(s): Lisa Mellhammar, Adam Linder, Jonas Tverring, Bértil Christensson, John H. Boyd, Parham Sendi, Per Åkesson, Fredrik Kahn
Software Mentions: 7
Published: over 5 years ago

10.1161/CIRCULATIONAHA.117.028084

Direct Comparison of Cardiac Myosin-Binding Protein C With Cardiac Troponins for the Early Diagnosis of Acute Myocardial Infarction
Cited by: 57
Author(s): Thomas E Kaier, Raphael Twerenbold, Christian Puelacher, Jack Marjot, Nazia Imambaccus, Jasper Boeddinghaus, Thomas Nestelberger, Patrick Badertscher, Zaid Sabti, María Rubini Giménez, Karin Wildi, Petra Hillinger, Karin Grimm, Sarah Loeffel, Samyut Shrestha, Dayana Flores, Janosch Cupa, Nikola Kozhuharov, Òscar Miró, Francisco Javier Martín‐Sánchez, Beata Morawiec, Katharina Rentsch, Jens Lohrmann, Wanda Kloos, Stefan Oßwald, Tobias Reichlin, Ekkehard Weber, Michael Marber, Christian Müeller
Software Mentions: 7
Published: about 7 years ago

10.7717/peerj.7233

An artificial-vision- and statistical-learning-based method for studying the biodegradation of type I collagen scaffolds in bone regeneration systems
Cited by: 9
Author(s): Y. Robles-Bykbaev, Salvador Naya, Silvia Díaz‐Prado, D. Calle-Lopez, Vladimir Robles-Bykbaev, Luis Garzón, Clara Sanjurjo‐Rodríguez, Javier Tarrío-Saavedra
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-70967-2

Transcriptomics uncovers substantial variability associated with alterations in manufacturing processes of macrophage cell therapy products
Cited by: 14
Author(s): Olga L. Gurvich, Katja A. Puttonen, Aubrey Bailey, Anssi Kailaanmäki, Vita Skirdenko, Minna Sivonen, Sanna Pietikäinen, Nigel R. Parker, Seppo Ylä‐Herttuala, Tuija Kekarainen
Software Mentions: 7
Published: over 4 years ago

10.18632/aging.202490

Long non-coding RNA TP73-AS1 is a potential immune related prognostic biomarker for glioma
Cited by: 8
Author(s): Bo Zhang, Qinglin Li, Bin Wu, Shuyuan Zhang, Liwen Liu, Kai Jin, Sheng Li, Kai Li, Zeng Wang, Yi Lu, Xiaofeng Liang, Chao Sun
Software Mentions: 7
Published: almost 4 years ago

10.1002/ece3.6731

Microgeographic local adaptation and ecotype distributions: The role of selective processes on early life‐history traits in sympatric, ecologically divergent Symphonia populations
Cited by: 2
Author(s): Niklas Tysklind, Marie‐Pierre Étienne, Caroline Scotti‐Saintagne, Alexandra Tinaut, Maxime Casalis, Valérie Troispoux, Saint‐Omer Cazal, Louise Brousseau, Bruno Ferry, Ivan Scotti
Software Mentions: 7
Published: about 4 years ago

10.3389/fonc.2021.584884

Tumor Microenvironmental Competitive Endogenous RNA Network and Immune Cells Act as Robust Prognostic Predictor of Acute Myeloid Leukemia
Cited by: 16
Author(s): Yuanrong Cheng, Xiaoran Wang, Peiyan Qi, Chengxiu Liu, Shoubi Wang, Qi Wan, Yurun Liu, Yangfeng Su, Lin Jin, Ying Liu, Chaoyang Li, Xuan Sang, Yang Liu, Chang Liu, Hucheng Duan, Zhichong Wang
Software Mentions: 7
Published: over 3 years ago

10.1186/s12915-021-01062-9

Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathway
Cited by: 12
Author(s): Alfire Sidik, Groves Dixon, Desirè M. Buckley, Hannah G. Kirby, Suwan Sun, Johann K. Eberhart
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2021.694680

Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients
Cited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0233309

Short Report: Asymptomatic Zika virus infections with low viral loads not likely to establish transmission in New Orleans Aedes populations
Cited by: 0
Author(s): Matthew J. Ward, Brendan H Carter, Christine Walsh, Joshua Yukich, Dawn M. Wesson, Rebecca C. Christofferson
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-71173-w

Standardized massage interventions as protocols for the induction of psychophysiological relaxation in the laboratory: a block randomized, controlled trial
Cited by: 10
Author(s): Maria Meier, Eva Unternäehrer, Stephanie J. Dimitroff, Annika Benz, Ulrike U. Bentele, Sabine M. Schorpp, Maya Wenzel, Jens C. Pruessner
Software Mentions: 7
Published: about 4 years ago

