bioconductor: GSVA | Projects | Ecosyste.ms: Papers

10.1002/1878-0261.12053

Inhibitors of STAT3, β-catenin, and IGF-1R sensitize mouse PIK3CA-mutant breast cancer to PI3K inhibitors
Cited by: 18
Author(s): Vanessa F. Merino, Soonweng Cho, Xiaohui Liang, Sunju Park, Kideok Jin, Qian Chen, Duojia Pan, Cynthia A. Zahnow, Alan Rein, Saraswati Sukumar
Software Mentions: 2
Published: about 7 years ago

10.1186/s12957-020-02070-9

Follistatin-like 1 (FSTL1) is a prognostic biomarker and correlated with immune cell infiltration in gastric cancer
Cited by: 13
Author(s): Li Li, Shanshan Huang, Yangyang Yao, Jun Chen, Junhe Li, Xiaojun Xiang, Jun Deng, Jianping Xiong
Software Mentions: 2
Published: over 3 years ago

10.1186/1479-5876-11-100

BMP4, a strong better prognosis predictor, has a subtype preference and cell development association in gliomas
Cited by: 35
Author(s): Zhaoshi Bao, Chuanbao Zhang, Wei Yan, Yanwei Liu, Mingyang Li, Wei Zhang, Tao Jiang
Software Mentions: 2
Published: about 11 years ago

10.15252/emmm.202113936

Bacterial lysis, autophagy and innate immune responses during adjunctive phage therapy in a child
Cited by: 30
Author(s): Ameneh Khatami, Ruby C.Y. Lin, Aleksandra Petrovic-Fabijan, Sivan Alkalay-Oren, Sulaiman Almuzam, Philip N Britton, Michael J. Brownstein, Quang Dao, Joe Fackler, Ronen Hazan, Bri’Anna Horne, Ran Nir-Paz, Jonathan R. Iredell
Software Mentions: 2
Published: almost 3 years ago

10.1186/s40425-018-0355-5

Immune oncology, immune responsiveness and the theory of everything
Cited by: 53
Author(s): Tolga Turan, Deepti Kannan, Maulik Patel, J. Matthew Barnes, Sonia G. Tanlimco, Rongze Lu, Kyle Halliwill, Sarah Kongpachith, Douglas E. Kline, Wouter Hendrickx, Alessandra Cesano, Lisa H. Butterfield, Howard L. Kaufman, Thomas J. Hudson, Davide Bedognetti, Francesco M. Marincola, Josue Samayoa
Software Mentions: 2
Published: almost 6 years ago

10.1530/ERC-19-0488

p300 is upregulated by docetaxel and is a target in chemoresistant prostate cancer
Cited by: 16
Author(s): Martina Gruber, Lavinia Ferrone, Martin Puhr, Frédéric R. Santer, Tobias Furlan, Iris E. Eder, Natalie Sampson, Georg Schäfer, Florian Handle, Zoran Čulig
Software Mentions: 2
Published: about 4 years ago

10.18632/aging.102205

Long non-coding RNA, HOTAIRM1, promotes glioma malignancy by forming a ceRNA network
Cited by: 34
Author(s): Qingyu Liang, Xue Li, Gefei Guan, Xiaowu Xu, Chen Chen, Cheng Peng, Wen Cheng, Anhua Wu
Software Mentions: 2
Published: over 4 years ago

10.1186/s40425-019-0755-1

Metastatic breast cancers have reduced immune cell recruitment but harbor increased macrophages relative to their matched primary tumors
Cited by: 58
Author(s): Li Zhu, Jessica L. Narloch, Sayali Onkar, Marion Joy, Gloria Broadwater, Catherine Luedke, Allison Hall, Rim Kim, Katherine L. Pogue–Geile, Sarah Sammons, Naema Nayyar, Ugonma Chukwueke, Priscilla K. Brastianos, Carey K. Anders, Adam C. Soloff, Dario A.A. Vignali, George C. Tseng, Leisha A. Emens, Peter C. Lucas, Kimberly Blackwell, Steffi Oesterreich, Adrian V. Lee
Software Mentions: 2
Published: over 4 years ago

