bioconductor: GSVA | Projects | Ecosyste.ms: Papers

10.3389/fcell.2021.638374

Single-Cell Analysis Reveals Spatial Heterogeneity of Immune Cells in Lung Adenocarcinoma
Cited by: 9
Author(s): Youyu Wang, Xiaohua Li, Peng Shu, Honglin Hu, Yuntao Wang, Mengqi Shao, Gang Feng, Yu Liu, Yifeng Bai
Software Mentions: 6
Published: about 3 years ago

10.1186/s12885-021-08671-1

Downregulation of CCL22 and mutated NOTCH1 in tongue and mouth floor squamous cell carcinoma results in decreased Th2 cell recruitment and expression, predicting poor clinical outcome
Cited by: 4
Author(s): Xuejie Li, Zheqi Liu, Wenkai Zhou, Xiaofang Liu, Wei Cao
Software Mentions: 6
Published: over 3 years ago

10.1186/s40170-020-00217-6

Therapy-induced lipid uptake and remodeling underpin ferroptosis hypersensitivity in prostate cancer
Cited by: 56
Author(s): Kaylyn D. Tousignant, Anja Rockstroh, Berwyck L. J. Poad, Ali Talebi, Reuben S. E. Young, Atefeh Taherian Fard, Rajesh Gupta, Tuo Zang, Chenwei Wang, Melanie Lehman, Johan Swinnen, Stephen J. Blanksby, Colleen C. Nelson, Martin C. Sadowski
Software Mentions: 6
Published: over 4 years ago

10.3390/genes11060623

Computational Analysis of Transcriptomic and Proteomic Data for Deciphering Molecular Heterogeneity and Drug Responsiveness in Model Human Hepatocellular Carcinoma Cell Lines
Cited by: 3
Author(s): Panagiotis Agioutantis, Heleni Loutrari, Fragiskos N. Kolisis
Software Mentions: 6
Published: over 4 years ago

10.18632/oncotarget.16544

The integrative metabolomic-transcriptomic landscape of glioblastome multiforme
Cited by: 20
Author(s): Dieter Henrik Heiland, Jakob Wörner, Jan Gerrit Haaker, Daniel Delev, Nils Pompe, Bianca Mercas, Pamela Franco, Annette Gäbelein, Sabrina Heynckes, Dietmar Pfeifer, Stefan Weber, Irina Mader, Oliver Schnell
Software Mentions: 6
Published: over 7 years ago

10.1002/cam4.3251

Uridine phosphorylase 1 is a novel immune‐related target and predicts worse survival in brain glioma
Cited by: 16
Author(s): Jin Wang, Shi‐Hai Xu, Wen Lv, Fei Shi, Shanshan Mei, Aijun Shan, Jiake Xu, Ying Yang
Software Mentions: 6
Published: over 4 years ago

10.3389/fmolb.2021.644557

Reconstruction and Analysis of the Immune-Related LINC00987/A2M Axis in Lung Adenocarcinoma
Cited by: 8
Author(s): Jiakang Ma, Xinhua Lin, Xueting Wang, Qing-Qing Min, Tonglian Wang, Chaozhi Tang
Software Mentions: 6
Published: over 3 years ago

10.3389/fcvm.2020.580573

Comprehensive Identification of Key Genes Involved in Development of Diabetes Mellitus-Related Atherogenesis Using Weighted Gene Correlation Network Analysis
Cited by: 14
Author(s): Qi Huang, Guo-Xiong Deng, Rongguo Wei, Qiaoye Wang, Donghua Zou, Jinru Wei
Software Mentions: 6
Published: about 4 years ago

10.1155/2021/6347592

Macrophages M1-Related Prognostic Signature in Hepatocellular Carcinoma
Cited by: 2
Author(s): Hao Zhang, Lin Sun, Xiao Hu
Software Mentions: 6
Published: about 3 years ago

10.1155/2021/5545261

Ndufs1 Deficiency Aggravates the Mitochondrial Membrane Potential Dysfunction in Pressure Overload-Induced Myocardial Hypertrophy
Cited by: 17
Author(s): Rongjun Zou, Jun Tao, Junxiong Qiu, Wu Shi, Ming‐Hui Zou, Weidan Chen, Wenlei Li, Na Zhou, Shaoli Wang, Li Ma, Xinxin Chen
Software Mentions: 6
Published: over 3 years ago

10.1002/cam4.3984

Signature based on metabolic‐related gene pairs can predict overall survival of osteosarcoma patients
Cited by: 8
Author(s): Long‐Qing Li, Liang‐Hao Zhang, Yongjie Yuan, Xin Lu, Yi Zhang, Yong‐Kui Liu, Wen Jiang, Manhas Abdul Khader, Tao Liu, Jiazhen Li, Yan Zhang
Software Mentions: 6
Published: over 3 years ago

10.3390/ijms22168482

Multicellular Human Cardiac Organoids Transcriptomically Model Distinct Tissue-Level Features of Adult Myocardium
Cited by: 17
Author(s): Charles M. Kerr, Dylan Richards, Donald R. Menick, Kristine Y. DeLeon‐Pennell, Ying Mei
Software Mentions: 6
Published: over 3 years ago