10.3390/cancers13164087

Prognostic Value of Procalcitonin, C-Reactive Protein, and Lactate Levels in Emergency Evaluation of Cancer Patients with Suspected Infection
Cited by: 5
Author(s): Patrick Chaftari, Aiham Qdaisat, Anne-Marie Chaftari, Julian Maamari, Ziyi Li, Florea Lupu, Issam Raad, Ray Hachem, George A. Calin, Sai Ching Jim Yeung
Software Mentions: 7
Published: over 3 years ago

10.3389/fimmu.2020.01166

Non-sterilizing, Infection-Permissive Vaccination With Inactivated Influenza Virus Vaccine Reshapes Subsequent Virus Infection-Induced Protective Heterosubtypic Immunity From Cellular to Humoral Cross-Reactive Immune Responses
Cited by: 6
Author(s): Angela Choi, Lorena Itatí Ibáñez, Shirin Strohmeier, Florian Krammer, Adolfo Garcı́a-Sastre, Michael Schotsaert
Software Mentions: 7
Published: over 4 years ago

10.1186/s12885-017-3689-3

GRcalculator: an online tool for calculating and mining dose–response data
Cited by: 57
Author(s): Nicholas Clark, Marc Hafner, Michal Kouril, Liz Williams, Jeremy Muhlich, Marcin Pilarczyk, Mario Niepel, Peter K. Sorger, Mario Medvedovic
Software Mentions: 7
Published: about 7 years ago

10.3390/cancers13184710

Virtual Monoenergetic Images of Dual-Energy CT—Impact on Repeatability, Reproducibility, and Classification in Radiomics
Cited by: 10
Author(s): André Euler, Fabian Christopher Laqua, D. Cester, Niklas Lohaus, Thomas Sartoretti, Daniel Pinto dos Santos, Hatem Alkadhi, Bettina Baeßler
Software Mentions: 7
Published: about 3 years ago

10.3390/cancers13174476

Combining APR-246 and HDAC-Inhibitors: A Novel Targeted Treatment Option for Neuroblastoma
Cited by: 8
Author(s): Michael Müller, Lisa Rösch, Sara Najafi, Charlotte Gatzweiler, Johannes Ridinger, Xenia F Gerloff, David Jones, Jochen Baßler, Sina Kreth, Sabine Stainczyk, Karen Frese, Benjamin Meder, Frank Westermann, Till Milde, Heike Peterziel, Olaf Witt, Ina Oehme
Software Mentions: 7
Published: about 3 years ago

10.3389/fimmu.2020.02149

CXCL4 Links Inflammation and Fibrosis by Reprogramming Monocyte-Derived Dendritic Cells in vitro
Cited by: 23
Author(s): Sandra Silva-Cardoso, Weiyang Tao, Chiara Angiolilli, Ana P Lopes, Cornelis P. J. Bekker, Abhinandan Devaprasad, Barbara Giovannone, Jaap van Laar, Marta Cossu, Wioleta Marut, Erik Hack, Rob J. de Boer, Marianne Boes, Timothy R D J Radstake, Aridaman Pandit
Software Mentions: 7
Published: about 4 years ago

10.3389/fmicb.2020.577474

Dietary Emulsifiers Alter Composition and Activity of the Human Gut Microbiota in vitro, Irrespective of Chemical or Natural Emulsifier Origin
Cited by: 25
Author(s): Lisa Miclotte, Kim De Paepe, Leen Rymenans, Chris Callewaert, Jeroen Raes, Andreja Rajković, John Van Camp, Tom Van de Wiele
Software Mentions: 7
Published: about 4 years ago

10.7717/peerj.2574

YUCCAauxin biosynthetic genes are required for Arabidopsis shade avoidance
Cited by: 60
Author(s): Patricia Müller-Moulé, Kazunari Nozue, Melissa L Pytlak, Christine M. Palmer, Michael F. Covington, Andreah D. Wallace, Stacey L. Harmer, Julin Maloof
Software Mentions: 7
Published: about 8 years ago

10.1186/s12915-021-01134-w

Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elements
Cited by: 7
Author(s): Claus‐Peter Stelzer, Julie Blommaert, Ann‐Marie Waldvogel, Maria Pichler, Bette Hecox-Lea, David Welch
Software Mentions: 7
Published: about 3 years ago

10.7717/peerj.11894

Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for glioma
Cited by: 4
Author(s): Yi He, Yihong Chen, Yuxin Tong, Wenyong Long, Qing Liu
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-020-02144-7

