Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: limma

https://packages.ecosyste.ms/registries/bioconductor.org/packages/limma

Linear Models for Microarray Data
3 versions
Latest release: about 1 year ago
314 dependent packages
4,663,292 downloads total

Papers Mentioning limma 7,776

10.1186/s13148-019-0787-x
Methylomic profiling in trisomy 21 identifies cognition- and Alzheimer’s disease-related dysregulation
Cited by: 12
Author(s): Larissa Haertle, Tobias Müller, Roy Lardenoije, Anna Maierhofer, Marcus Dittrich, Renzo J. M. Riemens, Samantha Stora, M Roche, Markus Leber, Steffi G. Riedel‐Heller, Michael Wagner, Martin Scherer, Aimé Ravel, Clotilde Mircher, Cécile Cieuta‐Walti, Sophie Durand, Daniel L. A. van de Hove, Per Hoffmann, Alfredo Ramı́rez, Thomas Haaf, Nady El Hajj, André Mégarbané
Software Mentions: 6
Published: about 5 years ago
10.3389/fimmu.2020.606338
Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses
Cited by: 33
Author(s): Christoph Ruschil, Gisela Gabernet, Gildas Lepennetier, Simon Heumos, Miriam Kaminski, Zsuzsanna Hracskó, Martin Irmler, Johannes Beckers, Ulf Ziemann, Sven Nahnsen, Gregory P. Owens, Jeffrey L. Bennett, Bernhard Hemmer, Markus C. Kowarik
Software Mentions: 6
Published: almost 4 years ago
10.18632/aging.203190
Immune infiltration and a ferroptosis-associated gene signature for predicting the prognosis of patients with endometrial cancer
Cited by: 32
Author(s): Wenwu Yin, Liao Fuchun, Mengjie Chen, Xiaoqing Qin, Hao Lai, Yuan Lin, Desheng Yao
Software Mentions: 6
Published: over 3 years ago
10.15252/msb.202110253
Model‐guided development of an evolutionarily stable yeast chassis
Cited by: 5
Author(s): Filipa Pereira, Helena Lopes, Paulo Maia, Britta Meyer, Justyna Nocon, Paula Jouhten, D. Konstantinidis, Eleni Kafkia, Miguel Rocha, Peter Kötter, Isabel Rocha, Kiran R. Patil
Software Mentions: 6
Published: over 3 years ago
10.1080/21655979.2020.1847398
Development of cancer prognostic signature based on pan-cancer proteomics
Cited by: 6
Author(s): Weiguo Huang, Jianhui Chen, Wanqing Weng, Yukai Xiang, Hongqi Shi, Yunfeng Shan
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41380-020-0669-9
Transcriptome of iPSC-derived neuronal cells reveals a module of co-expressed genes consistently associated with autism spectrum disorder
Cited by: 37
Author(s): Karina Griesi-Oliveira, Mariana Soares Fogo, Bruna G G Pinto, Aline Yasuda Alves, Adriano K. Suzuki, Andressa Gois Morales, Suzana Ezquina, Omar Sosa, Gavin J. Sutton, Daniele Yumi Sunaga-Franze, Ana Paula Silva Bueno, Gabriela Seabra, Luis Roberto Sardinha, Silvia Souza da Costa, Carla Rosenberg, Elaine Cristina Zachi, Andréa L. Sertié, Daniel Martins‐de‐Souza, Eduardo M. Reis, Irina Voineagu, Maria Rita Passos‐Bueno
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pone.0227258
Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2
Cited by: 29
Author(s): Nhi Hin, Morgan Newman, Jan Kaslin, Alon M. Douek, Amanda L. Lumsden, Seyyed Hani Moussavi Nik, Yang Dong, Xin Zhou, Noralyn B. Mañucat-Tan, Alastair J. Ludington, David L. Adelson, Stephen Pederson, Michael Lardelli
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12859-018-2096-3
A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
Cited by: 32
Author(s): Zhenxing Wang, Xiaoliang Wu, Yadong Wang
Software Mentions: 6
Published: over 6 years ago
10.1186/s12872-021-02166-4
Identification of biomarkers associated with metabolic cardiovascular disease using mRNA-SNP-miRNA regulatory network analysis
Cited by: 4
Author(s): Zhiyuan Fan, Wei Peng, Zhiwen Wang, Ling Zhang, Kuo Li
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0153355
Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates
Cited by: 20
Author(s): Julie M. Yabu, Janet Siebert, Holden T. Maecker
Software Mentions: 6
Published: over 8 years ago
10.1186/1745-6150-7-44
Harnessing the complexity of gene expression data from cancer: from single gene to structural pathway methods
Cited by: 21
Author(s): Frank Emmert‐Streib, Shailesh Tripathi, Ricardo de Matos Simoes
Software Mentions: 6
Published: almost 13 years ago
10.1155/2020/1686480