10.1186/s12885-021-08711-w

Construction of a ceRNA network of hub genes affecting immune infiltration in ovarian cancer identified by WGCNA
Cited by: 12
Author(s): Rongjia Su, Chengjuan Jin, Lina Zhou, Yannan Cao, Menghua Kuang, Linxia Li, Jianbin Xiang
Software Mentions: 6
Published: about 3 years ago

10.3389/fonc.2020.557638

Tumor-Infiltrating Immune Cell Signature Predicts the Prognosis and Chemosensitivity of Patients With Pancreatic Ductal Adenocarcinoma
Cited by: 21
Author(s): Yinghong Gao, Shipeng Chen, Somayeh Vafaei, Xiaoli Zhong
Software Mentions: 6
Published: about 4 years ago

10.1186/s13550-017-0355-3

A novel genomic signature predicting FDG uptake in diverse metastatic tumors
Cited by: 4
Author(s): Aurora Crespo-Jara, Maria Carmen Redal-Peña, E. Martinez-Navarro, Manuel Sureda, Francisco J. Fernández-Morejón, Francisco Javier Garcia-Cases, Ramón González Manzano, Antonio Brugarolas
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12935-020-01552-w

Transcriptomic characterization and innovative molecular classification of clear cell renal cell carcinoma in the Chinese population
Cited by: 7
Author(s): Qiang Zhao, Jian Xue, Bo Hong, Wubin Qian, Tiezhu Liu, Bin Fan, Jie Cai, Yunpeng Ji, Jia Liu, Yong Yang, Qi-Xiang Li, Sheng Guo, Ning Zhang
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2021.721644

CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular Carcinoma
Cited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: about 3 years ago

10.1007/s10616-020-00384-w

Genome-wide expression profiling reveals increased stability and mitochondrial energy metabolism of the human liver cell line HepaRG-CAR
Cited by: 1
Author(s): Aziza A. A. Adam, Aldo Jongejan, Perry D. Moerland, Vincent A. van der Mark, Ronald P.J. Oude Elferink, R. A. F. M. Chamuleau, Ruurdtje Hoekstra
Software Mentions: 6
Published: over 4 years ago

10.3389/fgene.2021.639254

Identification and Validation of a Novel Immune-Related Four-lncRNA Signature for Lung Adenocarcinoma
Cited by: 14
Author(s): Jixin Wang, Xiangjun Yin, Yin‐Qiang Zhang, Xuming Ji
Software Mentions: 6
Published: over 3 years ago

10.1038/s42003-020-01476-1

Single-cell analysis supports a luminal-neuroendocrine transdifferentiation in human prostate cancer
Cited by: 58
Author(s): Baijun Dong, Juju Miao, Yanqing Wang, Wenqin Luo, Zhongzhong Ji, Huadong Lai, Man Zhang, Xiaomu Cheng, Jinming Wang, Yuxiang Fang, Helen He Zhu, Chee Wai Chua, Liancheng Fan, Yao Zhu, Jiahua Pan, Jia Wang, Wei Xue, Wei‐Qiang Gao
Software Mentions: 6
Published: almost 4 years ago

10.3389/fmolb.2021.607090

Identification of an IRGP Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer
Cited by: 12
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 6
Published: over 3 years ago

10.3389/fmolb.2021.628546

Identification of Molecular Subtypes and Key Genes of Atherosclerosis Through Gene Expression Profiles
Cited by: 3
Author(s): Yujia Yang, Yuchen Cai, Yuan Zhang, Yuanfu Xu, Zhiqiang Xu
Software Mentions: 6
Published: over 3 years ago

10.1186/s12915-021-01071-8

Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma
Cited by: 17
Author(s): Wenqin Luo, Guan Ning Lin, Weichen Song, Yu Zhang, Huadong Lai, Man Zhang, Juju Miao, Xiaomu Cheng, Yongjie Wang, Wang Li, Wenxiang Wei, Wei‐Qiang Gao, Ru Yang, Jia Wang
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2020.566159

Identifying 8-mRNAsi Based Signature for Predicting Survival in Patients With Head and Neck Squamous Cell Carcinoma via Machine Learning
Cited by: 10
Author(s): Yanhua Tian, Juncheng Wang, Chao Qin, Guanghao Zhu, Xuan Chen, Zhixiang Chen, Yuexiang Qin, Ming Wei, Zhexuan Li, Xin Zhang, Yunxia Lv, Gengming Cai
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2020.578933

Comprehensive Analysis of Prognostic Markers for Acute Myeloid Leukemia Based on Four Metabolic Genes
Cited by: 7
Author(s): Yuanyuan Zhang, Shuai Ma, Moran Wang, Wei Shi, Yu Hu
Software Mentions: 6
Published: about 4 years ago

10.1155/2021/9943465

Construction and Validation of an Autophagy-Related Prognostic Model for Osteosarcoma Patients
Cited by: 2
Author(s): Qian-Nan Hu, Ting Lei, Pengfei Lei, Yihe Hu
Software Mentions: 6
Published: over 3 years ago