1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding
Cited by: 32
Author(s): Toby Wilkinson, Daniel Korir, Moses Ogugo, Robert D. Stewart, Mick Watson, Edith Paxton, John P. Goopy, Christelle Robert
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0250783

Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
Cited by: 12
Author(s): John K. Pearman, Georgia Thomson‐Laing, Jamie Howarth, Marcus J. Vandergoes, L. M. Thompson, Andrew Rees, Susanna A. Wood
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-020-02082-4

Genome-wide studies reveal the essential and opposite roles of ARID1A in controlling human cardiogenesis and neurogenesis from pluripotent stem cells
Cited by: 22
Author(s): Juli Liu, Sheng Liu, Hongyu Gao, Lei Han, Xun Chu, Sheng Yi, Weinian Shou, Yue Wang, Yunlong Liu, Jun Wan, Lei Yang
Software Mentions: 7
Published: over 4 years ago

10.3390/cancers13102432

Computational Treatment Simulations to Assess the Need for Personalized Tamoxifen Dosing in Breast Cancer Patients of Different Biogeographical Groups
Cited by: 1
Author(s): Anna Mueller‐Schoell, Robin Michelet, Lena Klopp‐Schulze, Madelé van Dyk, Thomas E. Mürdter, Matthias Schwab, Markus Joerger, Wilhelm Huisinga, Gerd Mikus, Charlotte Kloft
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0245626

Diversity of microbial communities and soil nutrients in sugarcane rhizosphere soil under water soluble fertilizer
Cited by: 20
Author(s): Huan Niu, Ziqin Pang, Nyumah Fallah, Yongmei Zhou, Caifang Zhang, Chaohua Hu, Wenxiong Lin, Zhaonian Yuan
Software Mentions: 7
Published: almost 4 years ago

10.1186/s13059-021-02466-0

Acute depletion of CTCF rewires genome-wide chromatin accessibility
Cited by: 26
Author(s): Beisi Xu, Hong Wang, Shaela Wright, Judith Hyle, Yang Zhang, Ying Shao, Mingming Niu, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel, Junmin Peng, Rui Lu, Chunliang Li
Software Mentions: 7
Published: over 3 years ago

10.1002/cam4.3434

The clinical value and potential molecular mechanism of the downregulation of MAOA in hepatocellular carcinoma tissues
Cited by: 20
Author(s): Yu‐Yan Pang, Jian‐Di Li, Gao Li, Xia Yang, Yi‐Wu Dang, Zhiyong Lai, Li‐Min Liu, Jie Yang, Huayu Wu, Rong‐Quan He, Zhi‐Guang Huang, Dandan Xiong, Lihua Yang, Lin Shi, Wei‐Jia Mo, Deng Tang, Huiping Lu, Gang Chen
Software Mentions: 7
Published: about 4 years ago

10.1186/s13059-021-02309-y

Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved alternative splicing nonsense-mediated decay pathways
Cited by: 11
Author(s): Carrie Kovalak, Scott Donovan, Alicia A. Bicknell, Mihir Metkar, Melissa J. Moore
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0216229

Effects of cropping, smoothing, triangle count, and mesh resolution on 6 dental topographic metrics
Cited by: 23
Author(s): Michael A. Berthaume, Julia M. Winchester, Kornelius Kupczik
Software Mentions: 7
Published: over 5 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 3 years ago

10.1002/cam4.4189

Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
Cited by: 7
Author(s): Shuang Shen, Xin Chen, Xiaochi Hu, Jinlong Huo, Libo Luo, Xuezhi Zhou
Software Mentions: 7
Published: over 3 years ago

10.3390/cancers12030690

Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo
Cited by: 17
Author(s): Nicholas R. Hum, Aimy Sebastian, Sean F. Gilmore, Wei He, Kelly A. Martin, Aubree Hinckley, Karen Dubbin, Monica L. Moya, Elizabeth K. Wheeler, Matthew A. Coleman, Gabriela G. Loots
Software Mentions: 7
Published: over 4 years ago

10.7717/peerj.4718

phylopath: Easy phylogenetic path analysis in R
Cited by: 90
Author(s): Wouter van der Bijl
Software Mentions: 7
Published: over 6 years ago

10.3390/cancers13163929

Maturation State-Specific Alternative Splicing in FLT3-ITD and NPM1 Mutated AML
Cited by: 4
Author(s): Anna Wojtuszkiewicz, Inge van der Werf, Stephan Hütter, Wencke Walter, Constance Baer, Wolfgang Kern, Jeroen Janssen, Gert J. Ossenkoppele, Claudia Haferlach, Jacqueline Cloos, Torsten Haferlach
Software Mentions: 7
Published: over 3 years ago