miRNA-Based Feature Classifier Is Associated with Tumor Mutational Burden in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Yu Xia, Qi Wang, Xiaolin Huang, Xinhai Yin, Jukun Song, Ke Zhao, Xiaofeng Duan
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12885-021-08341-2
Identification of the prognostic value of ferroptosis-related gene signature in breast cancer patients
Cited by: 55
Author(s): Ding Wang, Guodong Wei, Jiangwei Ma, Shuai Cheng, Longyuan Jia, Xinyue Song, Ming Zhang, Mingyi Ju, Lin Wang, Lin Zhao, Shijie Xin
Software Mentions: 6
Published: over 3 years ago
10.3389/fimmu.2021.671201
Identification and Validation of the Signatures of Infiltrating Immune Cells in the Eutopic Endometrium Endometria of Women With Endometriosis
Cited by: 22
Author(s): Xinglong Wu, Jin-Jiao Chen, Huiling Zhou, Yu Wu, Fei Lin, Jing Shi, Hong-Zhen Wu, Hai-Qun Xiao, Wei Wang
Software Mentions: 6
Published: about 3 years ago
10.1038/s41598-020-80240-1
Ethanol exposure drives colon location specific cell composition changes in a normal colon crypt 3D organoid model
Cited by: 11
Author(s): Matthew Devall, Sarah J. Plummer, Jennifer Bryant, Lucas T. Jennelle, Stephen Eaton, Christopher H. Dampier, Jeroen R. Huyghe, Ulrike Peters, Steven M. Powell, Graham Casey
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pone.0254368
Identification and validation of a novel ferroptosis-related gene model for predicting the prognosis of gastric cancer patients
Cited by: 6
Author(s): Gang Liu, Jianying Ma, Gang Hu, Huan Jin
Software Mentions: 6
Published: over 3 years ago
10.1186/s12859-015-0751-5
Comparative study on gene set and pathway topology-based enrichment methods
Cited by: 61
Author(s): Michaela Bayerlová, Klaus Jung, Frank Krämer, Florian Klemm, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 6
Published: about 9 years ago
10.3390/biology10060502
Characterization of Tumor-Associated Macrophages and the Immune Microenvironment in Limited-Stage Neuroendocrine-High and -Low Small Cell Lung Cancer
Cited by: 22
Author(s): Dávid Dóra, Christopher J. Rivard, Hui Yu, Shivaun Lueke Pickard, Viktória László, Tünde Harkó, Zsolt Megyesfalvi, Elek Dinya, Csongor Gerdán, Gábor Szegvári, Fred R. Hirsch, Balázs Döme, Zoltán Lohinai
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.587479
Identification of Mitochondrial-Related Prognostic Biomarkers Associated With Primary Bile Acid Biosynthesis and Tumor Microenvironment of Hepatocellular Carcinoma
Cited by: 21
Author(s): Tao Zhang, Yingli Nie, Jian Gu, Kailin Cai, Xiangdong Chen, Huili Li, Jiliang Wang
Software Mentions: 6
Published: over 3 years ago
10.1186/s12885-019-6101-7
A large cohort study identifying a novel prognosis prediction model for lung adenocarcinoma through machine learning strategies
Cited by: 43
Author(s): Yin Li, Di Ge, Jie Gu, Fan Xu, Qinqing Zhu
Software Mentions: 6
Published: about 5 years ago
10.1186/s12885-021-08431-1
Five metastasis-related mRNAs signature predicting the survival of patients with liver hepatocellular carcinoma
Cited by: 7
Author(s): Chao Chen, Yan Qun Liu, Shi Qiu, Ya Li, Ning Jun Yu, Kang Liu, Li Ming Zhong
Software Mentions: 6
Published: over 3 years ago
10.1186/s12915-018-0547-y
Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging
Cited by: 52
Author(s): Ivonne Heinze, Martin Bens, Enrico Calzia, Susanne Holtze, Oleksandr Dakhovnik, Arne Sahm, Joanna Kirkpatrick, Karol Szafranski, Natalie Romanov, Sai Nagender Sama, Kerstin Hölzer, Stephan Singer, Maria A. Ermolaeva, Matthias Platzer, Thomas B. Hildebrandt, Alessandro Ori
Software Mentions: 6
Published: over 6 years ago
10.1002/cam4.3984
Signature based on metabolic‐related gene pairs can predict overall survival of osteosarcoma patients
Cited by: 8
Author(s): Long‐Qing Li, Liang‐Hao Zhang, Yongjie Yuan, Xin Lu, Yi Zhang, Yong‐Kui Liu, Wen Jiang, Manhas Abdul Khader, Tao Liu, Jiazhen Li, Yan Zhang
Software Mentions: 6
Published: over 3 years ago
10.1186/s12885-021-08083-1
Gene expression and immune infiltration in melanoma patients with different mutation burden
Cited by: 8
Author(s): Liwei Wang, Chuanxi Fu, Rui Li, Lei Shi, Guosheng Zhao, Yan Zhang
Software Mentions: 6
Published: over 3 years ago
10.1186/s40364-021-00292-x
The REASON score: an epigenetic and clinicopathologic score to predict risk of poor survival in patients with early stage oral squamous cell carcinoma
