Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1008531

https://doi.org/10.1371/journal.pgen.1008531

Cited by: 16
Author(s): Catherine Piggin, Daniel Roden, Andrew M. K. Law, Mark P. Molloy, Christoph Krisp, Alexander Swarbrick, Matthew J. Naylor, Maria Kalyuga, Warren Kaplan, Samantha Oakes, David Gallego‐Ortega, Susan J. Clark, Jason S. Carroll, Nenad Bartoniček, Christopher J. Ormandy
Published: over 4 years ago

Software Mentions 6

bioconductor: ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962

bioconductor: DiffBind

Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: MACS

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779