10.1186/s12885-020-07345-8

Identification of a metabolism-related gene expression prognostic model in endometrial carcinoma patients
Cited by: 19
Author(s): Pinping Jiang, Wei Sun, Ningmei Shen, Xin Huang, Shilong Fu
Software Mentions: 7
Published: about 4 years ago

10.1002/ece3.4397

Effect of plant root symbionts on performance of native woody species in competition with an invasive grass in multispecies microcosms
Cited by: 6
Author(s): Christina Birnbaum, Tim K. Morald, Mark Tibbett, Richard G. Bennett, Rachel J. Standish
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0254007

Text classification to streamline online wildlife trade analyses
Cited by: 7
Author(s): Oliver C. Stringham, Stephanie Moncayo, Katherine G. W. Hill, Adam Toomes, Lewis Mitchell, Joshua V. Ross, Phillip Cassey
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-015-0831-x

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Cited by: 1,430
Author(s): Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie, Éric Viara, Chong Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot
Software Mentions: 7
Published: almost 9 years ago

10.1186/s12967-020-02505-7

ANDC: an early warning score to predict mortality risk for patients with Coronavirus Disease 2019
Cited by: 44
Author(s): Zhihong Weng, Qiaosen Chen, Sumeng Li, Huadong Li, Qian Zhang, Sihong Lu, Ling Wu, Leiqun Xiong, Bobin Mi, Di Liu, Mengji Lu, Dongliang Yang, Hongbo Jiang, Shuang Zheng, Xin Zheng
Software Mentions: 7
Published: about 4 years ago

10.1186/s12870-019-1791-1

Size matters: three methods for estimating nuclear size in mycorrhizal roots of Medicago truncatula by image analysis
Cited by: 9
Author(s): Gennaro Carotenuto, Ivan Arcangelo Sciascia, Ludovica Oddi, Veronica Volpe, Andrea Genre
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0240512

Bone biodeterioration—The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community
Cited by: 19
Author(s): Anne Eriksen, Tue Kjærgaard Nielsen, Henning Matthiesen, Christian Carøe, Lars Hestbjerg Hansen, David Gregory, Gordon Turner‐Walker, Matthew J. Collins, M. Thomas P. Gilbert
Software Mentions: 7
Published: about 4 years ago

10.3390/ijerph17217771

The Quality of Work Index and the Quality of Employment Index: A Multidimensional Approach of Job Quality and Its Links to Well-Being at Work
Cited by: 23
Author(s): Georges Steffgen, Philipp Sischka, Martha Fernandez de Henestrosa
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0222822

Range of motion and between-measurement variation of spinal kinematics in sound horses at trot on the straight line and on the lunge
Cited by: 8
Author(s): A. M. Hardeman, Anna Byström, L. Roepstorff, J. H. Swagemakers, P. R. van Weeren, F. M. Serra Bragança
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12859-018-2435-4

Single sample scoring of molecular phenotypes
Cited by: 230
Author(s): Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Software Mentions: 7
Published: about 6 years ago

10.3389/fimmu.2020.578505

Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life
Cited by: 18
Author(s): Tue Bjerg Bennike, Benoit Fatou, Asimenia Angelidou, Joann Diray‐Arce, Reza Falsafi, Rebecca Ford, Erin E. Gill, Simon D. van Haren, Olubukola T. Idoko, Ahwon Lee, Rym Ben‐Othman, William Pomat, Casey P. Shannon, Kinga K. Smolen, Scott J. Tebbutt, Al Ozonoff, Peter Richmond, Anita H. J. van den Biggelaar, Robert E. W. Hancock, Beate Kampmann, Tobias R. Kollmann, Ofer Levy, Hanno Steen
Software Mentions: 7
Published: about 4 years ago

10.1038/s41598-021-89531-7

Reconstruction of the miR-506-Quaking axis in Idiopathic Pulmonary Fibrosis using integrative multi-source bioinformatics
Cited by: 2
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Chunguang Liang, Kevin Schmidt, Xiaoyan Ke, Annette Just, Angelika Pfanne, Andreas Pich, G. Warnecke, Peter Braubach, Christina Petzold, Danny Jonigk, Jörg H W Distler, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 6
Published: over 3 years ago

10.3390/foods10050914

Polar Lipids of Commercial Ulva spp. of Different Origins: Profiling and Relevance for Seaweed Valorization
Cited by: 12
Author(s): Ana S. P. Moreira, Elisabete da Costa, Tânia Melo, Diana Lopes, Adriana Pais, Sónia A.O. Santos, Bárbara Pitarma, Madalena Mendes, Maria Helena Abreu, Pi Nyvall Collén, Pedro Domingues, M. Rosário Domingues
Software Mentions: 6
Published: over 3 years ago