Cited by: 13
Author(s): Chi T. Viet, Gary Yu, Kesava Asam, Carissa M. Thomas, Angela J. Yoon, Yan Chen Wongworawat, Mina Haghighiabyaneh, Courtney A. Kilkuts, Caitlyn M. McGue, Marcus Couey, Nicholas Callahan, Coleen Doan, Paul C. Walker, Khanh K. Nguyen, Stephanie C. Kidd, Steve C. Lee, Anupama Grandhi, Allen Cheng, Ashish Patel, Elizabeth Philipone, Olivia L. Ricks, Clint Allen, Bradley E. Aouizerat
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pgen.1008531
ELF5 modulates the estrogen receptor cistrome in breast cancer
Cited by: 16
Author(s): Catherine Piggin, Daniel Roden, Andrew M. K. Law, Mark P. Molloy, Christoph Krisp, Alexander Swarbrick, Matthew J. Naylor, Maria Kalyuga, Warren Kaplan, Samantha Oakes, David Gallego‐Ortega, Susan J. Clark, Jason S. Carroll, Nenad Bartoniček, Christopher J. Ormandy
Software Mentions: 6
Published: almost 5 years ago
10.18632/aging.102714
ISG20 serves as a potential biomarker and drives tumor progression in clear cell renal cell carcinoma
Cited by: 22
Author(s): Tianbo Xu, Hailong Ruan, Su Gao, Jingchong Liu, Yuenan Liu, Zhengshuai Song, Qi Cao, Keshan Wang, Lin Bao, Di Liu, Junwei Tong, Jian Shi, Huageng Liang, Hongmei Yang, Ke Chen, Xiaoping Zhang
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12859-020-03715-y
MCMSeq: Bayesian hierarchical modeling of clustered and repeated measures RNA sequencing experiments
Cited by: 8
Author(s): Brian Vestal, Camille M. Moore, Elizabeth Wynn, Laura Saba, Tasha E. Fingerlin, Katerina Kechris
Software Mentions: 6
Published: over 4 years ago
10.1155/2021/6347592
Macrophages M1-Related Prognostic Signature in Hepatocellular Carcinoma
Cited by: 2
Author(s): Hao Zhang, Lin Sun, Xiao Hu
Software Mentions: 6
Published: about 3 years ago
10.18632/aging.103695
Glioblastoma cell differentiation trajectory predicts the immunotherapy response and overall survival of patients
Cited by: 26
Author(s): Zihao Wang, Xiaopeng Guo, Lu Gao, Yu Wang, Wenbin Ma, Bing Xing
Software Mentions: 6
Published: about 4 years ago
10.1155/2020/2319194
Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
Cited by: 4
Author(s): Yantao Tian, Yiquan Ke, Yanxia Ma
Software Mentions: 6
Published: about 4 years ago
10.1155/2021/5583400
Identification and Validation of Autophagy-Related Gene Nomograms to Predict the Prognostic Value of Patients with Cervical Cancer
Cited by: 3
Author(s): Jinqun Jiang, Hongxing Xu, Yihao Wang, Hai Lü
Software Mentions: 6
Published: over 3 years ago
10.1186/s12885-021-08052-8
Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma
Cited by: 2
Author(s): Weike Gao, Luan Li, Xinyin Han, Siyao Liu, Chengzhen Li, Guanying Yu, Lei Zhang, Dongsheng Zhang, Caiyun Liu, Erhong Meng, Shuai Hong, Dongliang Wang, Peiming Guo, Guangjun Shi
Software Mentions: 6
Published: over 3 years ago
10.1155/2020/8537381
Autophagy Regulatory Genes MET and RIPK2 Play a Prognostic Role in Pancreatic Ductal Adenocarcinoma: A Bioinformatic Analysis Based on GEO and TCGA
Cited by: 10
Author(s): Xingyu Li, Zhiqiang Li, Hongwei Zhu, Xiao Yu
Software Mentions: 6
Published: about 4 years ago
10.1155/2021/6635526
Construction and Validation of a Ferroptosis-Related Prognostic Model for Gastric Cancer
Cited by: 33
Author(s): Xiaotao Jiang, Qiaofeng Yan, Linling Xie, Shiqi Xu, Kailin Jiang, Jiahua Huang, Yi Wen, Yanhua Yan, Junhui Zheng, Shiyun Tang, Kechao Nie, Zhihua Zheng, Jinglin Pan, Peng Liu, Yuancheng Huang, Xingrui Yan, Yushan Zou, Xuan Chen, Fengbin Liu, Peiwu Li, Kunhai Zhuang
Software Mentions: 6
Published: almost 4 years ago
10.1186/1471-2105-13-102
Workflows for microarray data processing in the Kepler environment
Cited by: 14
Author(s): Thomas Stropp, Timothy M. McPhillips, Bertram Ludäscher, Mark Bieda
Software Mentions: 6
Published: over 12 years ago
10.1523/JNEUROSCI.1675-19.2019
Midkine-a Is Required for Cell Cycle Progression of Müller Glia during Neuronal Regeneration in the Vertebrate Retina
Cited by: 28
Author(s): Mikiko Nagashima, Travis S. D’Cruz, Antoinette Eyram Danku, Doneen Hesse, Christopher J. Sifuentes, Pamela A. Raymond, Peter F. Hitchcock
Software Mentions: 6
Published: almost 5 years ago