10.1186/s12964-021-00754-7

Single-cell analysis reveals cell communication triggered by macrophages associated with the reduction and exhaustion of CD8+ T cells in COVID-19
Cited by: 15
Author(s): Lei He, Quan Zhang, Yue Zhang, Yixian Fan, Fahu Yuan, Songming Li
Software Mentions: 2
Published: almost 3 years ago

10.3389/fimmu.2020.588552

PD-L1-Mediated Immunosuppression in Glioblastoma Is Associated With the Infiltration and M2-Polarization of Tumor-Associated Macrophages
Cited by: 68
Author(s): Zhiyuan Zhu, Hongbo Zhang, Baodong Chen, Xing Liu, Shizhong Zhang, Zhitao Zong, Mengqi Gao
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/5618786

Inflammation Is Associated with Worse Outcome in the Whole Cohort but with Better Outcome in Triple-Negative Subtype of Breast Cancer Patients
Cited by: 31
Author(s): Masanori Oshi, Stephanie Newman, Yoshihisa Tokumaru, Li Yan, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.725223

A Robust Hypoxia Risk Score Predicts the Clinical Outcomes and Tumor Microenvironment Immune Characters in Bladder Cancer
Cited by: 21
Author(s): Zhi Li, Qinglin Tang, Tiezheng Qi, Belaydi Othmane, Zichang Yang, Jinbo Chen, Jiao Hu, Xiongbing Zu
Software Mentions: 2
Published: almost 3 years ago

10.3389/fcell.2020.588299

Curcumin-Induced Global Profiling of Transcriptomes in Small Cell Lung Cancer Cells
Cited by: 6
Author(s): Fei Mo, Yu Xiao, Hao Zeng, Dingqiang Fan, Jing Song, Fei Liu, Meng Luo, Xuelei Ma
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.693881

PD-L1-Mediated Immunosuppression in Oral Squamous Cell Carcinoma: Relationship With Macrophage Infiltration and Epithelial to Mesenchymal Transition Markers
Cited by: 14
Author(s): Tiantian Wu, Caijin Tang, Renchuan Tao, Xiangzhi Yong, Qiaozhi Jiang, Cong Feng
Software Mentions: 2
Published: over 2 years ago

10.3389/fgene.2020.573124

Increased NFATC4 Correlates With Poor Prognosis of AML Through Recruiting Regulatory T Cells
Cited by: 6
Author(s): Chong Zhao, Siqi Yang, Wei Lü, Jiali Liu, Yanyu Wei, Hong Guo, Yanjie Zhang, Jun Shi
Software Mentions: 2
Published: over 3 years ago

10.1038/s41389-019-0141-3

Transcriptional and functional consequences of TP53 splice mutations in colorectal cancer
Cited by: 17
Author(s): Jørgen Smeby, Anita Sveen, Ina A. Eilertsen, Stine A. Danielsen, Andreas Hoff, Peter Andreas Wold Eide, Bjarne Johannessen, Merete Hektoen, Rolf Inge Skotheim, Marianne G. Guren, Arild Nesbakken, Ragnhild Lothe
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.586415

Functional and Clinical Characterization of Tumor-Infiltrating T Cell Subpopulations in Hepatocellular Carcinoma
Cited by: 7
Author(s): Jianguo Li, Jin Zhang, Shuangshuang Kai, Can Wang, Daijun Wang, Jiying Jiang
Software Mentions: 2
Published: over 3 years ago

10.1002/jia2.25717

Early ART initiation during infancy preserves natural killer cells in young European adolescents living with HIV (CARMA cohort)
Cited by: 6
Author(s): Margherita Doria, Sonia Zicari, Nicola Cotugno, Sara Domínguez‐Rodríguez, Alessandra Ruggiero, Giuseppe Rubens Pascucci, Alfredo Tagarro, Pablo Rojo, Eleni Nastouli, Kathleen Gärtner, Mark J. Cameron, Brian Richardson, Caroline Foster, Siôn L. Williams, Stefano Rinaldi, Anita De Rossi, Carlo Giaquinto, Paolo Rossi, Savita Pahwa, Paolo Palma
Software Mentions: 2
Published: almost 3 years ago