10.1002/ctm2.253

Multiregion single‐cell sequencing reveals the transcriptional landscape of the immune microenvironment of colorectal cancer
Cited by: 34
Author(s): Wei Wang, Yu Zhong, Zhenkun Zhuang, Junping Xie, Yueer Lu, Chengzhi Huang, Yan Sun, Liang Wu, Jianhua Yin, Hang Yu, Zhiqiang Jiang, Shanshan Wang, Chunqing Wang, Yuanhang Zhang, Yilin Huang, Chongyin Han, Zhenggang Zhong, Jialin Hu, Ying Ouyang, Huisheng Liu, Mengya Yu, Xiaochan Wei, Dandan Chen, Lizhen Huang, Yong Hou, Zhanglin Lin, Shiping Liu, Fei Ling, Xueqing Yao
Software Mentions: 6
Published: almost 4 years ago

10.3389/fonc.2021.697198

A Pyroptosis-Related Gene Signature for Predicting Survival in Glioblastoma
Cited by: 40
Author(s): Xinyu Li, Luyu Zhang, Xueyuan Li, Xitao Yang, Lixin Su
Software Mentions: 6
Published: over 3 years ago

10.1186/s13045-021-01131-0

High-resolution Hi-C maps highlight multiscale 3D epigenome reprogramming during pancreatic cancer metastasis
Cited by: 16
Author(s): Bo Ren, Jinshou Yang, Yuming Wang, Gang Ye, Huanyu Wang, Chen Yuan, Ruiyuan Xu, Xu-Ning Fan, Lei You, Taiping Zhang, Yupei Zhao
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2021.653474

Identifying ceRNA Networks Associated With the Susceptibility and Persistence of Atrial Fibrillation Through Weighted Gene Co-Expression Network Analysis
Cited by: 6
Author(s): Yaozhong Liu, Na Liu, Fan Bai, Qiming Liu
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2019.00025

LncRNAs GIHCG and SPINT1-AS1 Are Crucial Factors for Pan-Cancer Cells Sensitivity to Lapatinib
Cited by: 20
Author(s): Zhen Xiang, Shuzheng Song, Zhenggang Zhu, Wenhong Sun, Jaron E. Gifts, Sam Q. Sun, Qiushi Shauna Li, Yingyan Yu, Keqin Kathy Li
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13046-019-1372-z

Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancer
Cited by: 61
Author(s): Apostolos Zaravinos, Constantinos Roufas, Majdi Nagara, Beatriz de Lucas, Maria Oblovatskaya, Christodoulos Efstathiades, Christos Dimopoulos, Georgios D. Ayiomamitis
Software Mentions: 6
Published: over 5 years ago

10.1186/s13046-021-02034-1

Immuno-genomic classification of colorectal cancer organoids reveals cancer cells with intrinsic immunogenic properties associated with patient survival
Cited by: 14
Author(s): Eun Jeong Cho, Minsuh Kim, Daum Jo, Jihye Kim, Ji-Hye Oh, Hee Chul Chung, Sun-Hye Lee, Deokhoon Kim, Sung Chun, Jihun Kim, Hyeonjin Lee, Tae Won Kim, Chang Sik Yu, Chang‐Keun Sung, Se Jin Jang
Software Mentions: 6
Published: over 3 years ago

10.1186/s12935-021-01804-3

Prognostic and predictive value of FCER1G in glioma outcomes and response to immunotherapy
Cited by: 11
Author(s): Houshi Xu, Qiangqiang Zhu, Lan Tang, Junkun Jiang, Huiwen Yuan, Anke Zhang, Meiqing Lou
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41422-020-0374-x

Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinoma
Cited by: 155
Author(s): Yu-Pei Chen, Jianhua Yin, Wenfei Li, Han-Jie Li, Dongping Chen, Cuijuan Zhang, Jiawei Lv, Yaqin Wang, Xiaomin Li, Junyan Li, Panpan Zhang, Ying‐Qin Li, Qing‐Mei He, Xiaojing Yang, Yuan Liu, Ling‐Long Tang, Guan-Qun Zhou, Yan‐Ping Mao, Wei Chen, Ke Xiong, Hongbo Zhang, Shida Zhu, Yong Hou, Ying Sun, Michael Dean, Ido Amit, Kui Wu, Dong-Ming Kuang, Guibo Li, Na Liu
Software Mentions: 6
Published: over 4 years ago

10.3389/fmolb.2020.598725

The Integrative Analysis Identifies Three Cancer Subtypes and Stemness Features in Cutaneous Melanoma
Cited by: 1
Author(s): Xiaoran Wang, Qi Wan, Lin Jin, Chengxiu Liu, Chang Liu, Yuanrong Cheng, Zhichong Wang
Software Mentions: 6
Published: almost 4 years ago

10.7150/ijms.61309

Integrated analysis of the molecular mechanisms in idiopathic pulmonary fibrosis
Cited by: 6
Author(s): Ke Zhu, Aiqun Xu, Wanli Xia, Pulin Li, Rui Han, Enze Wang, Sijing Zhou, Ran Wang
Software Mentions: 6
Published: almost 4 years ago