10.1186/s12859-015-0610-4
Factors affecting the accuracy of a class prediction model in gene expression data
Cited by: 17
Author(s): Putri W. Novianti, Victor L. Jong, Kit C. B. Roes, Marinus J.C. Eijkemans
Software Mentions: 6
Published: over 9 years ago
10.7554/eLife.37925
Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer
Cited by: 22
Author(s): Lili Liao, Zongzhi Z. Liu, Lauren Langbein, Weijia Cai, Eunah Cho, Jie Na, Xiaohua Niu, Wei Jiang, Zhijiu Zhong, Wesley L. Cai, Geetha Jagannathan, Essel Dulaimi, Joseph R. Testa, Robert G. Uzzo, Yuxin Wang, George R. Stark, Jianxin Sun, Stephen C. Peiper, Yaomin Xu, Qin Yan, Haifeng Yang
Software Mentions: 6
Published: about 6 years ago
10.3389/fcell.2021.641629
Dysregulation of miR-138-5p/RPS6KA1-AP2M1 Is Associated With Poor Prognosis in AML
Cited by: 10
Author(s): Donghu Yu, Chen Chen, Xiaoping Li, Jie Yao, Sheng Li, Xiaolan Ruan
Software Mentions: 6
Published: almost 4 years ago
10.7554/eLife.57345
Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
Cited by: 37
Author(s): Michelle C. Ward, Nicholas E. Banovich, Abhishek Sarkar, Matthew Stephens, Yoav Gilad
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pgen.1009506
Comparative analysis reveals distinctive epigenetic features of the human cerebellum
Cited by: 11
Author(s): Elaine E. Guevara, William D. Hopkins, Patrick R. Hof, John J. Ely, Brenda J. Bradley, Chet C. Sherwood
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pgen.1008749
Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
Cited by: 29
Author(s): Heini M. Natri, Katalina Bobowik, Pradiptajati Kusuma, Chelzie Crenna Darusallam, Guy S. Jacobs, Georgi Hudjashov, J. Stephen Lansing, Herawati Sudoyo, Nicholas E. Banovich, Murray P. Cox, Irene Gallego Romero
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pgen.1005053
Phenotype Specific Analyses Reveal Distinct Regulatory Mechanism for Chronically Activated p53
Cited by: 47
Author(s): Kristina Kirschner, Shamith A. Samarajiwa, Jonathan Cairns, Suraj Menon, Pedro A. Pérez–Mancera, Kosuke Tomimatsu, Camino Bermejo‐Rodríguez, Yoko Itō, Tamir Chandra, Masako Narita, Scott K. Lyons, Andy G. Lynch, Hiroshi Kimurâ, Tetsuya Ohbayashi, Simon Tavaré
Software Mentions: 6
Published: over 9 years ago
10.3390/cancers13112756
Association of Circadian Clock Gene Expression with Glioma Tumor Microenvironment and Patient Survival
Cited by: 6
Author(s): Julianie De La Cruz Minyety, Dorela Shuboni-Mulligan, Nicole Briceno, Demarrius Young, Mark R. Gilbert, Orieta Celiku, Terri S. Armstrong
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.622752
Tumor Immunometabolism Characterization in Ovarian Cancer With Prognostic and Therapeutic Implications
Cited by: 9
Author(s): Miner Yang, Gaowen Chen, Kunjie Gao, Yifeng Wang
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pcbi.1007869
PenDA, a rank-based method for personalized differential analysis: Application to lung cancer
Cited by: 8
Author(s): Magali Richard, Clémentine Decamps, Florent Chuffart, Élisabeth Brambilla, Sophie Rousseaux, Saadi Khochbin, Daniel Jost
Software Mentions: 6
Published: over 4 years ago
10.1007/s00109-020-01908-9
Immune landscape and a novel immunotherapy-related gene signature associated with clinical outcome in early-stage lung adenocarcinoma
Cited by: 17
Author(s): Xuanwen Bao, Run Shi, Tianyu Zhao, Yanfang Wang
Software Mentions: 6
Published: over 4 years ago
10.1186/s12885-020-06741-4
A novel risk score model based on eight genes and a nomogram for predicting overall survival of patients with osteosarcoma
Cited by: 30
Author(s): Guangzhi Wu, Minglei Zhang
Software Mentions: 6
Published: over 4 years ago
10.3389/fonc.2021.718644
N6-Methyladenosine Writer Gene ZC3H13 Predicts Immune Phenotype and Therapeutic Opportunities in Kidney Renal Clear Cell Carcinoma
Cited by: 10
Author(s): Tao Guo, Duan Huang, Jinbo Chen, Jinhui Liu, Belaydi Othmane, Jiao Hu, Huihuang Li, Xiongbing Zu
Software Mentions: 6
Published: over 3 years ago
10.3389/fcell.2021.646774
CRISPR-cas9 Screening Identified Lethal Genes Enriched in Cell Cycle Pathway and of Prognosis Significance in Breast Cancer
Cited by: 6
Author(s): Xi Sun, Zheng Wang, Xiaosong Chen, Kunwei Shen
Software Mentions: 6