10.3390/genes12091300

Mitochondrial Genetic Heterogeneity in Leber’s Hereditary Optic Neuropathy: Original Study with Meta-Analysis
Cited by: 7
Author(s): Rajan Kumar Jha, Chhavi Dawar, Qurratulain Hasan, Akhilesh Pujar, Gaurav Gupta, Venugopalan Y Vishnu, Ramesh Kekunnaya, Kumarasamy Thangaraj
Software Mentions: 6
Published: over 3 years ago

10.3389/fmicb.2021.592725

Local Geomorphological Gradients and Land Use Patterns Play Key Role on the Soil Bacterial Community Diversity and Dynamics in the Highly Endemic Indigenous Afrotemperate Coastal Scarp Forest Biome
Cited by: 13
Author(s): Henry Joseph Oduor Ogola, Ramganesh Selvarajan, Memory Tekere
Software Mentions: 6
Published: almost 4 years ago

10.3390/jpm11030183

Maternal Psychological and Biological Factors Associated to Gestational Complications
Cited by: 10
Author(s): David Ramiro-Cortijo, María de la Calle, Vanesa Benítez, Andrea Gila-Díaz, Bernardo Moreno‐Jiménez, Silvia M. Arribas, Eva Garrosa
Software Mentions: 6
Published: over 3 years ago

10.18632/oncotarget.22942

S-adenosyl-methionine (SAM) alters the transcriptome and methylome and specifically blocks growth and invasiveness of liver cancer cells
Cited by: 33
Author(s): Yan Wang, Zhong Sheng Sun, Moshe Szyf
Software Mentions: 6
Published: almost 7 years ago

10.3389/fpls.2017.01094

Root Hair Mutations Displace the Barley Rhizosphere Microbiota
Cited by: 80
Author(s): Senga Robertson-Albertyn, Rodrigo Alegria Terrazas, Katharin Balbirnie, Manuel Blank, Agnieszka Janiak, Iwona Szarejko, Beata Chmielewska, J Karcz, Jenny Morris, Pete E. Hedley, Timothy S. George, Davide Bulgarelli
Software Mentions: 6
Published: over 7 years ago

10.1111/pbi.12834

Conversion of array‐based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum)
Cited by: 21
Author(s): Amanda Burridge, Paul Wilkinson, Mark Winfield, Gary Barker, Alexandra M. Allen, Jane A. Coghill, Christy Waterfall, Keith J. Edwards
Software Mentions: 6
Published: about 7 years ago

10.3389/fcell.2021.638374

Single-Cell Analysis Reveals Spatial Heterogeneity of Immune Cells in Lung Adenocarcinoma
Cited by: 9
Author(s): Youyu Wang, Xiaohua Li, Peng Shu, Honglin Hu, Yuntao Wang, Mengqi Shao, Gang Feng, Yu Liu, Yifeng Bai
Software Mentions: 6
Published: over 3 years ago

10.3389/fphys.2018.01767

Fractal and Multifractal Properties of Electrographic Recordings of Human Brain Activity: Toward Its Use as a Signal Feature for Machine Learning in Clinical Applications
Cited by: 29
Author(s): Lucas Gabriel Souza França, José García Vivas Miranda, Marco Leite, Niraj Sharma, Matthew C. Walker, Louis Lemieux, Yujiang Wang
Software Mentions: 6
Published: almost 6 years ago

10.1111/pce.13188

Global spatial analysis of Arabidopsis natural variants implicates 5′UTR splicing ofLATE ELONGATED HYPOCOTYLin responses to temperature
Cited by: 11
Author(s): Allan B. James, Stuart Sullivan, Hugh G. Nimmo
Software Mentions: 6
Published: over 6 years ago

10.1186/s13075-020-02403-9

Association study between immune-related miRNAs and mixed connective tissue disease
Cited by: 1
Author(s): Barbara Stypińska, Aleksandra Lewandowska, Anna Felis-Giemza, Marzena Olesińska, Agnieszka Paradowska‐Gorycka
Software Mentions: 6
Published: almost 4 years ago

10.18632/aging.102746

Identification of an immune-related risk signature for predicting prognosis in clear cell renal cell carcinoma
Cited by: 34
Author(s): Xiaoliang Hua, Juan Chen, Yang Su, Chaozhao Liang
Software Mentions: 6
Published: almost 5 years ago

10.1093/jisesa/ieab062

Comparison of Yellow and Blue Sticky Cards for Detection and Monitoring Parasitoid Wasps of the Invasive Halyomorpha halys (Hemiptera: Pentatomidae)
Cited by: 4
Author(s): Mark Cody Holthouse, Lori R. Spears, Diane G. Alston
Software Mentions: 6
Published: about 3 years ago