10.1186/1471-2105-14-7

GSVA: gene set variation analysis for microarray and RNA-Seq data
Cited by: 6,480
Author(s): Sonja Hänzelmann, Robert Castelo, Justin Guinney
Software Mentions: 6
Published: almost 12 years ago

10.1038/s41421-020-00200-x

Single-cell transcriptome atlas of lung adenocarcinoma featured with ground glass nodules
Cited by: 45
Author(s): Tao Lu, Xiaodong Yang, Yu Shi, Mengnan Zhao, Guoshu Bi, Jiaqi Liang, Zhencong Chen, Yiwei Huang, Wei Jiang, Lin Zhang, Junjie Xi, Shuai Wang, Yong Yang, Cheng Zhan, Qun Wang, Liang Tan
Software Mentions: 6
Published: about 4 years ago

10.3389/fmolb.2021.615084

Development of a Machine Learning-Based Autophagy-Related lncRNA Signature to Improve Prognosis Prediction in Osteosarcoma Patients
Cited by: 12
Author(s): Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Enhui Ren, Wenhua Yuan, Yajun Deng, Qiqi Xie
Software Mentions: 6
Published: over 3 years ago

10.7150/ijbs.61441

Multi-omics Analysis of Ferroptosis Regulation Patterns and Characterization of Tumor Microenvironment in Patients with Oral Squamous Cell Carcinoma
Cited by: 17
Author(s): Wenchao Gu, Mai Kim, Lei Wang, Zongcheng Yang, Takahito Nakajima, Yoshito Tsushima
Software Mentions: 6
Published: almost 4 years ago

10.7150/ijbs.62553

DDX39 as a predictor of clinical prognosis and immune checkpoint therapy efficacy in patients with clear cell renal cell carcinoma
Cited by: 11
Author(s): Yewei Bao, Aimin Jiang, Kai Dong, Xinxin Gan, Wenliang Gong, Zhenjie Wu, Bing Liu, Yi Bao, Jie Wang, Linhui Wang
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41420-021-00567-0

Single-cell RNA-seq reveals cellular heterogeneity of mouse carotid artery under disturbed flow
Cited by: 22
Author(s): Fengchan Li, Kunmin Yan, Lili Wu, Zhong Zheng, Yinan Du, Ziting Liu, Luyao Zhao, Wei Li, Yulan Sheng, Luping Ren, Chaojun Tang, Li Zhu
Software Mentions: 6
Published: over 3 years ago

10.1111/cns.13701

Establishment of a nomogram with EMP3 for predicting clinical outcomes in patients with glioma: A bi‐center study
Cited by: 5
Author(s): Anke Zhang, Houshi Xu, Zeyu Zhang, Yibo Liu, Xiaying Han, Ling Yuan, Yunjia Ni, Shiqi Gao, Yuanzhi Xu, Sheng Chen, Junkun Jiang, Yike Chen, Xiaotao Zhang, Meiqing Lou, Jianmin Zhang
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.657002

Prognostic Value of Eight-Gene Signature in Head and Neck Squamous Carcinoma
Cited by: 20
Author(s): Baoling Liu, Qiang Su, Jianhua Ma, Cheng Chen, Limin Wang, Fengyuan Che, Xueyuan Heng
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.718644

N6-Methyladenosine Writer Gene ZC3H13 Predicts Immune Phenotype and Therapeutic Opportunities in Kidney Renal Clear Cell Carcinoma
Cited by: 10
Author(s): Tao Guo, Duan Huang, Jinbo Chen, Jinhui Liu, Belaydi Othmane, Jiao Hu, Huihuang Li, Xiongbing Zu
Software Mentions: 6
Published: about 3 years ago

10.7150/ijbs.46645

Identification of a novel cancer stem cell subpopulation that promotes progression of human fatal renal cell carcinoma by single-cell RNA-seq analysis
Cited by: 25
Author(s): Xiuwu Pan, Hao Zhang, Da Xu, Jiaxin Chen, Wen-jin Chen, Sishun Gan, Fajun Qu, Chuanmin Chu, Jun Cao, Yong Fan, Shumin Xu, Jianqing Ye, Zhou Wang, Xingang Cui
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.61461

Phenotypic plasticity underlies local invasion and distant metastasis in colon cancer
Cited by: 29
Author(s): Andrea Sacchetti, Miriam Teeuwssen, Mathijs Verhagen, Rosalie Joosten, Tong Xu, Roberto Stabile, Berdine van der Steen, Martin M. Watson, Alem Gusinac, Won Kyu Kim, Inge Ubink, Harmen J.G. van de Werken, Arianna Fumagalli, Madelon Paauwe, Jacco van Rheenen, Owen J. Sansom, Onno Kranenburg, Riccardo Fodde
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.632430

Genomic Alteration Characterization in Colorectal Cancer Identifies a Prognostic and Metastasis Biomarker: FAM83A|IDO1
Cited by: 29
Author(s): Zaoqu Liu, Yuyuan Zhang, Qin Dang, Kunpeng Wu, Dechao Jiao, Zhen Li, Zhenqiang Sun, Xinwei Han
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.544610

