Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.11355.2

https://doi.org/10.12688/f1000research.11355.2

Arkas: Rapid reproducible RNAseq analysis

Cited by: 9
Author(s): Anthony Colombo, Timothy J. Triche, Giridharan Ramsingh
Published: over 7 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
pypi: Archive
Simple library that provides a common interface for extracting zip and tar archives.
Papers that mentioned: 363
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307