10.3390/ani10091612

Efficacy of Management and Monitoring Methods to Prevent Post-Harvest Losses Caused by Rodents
Cited by: 1
Author(s): Inge Krijger, Gerrit Gort, Steven R. Belmain, P.W.G. Groot Koerkamp, R.B. Shafali, B.G. Meerburg
Software Mentions: 6
Published: about 4 years ago

10.3389/fmicb.2019.00065

Comparison of Microbial Communities in the Sediments and Water Columns of Frozen Cryoconite Holes in the McMurdo Dry Valleys, Antarctica
Cited by: 29
Author(s): Pacifica Sommers, John L. Darcy, Dorota L. Porazinska, Eli M. S. Gendron, Andrew G. Fountain, Felix Jacob Zamora, Vincent Kim, Kaelin M. Cawley, Adam J. Solon, Lara Vimercati, Jenna Ryder, Steven K. Schmidt
Software Mentions: 6
Published: almost 6 years ago

10.1111/tpj.14184

An updated gene atlas for maize reveals organ‐specific and stress‐induced genes
Cited by: 91
Author(s): Genevieve M. Hoopes, John Hamilton, Joshua C. Wood, Eddi Esteban, Asher Pasha, Brieanne Vaillancourt, Nicholas J. Provart, C. Robin Buell
Software Mentions: 6
Published: almost 6 years ago

10.3390/ijerph18094966

Core and Whole Body Vibration Exercise Influences Muscle Sensitivity and Posture during a Military Foot March
Cited by: 2
Author(s): Kaitlin D. Lyons, Aaron G Parks, Oluwagbemiga O DadeMatthews, Nilophar L Zandieh, Paige McHenry, Kenneth E. Games, Michael D. Goodlett, William M. Murrah, Jaimie A. Roper, JoEllen M. Sefton
Software Mentions: 6
Published: over 3 years ago

10.1002/brb3.2259

Changes in the gut microbiome associated with infliximab in patients with bipolar disorder
Cited by: 3
Author(s): Aadil Bharwani, Jake C. Szamosi, Valerie H. Taylor, Yena Lee, Asem Bala, Rodrigo B. Mansur, Mehala Subramaniapillai, Michael G. Surette, Roger S. McIntyre
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0189338

Long disordered regions of the C-terminal domain of Abelson tyrosine kinase have specific and additive functions in regulation and axon localization
Cited by: 3
Author(s): Han S J Cheong, Mark F. A. VanBerkum
Software Mentions: 6
Published: almost 7 years ago

10.3389/fphar.2021.728368

A Novel Integrated Metabolism-Immunity Gene Expression Model Predicts the Prognosis of Lung Adenocarcinoma Patients
Cited by: 3
Author(s): Songming Chen, Yumei Duan, Yanhao Wu, Desong Yang, Jian An
Software Mentions: 6
Published: over 3 years ago

10.18632/aging.103168

Gut microbiota and metabolite alterations associated with reduced bone mineral density or bone metabolic indexes in postmenopausal osteoporosis
Cited by: 103
Author(s): Jianquan He, Shuaimei Xu, Bangzhou Zhang, Chuanxing Xiao, Zhangran Chen, Fuyou Si, Jifan Fu, Xiaobo Lin, Guohua Zheng, Guangchuang Yu, Jian Chen
Software Mentions: 6
Published: over 4 years ago

10.3390/ijerph17113762

Psychometric Properties of the Condom Use Self-Efficacy Scale among Young Colombians
Cited by: 7
Author(s): Vanessa Sanchez-Mendoza, Encarnación Soriano Ayala, Pablo Vallejo‐Medina
Software Mentions: 6
Published: over 4 years ago

10.3389/fped.2021.645060

Altered Gut Microbiota Taxonomic Compositions of Patients With Sepsis in a Pediatric Intensive Care Unit
Cited by: 12
Author(s): Jing Liu, Mingbang Wang, Wei-Ming Chen, Jing Ma, Yi Peng, Mingzhi Zhang, Chuanqing Wang, Gangfeng Yan, Guoping Li
Software Mentions: 6
Published: over 3 years ago

10.3389/fphar.2019.01394

Development, Testing, Parameterization, and Calibration of a Human Physiologically Based Pharmacokinetic Model for the Plasticizer, Hexamoll® Diisononyl-Cyclohexane-1, 2-Dicarboxylate Using In Silico, In Vitro, and Human Biomonitoring Data
Cited by: 9
Author(s): Kevin McNally, Craig Sams, George Loizou
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13068-021-01948-4