Identification of Four Immune Subtypes in Bladder Cancer Based on Immune Gene Sets
Cited by: 25
Author(s): Chaozhi Tang, Jiakang Ma, Xiuli Liu, Zhengchun Liu
Software Mentions: 6
Published: about 4 years ago

10.3389/fcell.2021.641629

Dysregulation of miR-138-5p/RPS6KA1-AP2M1 Is Associated With Poor Prognosis in AML
Cited by: 10
Author(s): Donghu Yu, Chen Chen, Xiaoping Li, Jie Yao, Sheng Li, Xiaolan Ruan
Software Mentions: 6
Published: over 3 years ago

10.3389/fcell.2021.681431

Comprehensive Transcriptomic Analysis Reveals Prognostic Value of an EMT-Related Gene Signature in Colorectal Cancer
Cited by: 5
Author(s): Shaobo Mo, Weixing Dai, Zheng Zhou, Ruiqi Gu, Yaqi Li, Wenqiang Xiang, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai, Sanjun Cai, Lu Gan, Qingguo Li
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2020.572708

Hematopoietic Gene Expression Regulation Through m6A Methylation Predicts Prognosis in Stage III Colorectal Cancer
Cited by: 1
Author(s): Zheng Zhou, Shaobo Mo, Ruiqi Gu, Weixing Dai, Xinhui Zou, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai
Software Mentions: 6
Published: about 4 years ago

10.1155/2021/8842105

Comparison of the Fatty Acid Metabolism Pathway in Pan-Renal Cell Carcinoma: Evidence from Bioinformatics
Cited by: 1
Author(s): Ping Wu, Yingkun Xu, Jiayi Li, Xiaowei Li, Peizhi Zhang, Ningke Ruan, Cong Zhang, Panpan Sun, Qifei Wang, Guangzhen Wu
Software Mentions: 6
Published: over 3 years ago

10.1042/BSR20204037

Identification of survival-related alternative splicing signatures in acute myeloid leukemia
Cited by: 5
Author(s): Biyu Zhang, Lei Yang, Xin Wang, Denggang Fu
Software Mentions: 6
Published: over 3 years ago

10.3390/cancers11101610

The Epithelial to Mesenchymal Transition Promotes Glutamine Independence by Suppressing GLS2 Expression
Cited by: 27
Author(s): Esmeralda Ramirez-Peña, James M. Arnold, Vinita Shivakumar, Robiya Joseph, Geraldine V. Vijay, Petra den Hollander, Neeraja Bhangre, Paul Allegakoen, Rishika Prasad, Zachary Conley, José M. Matés, Javier Márquez, Jeffrey T. Chang, Suhas Vasaikar, Rama Soundararajan, Arun Sreekumar, Sendurai A. Mani
Software Mentions: 6
Published: about 5 years ago

10.3389/fmolb.2020.608368

Identification and Development of a Novel 4-Gene Immune-Related Signature to Predict Osteosarcoma Prognosis
Cited by: 12
Author(s): Mingde Cao, Junhui Zhang, Haiyan Xu, Zhujian Lin, Hong Chang, Yuchen Wang, Xusheng Huang, Xiang Chen, Hua Wang, Yancheng Song
Software Mentions: 6
Published: almost 4 years ago

10.18632/aging.202182

KRAS mutations are negatively correlated with immunity in colon cancer
Cited by: 8
Author(s): Xiaorui Fu, Xinyi Wang, Jinzhong Duanmu, Taiyuan Li, Qunguang Jiang
Software Mentions: 6
Published: almost 4 years ago

10.3390/cancers13092248

Claudin-Low Breast Cancer Inflammatory Signatures Support Polarization of M1-Like Macrophages with Protumoral Activity
Cited by: 7
Author(s): Mayra C. Suárez-Arriaga, Alfonso Méndez‐Tenorio, Vadim Pérez‐Koldenkova, Ezequiel M. Fuentes‐Pananá
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2021.701065

Identification of Tumor Antigens and Immune Landscape in Glioblastoma for mRNA Vaccine Development
Cited by: 12
Author(s): Liguo Ye, Long Wang, Jian Yang, Ping Hu, Chunyu Zhang, Shiao Tong, Zhennan Liu, Daofeng Tian
Software Mentions: 6
Published: about 3 years ago

10.3389/fcell.2021.724837

Integrative Analysis of m6A Regulator-Mediated RNA Methylation Modification Patterns and Immune Characteristics in Lupus Nephritis
Cited by: 14
Author(s): Huanhuan Zhao, Shaokang Pan, Jiayu Duan, Fengxun Liu, Guangpu Li, Dongwei Li, Zhangsuo Liu
Software Mentions: 6
Published: about 3 years ago

10.3389/fcell.2021.686909

Multi-Omics Data Integration Analysis of an Immune-Related Gene Signature in LGG Patients With Epilepsy
Cited by: 13
Author(s): Quan Cheng, Weiwei Duan, Shiqing He, Chen Li, Hui Cao, Kun Liu, Weijie Ye, Bo Yuan, Zhiwei Xia
Software Mentions: 6
Published: over 3 years ago