Published: over 3 years ago
10.18632/aging.103923
Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
Cited by: 3
Author(s): Kui Chen, Bingqing Huang, Shan Yan, Siyi Xu, Keqin Li, Kuiming Zhang, Qi Wang, Zhongwei Zhuang, Liang Wei, Yanfei Zhang, Min Liu, Hao Lian, Chunlong Zhong
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pgen.1009035
The DNA methylome of human sperm is distinct from blood with little evidence for tissue-consistent obesity associations
Cited by: 12
Author(s): Fredrika Åsenius, T.J. Gorrie-Stone, Ama Brew, Yasmin Panchbhaya, Elizabeth Williamson, Leonard C Schalkwyk, Vardhman K. Rakyan, Michelle L. Holland, Sarah Marzi, David Williams
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pgen.1004994
Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling
Cited by: 147
Author(s): Kristofer Davie, Jelle Jacobs, Mardelle Atkins, Delphine Potier, Valerie Christiaens, Georg Halder, Stein Aerts
Software Mentions: 6
Published: almost 10 years ago
10.1155/2021/9943465
Construction and Validation of an Autophagy-Related Prognostic Model for Osteosarcoma Patients
Cited by: 2
Author(s): Qian-Nan Hu, Ting Lei, Pengfei Lei, Yihe Hu
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0037714
Dynamic Gene Expression in the Human Cerebral Cortex Distinguishes Children from Adults
Cited by: 32
Author(s): Kirstin N. Sterner, Amy Weckle, Harry T. Chugani, Adi L. Tarca, Chet C. Sherwood, Patrick R. Hof, Christopher W. Kuzawa, Amy M. Boddy, Asad Abbas, Ryan L. Raaum, Lucie Grégoire, Leonard Lipovich, Lawrence I. Grossman, Monica Uddin, Morris Goodman, Derek E. Wildman
Software Mentions: 6
Published: over 12 years ago
10.1371/journal.pcbi.1007162
Cross-species functional modules link proteostasis to human normal aging
Cited by: 10
Author(s): Andrea Komljenović, Hao Li, Vincenzo Sorrentino, Zoltán Kutalik, Johan Auwerx, Marc Robinson‐Rechavi
Software Mentions: 6
Published: over 5 years ago
10.3389/fcell.2021.622021
Identification of Potential ceRNA Network and Patterns of Immune Cell Infiltration in Systemic Sclerosis-Associated Interstitial Lung Disease
Cited by: 6
Author(s): Qiuhong Wu, Yang Liu, Yan Xie, Shixiong Wei, Yi Liu
Software Mentions: 6
Published: over 3 years ago
10.1155/2021/8842105
Comparison of the Fatty Acid Metabolism Pathway in Pan-Renal Cell Carcinoma: Evidence from Bioinformatics
Cited by: 1
Author(s): Ping Wu, Yingkun Xu, Jiayi Li, Xiaowei Li, Peizhi Zhang, Ningke Ruan, Cong Zhang, Panpan Sun, Qifei Wang, Guangzhen Wu
Software Mentions: 6
Published: almost 4 years ago
10.3389/fcell.2021.583555
DNA Methylation Regulates Transcription Factor-Specific Neurodevelopmental but Not Sexually Dimorphic Gene Expression Dynamics in Zebra Finch Telencephalon
Cited by: 8
Author(s): Jolien Diddens, Louis Coussement, Carolina Frankl-Vilches, Gaurav Majumdar, Sandra Steyaert, Sita M. ter Haar, Jeroen Galle, Ellen De Meester, Sarah De Keulenaer, Wim Van Criekinge, Charlotte Cornil, Jacques Balthazart, Annemie Van der Linden, Tim De Meyer, Wim Vanden Berghe
Software Mentions: 6
Published: over 3 years ago
10.1080/21623945.2019.1595269
Transcriptome profiling reveals association of peripheral adipose tissue pathology with type-2 diabetes in Asian Indians
Cited by: 17
Author(s): Aditya Saxena, Prabhat Tiwari, Nitin Wahi, Arpana Soni, Ram Chandra Bansiwal, Anshul Kumar, Balram Sharma, Prakash P Punjabi, Nidhi Gupta, Babita Malik, Krishna Mohan Medicherla, Prashanth Suravajhala, Sandeep Kumar Mathur
Software Mentions: 6
Published: almost 6 years ago
10.3389/fonc.2021.639600
Identification of VWF as a Novel Biomarker in Lung Adenocarcinoma by Comprehensive Analysis
Cited by: 8
Author(s): Yi He, Ruijie Liu, Minghui Yang, Wu Bi, Liuyin Zhou, Sai Zhang, Jin Jin, Xujun Liang, Pengfei Zhang
Software Mentions: 6
Published: over 3 years ago
10.1002/cam4.4161
Integrated pan‐cancer of <i>AURKA</i> expression and drug sensitivity analysis reveals increased expression of <i>AURKA</i> is responsible for drug resistance
Cited by: 12
Author(s): Noushin Miralaei, Ahmad Majd, Kamran Ghaedi, Maryam Peymani, Masoomeh Safaei
Software Mentions: 6
Published: over 3 years ago
10.7150/ijms.51918
Exploration of the relationship between tumor mutation burden and immune infiltrates in colon adenocarcinoma