Differential expression of starch and sucrose metabolic genes linked to varying biomass yield in Miscanthus hybrids
Cited by: 6
Author(s): Jose J De Vega, Ned Peel, Sarah Purdy, Sarah Hawkins, Iain S. Donnison, Sarah Dyer, Kerrie Farrar
Software Mentions: 6
Published: over 3 years ago

10.3390/plants10061123

Genome-Wide Association Analysis for Stem Cross Section Properties, Height and Heading Date in a Collection of Spanish Durum Wheat Landraces
Cited by: 9
Author(s): Carmen M. Ávila, María Dolores Requena-Ramírez, Cristina Rodríguez-Suárez, Fernando Flores, Josefina C. Sillero, Sergio G. Atienza
Software Mentions: 6
Published: over 3 years ago

10.1186/s13068-020-01855-0

Lignin intermediates lead to phenyl acid formation and microbial community shifts in meso- and thermophilic batch reactors
Cited by: 7
Author(s): Eva Maria Prem, Mira Mutschlechner, Blaž Stres, Paul Illmer, Andreas Otto Wagner
Software Mentions: 6
Published: almost 4 years ago

10.3389/fonc.2021.614531

Identification and Validation of Hub Genes Associated With Hepatocellular Carcinoma Via Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Sumei Wang, Zuoli Song, Bing Teng, Jinjuan Zhang, Jiandong Zhang, Shuye Liu
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0136548

Familiar Face Detection in 180ms
Cited by: 47
Author(s): Matteo Visconti di Oleggio Castello, M. Ida Gobbini
Software Mentions: 6
Published: over 9 years ago

10.3389/fnbeh.2019.00175

Maternal Pregnancy-Related Anxiety Is Associated With Sexually Dimorphic Alterations in Amygdala Volume in 4-Year-Old Children
Cited by: 44
Author(s): Henriette Acosta, Jetro J. Tuulari, Noora M. Scheinin, Niloofar Hashempour, Olli Rajasilta, Tuomas I. Lavonius, Juho Pelto, Virva Saunavaara, Riitta Parkkola, Tuire Lähdesmäki, Lena Karlsson, Hasse Karlsson
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-021-04339-6

Predicting chemotherapy response using a variational autoencoder approach
Cited by: 7
Author(s): Qi Wei, Stephen A. Ramsey
Software Mentions: 6
Published: about 3 years ago

10.3389/fonc.2021.630706

The Immune-Related Gene HCST as a Novel Biomarker for the Diagnosis and Prognosis of Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Yongying Zhou, Xiao Wang, Weibing Zhang, Huiyong Liu, Daoquan Liu, Ping Chen, Dongmei Xu, Jianmin Liu, Yan Li, Guang Zeng, Mingzhou Li, Zhonghua Wu, Yingao Zhang, Xinghuan Wang, Michael E. DiSanto, Xinhua Zhang
Software Mentions: 6
Published: over 3 years ago

10.1042/BSR20200049

The construction and analysis of tumor-infiltrating immune cells and ceRNA networks in metastatic adrenal cortical carcinoma
Cited by: 10
Author(s): Runzhi Huang, Ziqi Liu, Tingli Tian, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Yihan Liu, Zhenyu Li, Tong Meng, Jie Zhang, Zongqiang Huang
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.634841

miRNA-Based Signature Associated With Tumor Mutational Burden in Colon Adenocarcinoma
Cited by: 7
Author(s): Weijie Xue, Yixiu Wang, Yuwei Xie, Caifeng Yang, Zhiqi Gong, Chunyang Guan, Chuanliang Wei, Chunhui Zhu, Zhaojian Niu
Software Mentions: 6
Published: over 3 years ago

10.34133/2020/1925495

Soybean Root System Architecture Trait Study through Genotypic, Phenotypic, and Shape-Based Clusters
Cited by: 30
Author(s): Kevin G. Falk, Talukder Z. Jubery, Jamie A. O’Rourke, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
Software Mentions: 6
Published: almost 5 years ago

10.3389/fonc.2021.639085

Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00017-19

Probiotic Bifidobacterium lactis V9 Regulates the Secretion of Sex Hormones in Polycystic Ovary Syndrome Patients through the Gut-Brain Axis
Cited by: 128
Author(s): Jiachao Zhang, Zhihong Sun, Shuaiming Jiang, Xiaoye Bai, Chenchen Ma, Qingyun Peng, Kaining Chen, Haibo Chang, Tuanyu Fang, Heping Zhang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-021-04128-1