10.3389/fonc.2021.715552

Single-Cell RNA Sequencing Reveals the Migration of Osteoclasts in Giant Cell Tumor of Bone
Cited by: 14
Author(s): Wei Feng, Mingwei He, Xiaohong Jiang, Huijiang Liu, Tianyu Xie, Zhaojie Qin, Qian Huang, Shijie Liao, Chengsen Lin, Jun He, Jiake Xu, Jie Ma, Yun Liu, Qingjun Wei
Software Mentions: 6
Published: about 3 years ago

10.1038/s41392-021-00745-7

Melatonin enhances radiofrequency-induced NK antitumor immunity, causing cancer metabolism reprogramming and inhibition of multiple pulmonary tumor development
Cited by: 19
Author(s): Ming Li, Bingjie Hao, Menghuan Zhang, Russel J. Reíter, Shumeng Lin, Tiansheng Zheng, Xiangyun Chen, Yanru Ren, Liduo Yue, Аbay Baigenzhin, Guojie Chen, Xiao Xu, Yufeng Shi, Lihong Fan
Software Mentions: 6
Published: about 3 years ago

10.3390/cancers12103054

A Methylation-Based Reclassification of Bladder Cancer Based on Immune Cell Genes
Cited by: 26
Author(s): Qizhan Luo, Thomas-Alexander Vögeli
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0222552

Systems biology analysis of publicly available transcriptomic data reveals a critical link between AKR1B10 gene expression, smoking and occurrence of lung cancer
Cited by: 8
Author(s): J Carlos Angulo, Eduardo R. Fukutani, Luís A. B. Cruz, María B. Arriaga, João Victor Lima, Bruno B. Andrade, Artur T. L. Queiroz, Kiyoshi F. Fukutani
Software Mentions: 5
Published: over 4 years ago

10.18632/aging.102923

Integrative analysis of DNA methylation and gene expression reveals distinct hepatocellular carcinoma subtypes with therapeutic implications
Cited by: 10
Author(s): Xiaowen Huang, Chen Yang, Jilin Wang, Tiantian Sun, Hua Xiong
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0203672

Integrating the skin and blood transcriptomes and serum proteome in hidradenitis suppurativa reveals complement dysregulation and a plasma cell signature
Cited by: 65
Author(s): Lauren Hoffman, Lewis Tomalin, Gregory S. Schultz, Michael D. Howell, Niroshana Anandasabapathy, Afsáneh Alavi, Mayte Suárez‐Fariñas, Michelle A. Lowes
Software Mentions: 5
Published: about 6 years ago

10.1155/2020/3813546

Identification and Validation of a Potential Prognostic 7-lncRNA Signature for Predicting Survival in Patients with Multiple Myeloma
Cited by: 6
Author(s): Yun Zhong, Zhe Liu, Dangchi Li, Qinyuan Liao, Jingao Li
Software Mentions: 5
Published: about 4 years ago

10.18632/aging.102706

Elevated lymphocyte specific protein 1 expression is involved in the regulation of leukocyte migration and immunosuppressive microenvironment in glioblastoma
Cited by: 16
Author(s): Ji Cao, Qing Guo, Gefei Guan, Chen Zhu, Cunyi Zou, Luyang Zhang, Wen Cheng, Guoli Wang, Cheng Peng, Anhua Wu, Guangyu Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fonc.2020.00769

Dysregulated m6A-Related Regulators Are Associated With Tumor Metastasis and Poor Prognosis in Osteosarcoma
Cited by: 54
Author(s): Jianhao Li, Benchen Rao, Jie Yang, Liwen Liu, Mengling Huang, Xin Liu, Guangying Cui, Chao Li, Qicai Han, Hao Yang, Xichun Cui, Ranran Sun
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2020.586019

Three Immune-Associated Subtypes of Diffuse Glioma Differ in Immune Infiltration, Immune Checkpoint Molecules, and Prognosis
Cited by: 19
Author(s): Quanwei Zhou, Xuejun Yan, Weidong Liu, Yin Wu, Hongjuan Xu, Damei Cheng, Xingjun Jiang, Chao Ren
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-66806-z

CD96, a new immune checkpoint, correlates with immune profile and clinical outcome of glioma
Cited by: 26
Author(s): Fangkun Liu, Jing Huang, Fengjiao He, Xiaodong Ma, Fan Fan, Ming Meng, Zhuo Yang, Jintao Zhang
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-86002-x

Comprehensive transcriptomic analysis of COVID-19 blood, lung, and airway
Cited by: 102
Author(s): Andrea R. Daamen, Prathyusha Bachali, Katherine A. Owen, Kathryn M. Kingsmore, Erika L. Hubbard, Adam C. Labonte, Robert Robl, Sneha Shrotri, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 5
Published: over 3 years ago