10.1038/s41419-019-1515-3

CADM1 is a TWIST1-regulated suppressor of invasion and survival
Cited by: 29
Author(s): Edward J. Hartsough, Michele B. Weiss, Shea A. Heilman, Timothy J. Purwin, Curtis H. Kugel, Sheera Rosenbaum, Dan A. Erkes, Manoela Tiago, Kim HooKim, Inna Chervoneva, Andrew E. Aplin
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.01002

Identification of an Immune-Related Prognostic Signature Associated With Immune Infiltration in Melanoma
Cited by: 13
Author(s): Nian Liu, Zijian Liu, Xinxin Liu, Xiaoru Duan, Yongjun Huang, Zhao-Hui Jin, Yi Niu, Liling Zhang, Hongxiang Chen
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.104090

Development and validation of a nomogram with an epigenetic signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jiao Wang, Lei He, Yunliang Tang, Dan Li, Yuting Yang, Zhenguo Zeng
Software Mentions: 2
Published: over 3 years ago

10.3389/fcell.2020.566494

Glycogen Phosphorylase B Is Regulated by miR101-3p and Promotes Hepatocellular Carcinoma Tumorigenesis
Cited by: 16
Author(s): Guangying Cui, Huifen Wang, Wenli Liu, Jiyuan Xing, Wengang Song, Zhaohai Zeng, Liwen Liu, Hai‐Yu Wang, Xuemei Wang, Hong Luo, Xiaoyang Leng, Shen Shen
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-020-02839-6

ARNTL2 promotes pancreatic ductal adenocarcinoma progression through TGF/BETA pathway and is regulated by miR-26a-5p
Cited by: 21
Author(s): Zhifang Wang, Tingting Liu, Wenhua Xue, Yuanyuan Fang, Xiaolong Chen, Lijun Xu, Lixia Zhang, Kelei Guan, Juntao Pan, Lili Zheng, Guijun Qin, Tingting Wang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12974-018-1187-4

Molecular and clinical characterization of PTPN2 expression from RNA-seq data of 996 brain gliomas
Cited by: 15
Author(s): Pengfei Wang, Hong‐Qing Cai, Chuanbao Zhang, Yan-Michael Li, Xiang Liu, Jinghai Wan, Tao Jiang, Shouwei Li, Yan Chen
Software Mentions: 2
Published: about 6 years ago

10.1186/s12974-021-02153-8

Conditional knockout of Tsc1 in RORγt-expressing cells induces brain damage and early death in mice
Cited by: 2
Author(s): Yafei Deng, Qinglan Yang, Yang Yao, Yana Li, Hongyan Peng, Shu‐Lin Wu, Shuju Zhang, Baige Yao, Shuhui Li, Yuan Gao, Xiaohui Li, Liping Li, Youcai Deng
Software Mentions: 2
Published: about 3 years ago

10.3390/ijms221910287

Cilostazol Induces eNOS and TM Expression via Activation with Sirtuin 1/Krüppel-like Factor 2 Pathway in Endothelial Cells
Cited by: 4
Author(s): Ching Hsiang Wu, Yi-Lin Chiu, Chung-Yueh Hsieh, Guo-Shiang Tsung, Lian-Shan Wu, Cheng-Chung Cheng, Tsung-Neng Tsai
Software Mentions: 2
Published: over 2 years ago

10.1111/cpr.12768

Cross talk between RNA N6‐methyladenosine methyltransferase‐like 3 and miR‐186 regulates hepatoblastoma progression through Wnt/β‐catenin signalling pathway
Cited by: 71
Author(s): Xichun Cui, Zhifang Wang, Jianhao Li, Jianming Zhu, Zhigang Ren, Dandan Zhang, Wei Zhao, Yi Fan, Da Zhang, Ranran Sun
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2020.614139