Paired-end small RNA sequencing reveals a possible overestimation in the isomiR sequence repertoire previously reported from conventional single read data analysis
Cited by: 4
Author(s): José Francisco Sánchez-Herrero, Raquel Pluvinet, Antonio Luna de Haro, Lauro Sumoy
Software Mentions: 6
Published: over 3 years ago

10.1128/mSystems.00097-18

Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?
Cited by: 108
Author(s): Florent Mazel, Katherine M. Davis, Andrew H. Loudon, Waldan K. Kwong, Mathieu Groussin, Laura Wegener Parfrey
Software Mentions: 6
Published: about 6 years ago

10.3389/fnagi.2014.00146

Differential behavioral and physiological effects of anodal transcranial direct current stimulation in healthy adults of younger and older age
Cited by: 64
Author(s): Kirstin Heise, Martina Niehoff, Jan Feldheim, Gianpiero Liuzzi, Christian Gerloff, Friedhelm C. Hummel
Software Mentions: 6
Published: over 10 years ago

10.1128/mSystems.00100-17

Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephen Wandro, Lisa A. Carmody, Tara Gallagher, John J. LiPuma, Katrine Whiteson
Software Mentions: 6
Published: almost 7 years ago

10.1128/mSphere.00535-21

A Comprehensive Map of Mycobacterium tuberculosis Complex Regions of Difference
Cited by: 11
Author(s): Dmitry Bespiatykh, Julia Bespyatykh, Igor Mokrousov, Egor Shitikov
Software Mentions: 6
Published: over 3 years ago

10.1186/s12917-016-0838-x

Systemic immune response and virus persistence after foot-and-mouth disease virus infection of naïve cattle and cattle vaccinated with a homologous adenovirus-vectored vaccine
Cited by: 27
Author(s): Michael Eschbaumer, Carolina Stenfeldt, Steven I. Rekant, Juan M. Pacheco, E. E. Hartwig, George R. Smoliga, Mary Alice Kenney, William T. Golde, Luis L. Rodrı́guez, Jonathan Arzt
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0238527

Multiple decrement life tables of Cephus cinctus Norton (Hymenoptera: Cephidae) across a set of barley cultivars: The importance of plant defense versus cannibalism
Cited by: 3
Author(s): Buddhi B Achhami, Robert K. D. Peterson, Jamie Sherman, Gadi V. P. Reddy, David K. Weaver
Software Mentions: 6
Published: about 4 years ago

10.1128/mSystems.00043-17

The Skin Microbiome of Cohabiting Couples
Cited by: 86
Author(s): Ashley A. Ross, Andrew C. Doxey, Josh D. Neufeld
Software Mentions: 6
Published: over 7 years ago

10.1186/s12917-019-2205-1

Acute changes in the colonic microbiota are associated with large intestinal forms of surgical colic
Cited by: 8
Author(s): Shebl E. Salem, Thomas W. Maddox, Philipp Antczak, Julian M. Ketley, Nicola Williams, Debra Archer
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmolb.2021.675651

Construction and External Validation of a Ferroptosis-Related Gene Signature of Predictive Value for the Overall Survival in Bladder Cancer
Cited by: 28
Author(s): Jingchao Liu, Hong Ma, Lingfeng Meng, Xiaodong Liu, Zhengtong Lv, Yaoguang Zhang, Qianqian Wang
Software Mentions: 6
Published: over 3 years ago

10.1128/mSphere.00454-19

Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection
Cited by: 24
Author(s): David B. Stewart, Justin Wright, Maria Fowler, Christopher J. McLimans, Vasily Tokarev, Isabella Amaniera, Owen Baker, Hoi‐Tong Wong, Jeffrey L. Brabec, Rebecca Drucker, Regina Lamendella
Software Mentions: 6
Published: over 5 years ago

10.1186/s12894-021-00880-x

Cross-talk and clinical value of m[superscript 6]A regulatory gene in bladder cancer
Cited by: 0
Author(s): Benzheng Zhou, Qin Luo, Ye Zhang
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0184890

Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology
Cited by: 92
Author(s): Sarah E. Macdonald, Matthew J. Nolan, Kimberley Harman, Kay Boulton, David Hume, Fiona M. Tomley, Richard A. Stabler, Damer P. Blake
Software Mentions: 6
Published: about 7 years ago

10.1186/s42523-020-00044-6

An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range
Cited by: 9
Author(s): Janneke Schreuder, Francisca C. Velkers, Ruth Bouwstra, Nancy Beerens, J.A. Stegeman, Willem F. de Boer, Pim van Hooft, A.R.W. Elbers, Alex Bossers, Stephanie D. Jurburg
Software Mentions: 6
Published: over 4 years ago

Projects: cran: ggplot2

Papers Mentioning ggplot2 11,441