10.1002/advs.201902880

ImmuCellAI: A Unique Method for Comprehensive T‐Cell Subsets Abundance Prediction and its Application in Cancer Immunotherapy
Cited by: 479
Author(s): Ya-Ru Miao, Qiong Zhang, Qian Lei, Mei Luo, Gui-Yan Xie, Hongxiang Wang, An‐Yuan Guo
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-86294-z

Development of a novel transcription factors-related prognostic signature for serous ovarian cancer
Cited by: 5
Author(s): Lei He, Nayiyuan Wu, Zhaoyi Liu, Yongchang Chen, Quan Cheng, Jing Wang
Software Mentions: 5
Published: over 3 years ago

10.3390/jcm9092730

Metastatic Burden Defines Clinically and Biologically Distinct Subgroups of Stage 4 High-Risk Neuroblastoma
Cited by: 2
Author(s): Eun Seop Seo, Eun-Jin Lee, Boram Lee, Min Jae Shin, Young-Seok Cho, Hee Young Ju, Hee Won Cho, Hee Young Ju, Keon Hee Yoo, Hong Hoe Koo, Ji Won Lee, Ki Woong Sung
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.ppat.1008869

Macrophage maturation from blood monocytes is altered in people with HIV, and is linked to serum lipid profiles and activation indices: A model for studying atherogenic mechanisms
Cited by: 16
Author(s): Emily Bowman, Cheryl M. Cameron, Brian Richardson, Milind V. Kulkarni, Janelle Gabriel, Morgan J. Cichon, Ken M. Riedl, Yousef Mustafa, Michael Cartwright, Brandon Snyder, Subha V. Raman, David A. Zidar, Susan L. Koletar, Martin P. Playford, Nehal N. Mehta, Scott F. Sieg, Michael L. Freeman, Michael M. Lederman, Mark J. Cameron, Nicholas T. Funderburg
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.11433

Analysis of multi-omics differences in left-side and right-side colon cancer
Cited by: 7
Author(s): Yanyi Huang, Jinzhong Duanmu, Yushu Liu, Mengyun Yan, Taiyuan Li, Qunguang Jiang
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.9422

An RNA-sequencing-based transcriptome for a significantly prognostic novel driver signature identification in bladder urothelial carcinoma
Cited by: 6
Author(s): Danqi Liu, Boting Zhou, Rangru Liu
Software Mentions: 5
Published: over 4 years ago

10.1111/jcmm.16366

ARL4C might serve as a prognostic factor and a novel therapeutic target for gastric cancer: bioinformatics analyses and biological experiments
Cited by: 7
Author(s): Ning Xie, Yongping Bai, Qiao Liao, Yuxiang Bai, Jian Wu, Yan Li, Mingzuo Jiang, Bing Xu, Ni Zhen, Ting Yuan, Yongquan Shi, Kaijie Wu, Feng Xu, Jinhai Wang, Dong Liu, Na Liu
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.11494

The landscape of tumors-infiltrate immune cells in papillary thyroid carcinoma and its prognostic value
Cited by: 2
Author(s): Yanyi Huang, Tao Yi, Yushu Liu, Mengyun Yan, Xinli Peng, Yunxia Lv
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2021.637193

Oncogenic B-Myb Is Associated With Deregulation of the DREAM-Mediated Cell Cycle Gene Expression Program in High Grade Serous Ovarian Carcinoma Clinical Tumor Samples
Cited by: 5
Author(s): Audra N. Iness, Lisa Rubinsak, Steven J. Meas, Jessica Chaoul, Sadia Sayeed, Raghavendra Pillappa, Sarah M. Temkin, Mikhail G. Dozmorov, Larisa Litovchick
Software Mentions: 5
Published: over 3 years ago

10.1186/s12957-021-02367-3

Comprehensive analysis of angiogenesis subtype of squamous cell carcinoma
Cited by: 3
Author(s): Fanglu Qin, Sheng-hua Lin, Kun Deng, Junqi Qin, Zhanyu Xu, Liqiang Yuan, Jiangbo Wei, Yu Sun, Tiaozhan Zheng, Shikang Li
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2021.649093

Development and Validation of Epigenetic Modification-Related Signals for the Diagnosis and Prognosis of Hepatocellular Carcinoma
Cited by: 5
Author(s): Maoqing Lu, Qing Sheng, Xupin Jiang, Diguang Wen, Ronggui Zhang, Zuojin Liu
Software Mentions: 5
Published: over 3 years ago

10.1111/jcmm.15517

Carboxypeptidase A6 was identified and validated as a novel potential biomarker for predicting the occurrence of active ulcerative colitis
Cited by: 3
Author(s): Haizhou Wang, Meng Zhang, Mengna Zhang, Fan Wang, Jing Liu, Qiu Zhao
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.711348

Characterization of Molecular Subtypes in Head and Neck Squamous Cell Carcinoma With Distinct Prognosis and Treatment Responsiveness
Cited by: 10
Author(s): Pei Zhang, Shue Li, Tingting Zhang, Fengzhen Cui, Jihua Shi, Fengbo Zhao, Xia Sheng
Software Mentions: 5
Published: about 3 years ago