Cited by: 3
Author(s): Rong Ouyang, Zhongzhuan Li, Peng Peng, Jinxiu Zhang, Jun Li, Mengbin Qin, Jiean Huang
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13045-018-0679-0
Whole-exon sequencing of human myeloma cell lines shows mutations related to myeloma patients at relapse with major hits in the DNA regulation and repair pathways
Cited by: 31
Author(s): Benoît Tessoulin, Agnès Moreau-Aubry, Géraldine Descamps, Patricia Gomez‐Bougie, Sophie Maïga, Alban Gaignard, David Chiron, Emmanuelle Ménoret, Steven Le Gouill, Philippe Moreau, Martine Amiot, Catherine Pellat‐Deceunynck
Software Mentions: 6
Published: about 6 years ago
10.3389/fcell.2021.682002
Identification of CDK2-Related Immune Forecast Model and ceRNA in Lung Adenocarcinoma, a Pan-Cancer Analysis
Cited by: 34
Author(s): Tingting Liu, Rui Li, Huo Chen, Jianping Li, Jie Yao, Xiu-Li Ji, Yi-Qing Qu
Software Mentions: 6
Published: over 3 years ago
10.1186/s13045-021-01131-0
High-resolution Hi-C maps highlight multiscale 3D epigenome reprogramming during pancreatic cancer metastasis
Cited by: 16
Author(s): Bo Ren, Jinshou Yang, Yuming Wang, Gang Ye, Huanyu Wang, Chen Yuan, Ruiyuan Xu, Xu-Ning Fan, Lei You, Taiping Zhang, Yupei Zhao
Software Mentions: 6
Published: over 3 years ago
10.7150/ijms.61309
Integrated analysis of the molecular mechanisms in idiopathic pulmonary fibrosis
Cited by: 6
Author(s): Ke Zhu, Aiqun Xu, Wanli Xia, Pulin Li, Rui Han, Enze Wang, Sijing Zhou, Ran Wang
Software Mentions: 6
Published: almost 4 years ago
10.1186/1743-422X-11-126
Reactive astrogliosis in response to hemorrhagic fever virus: microarray profile of Junin virus-infected human astrocytes
Cited by: 8
Author(s): Olga A. Kolokoltsova, Nadezhda E. Yun, Slobodan Paessler
Software Mentions: 6
Published: over 10 years ago
10.7150/ijms.46456
Lipid Metabolism is the common pathologic mechanism between Type 2 Diabetes Mellitus and Parkinson's disease
Cited by: 6
Author(s): Xi Zhang, Yu Fan, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 6
Published: almost 5 years ago
10.1371/journal.pcbi.1008491
Predictive network modeling in human induced pluripotent stem cells identifies key driver genes for insulin responsiveness
Cited by: 14
Author(s): Iván Cárcamo-Orive, Marc Henrion, Kuixi Zhu, Noam D. Beckmann, Paige Cundiff, Sara Moein, Zenan Zhang, Melissa Alamprese, Sunita L. D’Souza, Martin Wabitsch, Eric E. Schadt, Thomas Quertermous, Joshua W. Knowles, Rui Chang
Software Mentions: 6
Published: almost 4 years ago
10.3389/fcell.2021.640476
A Comprehensive Investigation to Reveal the Relationship Between Plasmacytoid Dendritic Cells and Breast Cancer by Multiomics Data Analysis
Cited by: 8
Author(s): Sai Tian, Yan Li, Lu Fu, Zhen Zhang, Jinbo Zhang, Guofeng Meng, Weidong Zhang
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-021-89531-7
Reconstruction of the miR-506-Quaking axis in Idiopathic Pulmonary Fibrosis using integrative multi-source bioinformatics
Cited by: 2
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Chunguang Liang, Kevin Schmidt, Xiaoyan Ke, Annette Just, Angelika Pfanne, Andreas Pich, G. Warnecke, Peter Braubach, Christina Petzold, Danny Jonigk, Jörg H W Distler, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 6
Published: over 3 years ago
10.3390/v10090512
Robust Innate Immunity of Young Rabbits Mediates Resistance to Rabbit Hemorrhagic Disease Caused by Lagovirus Europaeus GI.1 But Not GI.2
Cited by: 28
Author(s): Matthew J. Neave, Robyn N. Hall, Nina Huang, Kenneth A. McColl, Peter J. Kerr, Marion Hoehn, Jennifer Taylor, Tanja Strive
Software Mentions: 6
Published: about 6 years ago
10.3389/fcell.2021.717601
Tumor Immune Microenvironment Landscape in Glioma Identifies a Prognostic and Immunotherapeutic Signature
Cited by: 5
Author(s): Chunyu Zhang, Lirui Guo, Zhongzhou Su, Na Luo, Yinqiu Tan, Pengfei Xu, Liguo Ye, Shiao Tong, Haitao Liu, Xiaobin Li, Qianxue Chen, Daofeng Tian
Software Mentions: 6
Published: about 3 years ago
10.3389/fcell.2021.648856
Comprehensive Characterization of Cachexia-Inducing Factors in Diffuse Large B-Cell Lymphoma Reveals a Molecular Subtype and a Prognosis-Related Signature
Cited by: 5