10.1186/s12864-015-2188-7

Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples
Cited by: 16
Author(s): Xiangtian Yu, Tao Zeng, Guojun Li
Software Mentions: 5
Published: about 9 years ago

10.3389/fgene.2016.00080

Recursive Indirect-Paths Modularity (RIP-M) for Detecting Community Structure in RNA-Seq Co-expression Networks
Cited by: 12
Author(s): Bahareh Rahmani, Michael T. Zimmermann, Diane E. Grill, Richard B. Kennedy, Ann L. Oberg, Bill C. White, Gregory A. Poland, Brett A. McKinney
Software Mentions: 5
Published: over 8 years ago

10.3389/fcell.2021.662707

PLXNC1: A Novel Potential Immune-Related Target for Stomach Adenocarcinoma
Cited by: 12
Author(s): Zhizhan Ni, Chenshen Huang, Hongmei Zhao, Jinzhe Zhou, Muren Hu, Qing Chen, Bujun Ge, Qi Huang
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2021.650416

Ferroptosis-Related Gene-Based Prognostic Model and Immune Infiltration in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Guojiang Zhao, Zonglong Wu, Liyuan Ge, Fusheng Yang, Kai Hong, Shudong Zhang, Lulin Ma
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2021.721252

Antioxidant Gene Signature Impacts the Immune Infiltration and Predicts the Prognosis of Kidney Renal Clear Cell Carcinoma
Cited by: 11
Author(s): Xueting Ren, Li Ma, Nan Wang, Ruina Zhou, Jianhua Wu, Xin Xie, Hao Zhang, Di Liu, Xiuli Ma, Chengxue Dang, Huafeng Kang, Zhangjian Zhou
Software Mentions: 5
Published: over 3 years ago

10.1186/s12864-015-1532-2

Pathway reporter genes define molecular phenotypes of human cells
Cited by: 24
Author(s): Jitao David Zhang, Erich Küng, Franziska Boess, Ulrich Certa, Martin Ebeling
Software Mentions: 5
Published: over 9 years ago

10.3389/fcell.2020.593653

PECAM1 Combines With CXCR4 to Trigger Inflammatory Cell Infiltration and Pulpitis Progression Through Activating the NF-κB Signaling Pathway
Cited by: 10
Author(s): Liu Yong-hong, Zhiyong Zhang, Wenjing Li, Shaomin Tian
Software Mentions: 5
Published: almost 4 years ago

10.3389/fcell.2021.696878

Classification of Osteosarcoma Based on Immunogenomic Profiling
Cited by: 14
Author(s): Xinwen Wang, Liangming Wang, Weifeng Xu, Xinwu Wang, Dianshan Ke, Jiumao Lin, Wanzun Lin, Xiaochun Bai
Software Mentions: 5
Published: over 3 years ago

10.1002/1878-0261.12706

Ribonucleotide reductase small subunit M2 is a master driver of aggressive prostate cancer
Cited by: 17
Author(s): Ying Z. Mazzu, Joshua Armenia, Subhiksha Nandakumar, Goutam Chakraborty, Yuki Yoshikawa, Lina Jehane, Gwo‐Shu Mary Lee, Mohammad Atiq, Nabeela Khan, Nikolaus Schultz, Philip W. Kantoff
Software Mentions: 5
Published: over 4 years ago

10.1111/jcmm.15205

Characterization of the relationship between FLI1 and immune infiltrate level in tumour immune microenvironment for breast cancer
Cited by: 14
Author(s): Shiyuan Wang, Yakun Wang, Changhong Yu, Yiyin Cao, Yao Yu, Yi Pan, Dongqing Su, Qianzi Lu, Weihao Yang, Yongchun Zuo, Lei Yang
Software Mentions: 5
Published: over 4 years ago

10.1111/jcmm.16469

m6A regulator‐mediated RNA methylation modification patterns are involved in immune microenvironment regulation of periodontitis
Cited by: 57
Author(s): Xiaoqi Zhang, Shizhen Zhang, Xinyu Yan, Yue Shan, Ling Lü, Jing Zhou, Qianyun Kuang, Minqi Li, Hu Long, Wenli Lai
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.634697

A Combined Two-mRNA Signature Associated With PD-L1 and Tumor Mutational Burden for Prognosis of Lung Adenocarcinoma
Cited by: 12
Author(s): Congkuan Song, Zhi‐Quan Wu, Qingwen Wang, Yujin Wang, Zixin Guo, Sheng Li, Weidong Hu
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13073-021-00956-1

De novo transcriptomic subtyping of colorectal cancer liver metastases in the context of tumor heterogeneity
Cited by: 8
Author(s): Seyed H. Moosavi, Peter W. Eide, Ina A. Eilertsen, Tuva H. Brunsell, Kaja Christine Graue Berg, Bård I. Røsok, Kristoffer Watten Brudvik, Bjørn Atle Bjørnbeth, Marianne Grønlie Guren, Arild Nesbakken, Ragnhild A. Lothe, Anita Sveen
Software Mentions: 5
Published: about 3 years ago

Projects: bioconductor: GSVA

Papers Mentioning GSVA 893