Author(s): Zhixing Kuang, Xun Li, Rongqiang Liu, Shaoxing Chen, Jiannan Tu
Software Mentions: 6
Published: over 3 years ago
10.1186/s40170-020-00217-6
Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer
Cited by: 56
Author(s): Kaylyn D. Tousignant, Anja Rockstroh, Berwyck L. J. Poad, Ali Talebi, Reuben S. E. Young, Atefeh Taherian Fard, Rajesh Gupta, Tuo Zang, Chenwei Wang, Melanie Lehman, Johan Swinnen, Stephen J. Blanksby, Colleen C. Nelson, Martin C. Sadowski
Software Mentions: 6
Published: over 4 years ago
10.3389/fonc.2021.665870
Prognostic and Predictive Value of Immune-Related Gene Pair Signature in Primary Lower-Grade Glioma Patients
Cited by: 2
Author(s): Kunjian Lei, Jingying Li, Zewei Tu, Feng Liu, Minhua Ye, Minxian Wu, Yue Zhu, Min Luo, Lin Li, Chuming Tao, Kai Huang, Xingen Zhu
Software Mentions: 6
Published: over 3 years ago
10.3389/fcell.2021.672248
Immune Infiltrates of m6A RNA Methylation-Related lncRNAs and Identification of PD-L1 in Patients With Primary Head and Neck Squamous Cell Carcinoma
Cited by: 25
Author(s): Ziyi Feng, Haoyu Gao, Tianda Feng
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-021-86319-7
Screening of osteoarthritis diagnostic markers based on immune-related genes and immune infiltration
Cited by: 15
Author(s): Wenhua Yuan, Qiqi Xie, Ke-Ping Wang, Wei Shen, Xiaofei Feng, Zheng Liu, Jin-Tao Shi, Xiaobo Zhang, Kai Zhang, Yajun Deng, Hai-Yu Zhou
Software Mentions: 6
Published: over 3 years ago
10.18632/aging.203260
Screening and identification of angiogenesis-related genes as potential novel prognostic biomarkers of hepatocellular carcinoma through bioinformatics analysis
Cited by: 6
Author(s): Zili Zhen, Zan Shen, Yanmei Hu, Peilong Sun
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-021-82379-x
Evidence for strong environmental control on bacterial microbiomes of Antarctic springtails
Cited by: 5
Author(s): Chiara Leo, Francesco Nardi, Claudio Cucini, Francesco Frati, Peter Convey, James T. Weedon, Dick Roelofs, Antonio Carapelli
Software Mentions: 6
Published: almost 4 years ago
10.1038/s41598-020-79736-7
BIRC5 is a prognostic biomarker associated with tumor immune cell infiltration
Cited by: 37
Author(s): Lijun Xu, Wenpeng Yu, Han Xiao, Lin Kang
Software Mentions: 6
Published: almost 4 years ago
10.15252/msb.20209684
Genetic regulation of liver lipids in a mouse model of insulin resistance and hepatic steatosis
Cited by: 14
Author(s): Frode Norheim, Karthickeyan Chella Krishnan, Thomas Bjellaas, Laurent Vergnes, Calvin Pan, Brian W. Parks, Yan Meng, Jennifer M. Lang, James A. Ward, Karen Reue, Margarete Mehrabian, Thomas E. Gundersen, Miklós Péterfy, Knut Tomas Dalen, Christian A. Drevon, Simon T. Hui, Aldons J. Lusis, Marcus M. Seldin
Software Mentions: 6
Published: almost 4 years ago
10.1186/s40659-021-00340-8
Identification of 5-methylcytosine-related signature for predicting prognosis in ovarian cancer
Cited by: 9
Author(s): Lei Wang, Song Gao
Software Mentions: 6
Published: over 3 years ago
10.1155/2020/5816763
Screening of T Cell-Related Long Noncoding RNA-MicroRNA-mRNA Regulatory Networks in Non-Small-Cell Lung Cancer
Cited by: 6
Author(s): Jinping Duan, Yuefen Pan, Yang Xi, Liping Zhong, Jia Yin, Jingying Xu, Zhuang Jing, Shuwen Han
Software Mentions: 6
Published: about 4 years ago
10.3389/fonc.2021.629633
GMFG Has Potential to Be a Novel Prognostic Marker and Related to Immune Infiltrates in Breast Cancer
Cited by: 5
Author(s): Yan Yang, Xin He, Qianqian Tang, You-Cheng Shao, Wenjing Song, Peng Gong, Yifan Zeng, Shu‐Chun Huang, Jiang-Yao Zhou, Huifang Wan, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: over 3 years ago
10.15252/msb.20156520
Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children
Cited by: 93
Author(s): Tobias Bauer, Saskia Trump, Naveed Ishaque, Loreen Thürmann, Lei Gu, Mario Bauer, Matthias Bieg, Zuguang Gu, Dieter Weichenhan, Jan‐Philipp Mallm, Stefan Röder, Gunda Herberth, Eiko Takada, Oliver Mücke, Marcus Winter, Kristin M. Junge, Konrad Grützmann, Ulrike Rolle-Kampczyk, Qi Wang, Christian Lawerenz, Michael Borte, Tobias Polte, Matthias Schlesner, Michaela Schanné, Stefan Wiemann, Christina Geörg, Hendrik G. Stunnenberg, Christoph Plass, Karsten Rippe, Junichiro Mizuguchi, Carl Herrmann, Roland Eils, Irina Lehmann
Software Mentions: 6
Published: almost 9 years ago
10.1038/s41598-020-75505-8
Proteomic signatures of acute oxidative stress response to paraquat in the mouse heart
Cited by: 12
Author(s): Vishantie Dostal, Silas D. Wood, Cody T Thomas, Yu Han, Edward Lau, Maggie P. Y. Lam
Software Mentions: 6
Published: about 4 years ago
10.1002/1878-0261.12062
Methylation profiling of paediatric pilocytic astrocytoma reveals variants specifically associated with tumour location and predictive of recurrence
Cited by: 14
Author(s): Alexandra Sexton-Oates, Andrew Dodgshun, Volker Hovestadt, David Jones, David M. Ashley, Michael J. Sullivan, Duncan MacGregor, Richard Saffery
Software Mentions: 6
Published: over 6 years ago
10.1186/s13148-019-0755-5
Alzheimer’s disease-associated (hydroxy)methylomic changes in the brain and blood
Cited by: 79
Author(s): Roy Lardenoije, Janou A. Y. Roubroeks, Ehsan Pishva, Markus Leber, Holger Wagner, Artemis Iatrou, Adam R. Smith, Rebecca G. Smith, Lars Eijssen, Luca Kleineidam, Amit Kawalia, Per Hoffmann, Tobias Luck, Steffi G. Riedel‐Heller, Frank Jessen, Wolfgang Maier, Michael Wagner, René Hurlemann, Günter Kenis, Muhammad Ali, Antonio del Sol, Diego Mastroeni, Elaine Delvaux, Paul D. Coleman, Jonathan Mill, Bart P. F. Rutten, Katie Lunnon, Alfredo Ramı́rez, Daniël L.A. van den Hove
Software Mentions: 6
Published: about 5 years ago
10.1002/JLB.5MA0120-209R
Distinct and shared gene expression for human innate versus adaptive helper lymphoid cells
Cited by: 28
Author(s): Giuseppe Ercolano, Tania Wyss, Bérengère Salomé, Pedro Romero, Sara Trabanelli, Camilla Jandus
Software Mentions: 6
Published: almost 5 years ago
10.1002/1878-0261.12755
The benefits of smoking cessation on survival in cancer patients by integrative analysis of multi‐omics data
Cited by: 7
Author(s): Sheng Yang, Tong Liu, Geyu Liang
Software Mentions: 6
Published: over 4 years ago
10.1002/cam4.4115
Development and validation of a <i>PBRM1</i>‐associated immune prognostic model for clear cell renal cell carcinoma
Cited by: 5
Author(s): Jiayi Chen, Chunlin Yao, Nan Qiao, Yangyang Ge, Jianhua Li, Yun Lin, Shanglong Yao
Software Mentions: 6
Published: about 3 years ago
10.1186/s13148-020-00944-z
Epigenome-wide association study of Alzheimer’s disease replicates 22 differentially methylated positions and 30 differentially methylated regions
Cited by: 38
Author(s): Qingqin Li, Yu Sun, Tania Wang
Software Mentions: 6
Published: about 4 years ago
10.1155/2020/8182358
Two Gene Set Variation Index as Biomarker of Bacterial and Fungal Sepsis
Cited by: 4
Author(s): Xiaowen Zheng, Yifeng Luo, Qian Li, Jihua Feng, Chunling Zhao, Junyu Lu, Jiefeng Luo, Jianfeng Zhang
Software Mentions: 6
Published: over 4 years ago
10.1080/21655979.2020.1840731
Bioinformatics analysis to screen key prognostic genes in the breast cancer tumor microenvironment
Cited by: 9
Author(s): Qian Ye, Xiaofei Han, Zhengsheng Wu
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41598-020-69330-2
A novel predictive model incorporating immune-related gene signatures for overall survival in melanoma patients
Cited by: 14
Author(s): Mengting Liao, Furong Zeng, Li Yao, Qian Gao, Mingzhu Yin, Guangtong Deng, Xiang Chen
Software Mentions: 6
Published: over 4 years ago
10.1111/acel.13381
Inhibition of the neuromuscular acetylcholine receptor with atracurium activates FOXO/DAF‐16‐induced longevity
Cited by: 7
Author(s): Rebecca L. McIntyre, Simone Denis, Rashmi Kamble, Marte Molenaars, Michael Petr, Bauke V. Schomakers, Mizanur Rahman, Siddhartha Datta Gupta, Márton L. Tóth, Siva A. Vanapalli, Aldo Jongejan, Morten Scheibye‐Knudsen, Riekelt H. Houtkooper, Georges E. Janssens
Software Mentions: 6
Published: over 3 years ago
10.1038/mt.2014.86
Characterizing Human Stem Cell–derived Sensory Neurons at the Single-cell Level Reveals Their Ion Channel Expression and Utility in Pain Research
Cited by: 105
Author(s): Gareth T. Young, Alex Gutteridge, Heather De Fox, Anna Wilbrey, Lishuang Cao, Lily T Cho, Adam R. Brown, Caroline Benn, Laura R Kammonen, Julia Friedman, Magda Bictash, Paul Whiting, James Bilsland, Edward B. Stevens
Software Mentions: 6
Published: over 10 years ago