Immune Characterization of Ovarian Cancer Reveals New Cell Subtypes With Different Prognoses, Immune Risks, and Molecular Mechanisms
Cited by: 8
Author(s): Shanshan Cong, Qiuyan Guo, Yan Cheng, Yanan He, Xibo Zhao, Chunli Kong, Shangwei Ning, Guangmei Zhang
Software Mentions: 2
Published: over 3 years ago

10.1016/j.celrep.2021.109181

PD-L1 recruits phospholipase C and enhances tumorigenicity of lung tumors harboring mutant forms of EGFR
Cited by: 24
Author(s): Soma Ghosh, Nishanth Belugali Nataraj, Ashish Noronha, Sushant Patkar, Arunachalam Sekar, Saptaparna Mukherjee, Sabina Winograd‐Katz, Lior Kramarski, Aakanksha Verma, Moshit Lindzen, Diana Drago-García, Joseph Green, Galit Eisenberg, Hava Gil-Henn, Arkaprabha Basu, Yan Lender, Shimon Weiss, Moshe Oren, Michal Lotem, Benjamin Geiger, Eytan Ruppin, Yosef Yarden
Software Mentions: 2
Published: about 3 years ago

10.3390/cancers13092094

Gene Regulation Network Analysis on Human Prostate Orthografts Highlights a Potential Role for the JMJD6 Regulon in Clinical Prostate Cancer
Cited by: 7
Author(s): Mario Cangiano, Magda Grudniewska, Mark J. Salji, Matti Nykter, Guido Jenster, Alfonso Urbanucci, Zoraide Granchi, Bart Janssen, Graham Hamilton, Hing Y. Leung, Inès J. Beumer
Software Mentions: 2
Published: about 3 years ago

10.3390/cancers12123760

MEK1 Inhibitor Combined with Irradiation Reduces Migration of Breast Cancer Cells Including miR-221 and ZEB1 EMT Marker Expression
Cited by: 7
Author(s): Nataša Anastasov, Elisabeth Hirmer, Marbod Klenner, Jessica Ott, Natalie Falkenberg, Xuanwen Bao, Lisa Mutschelknaus, Simone Moertl, Stephanie E. Combs, Michael J. Atkinson, Thomas E. Schmid
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2019.00850

lncRNA OSTN-AS1 May Represent a Novel Immune-Related Prognostic Marker for Triple-Negative Breast Cancer Based on Integrated Analysis of a ceRNA Network
Cited by: 40
Author(s): Zijian Liu, Mi Mi, Xiaoqian Li, Xin Zheng, Gang Wu, Liling Zhang
Software Mentions: 2
Published: over 4 years ago

10.3390/cells10030653

Annexin A1 Expression Is Associated with Epithelial–Mesenchymal Transition (EMT), Cell Proliferation, Prognosis, and Drug Response in Pancreatic Cancer
Cited by: 30
Author(s): Masanori Oshi, Yoshihisa Tokumaru, Swagoto Mukhopadhyay, Li Yan, Ryusei Matsuyama, Itaru Endo, Kazuaki Takabe
Software Mentions: 2
Published: about 3 years ago

10.3389/fcell.2021.714271

Single Cell RNA-Sequencing Reveals a Murine Gallbladder Cell Transcriptome Atlas During the Process of Cholesterol Gallstone Formation
Cited by: 2
Author(s): Jingjia Liang, Wentao Shao, Qian Liu, Qishao Lu, Aihua Gu, Zhaoyan Jiang
Software Mentions: 2
Published: over 2 years ago

10.7150/jca.40866

Expression Status And Prognostic Value Of M6A-associated Genes in Gastric Cancer
Cited by: 65
Author(s): Kelei Guan, Xin Liu, Jianhao Li, Yi Ding, Juan Li, Guangying Cui, Xichun Cui, Ranran Sun
Software Mentions: 2
Published: over 4 years ago

10.1016/j.jbc.2021.101096

Bidirectional epithelial–mesenchymal crosstalk provides self-sustaining profibrotic signals in pulmonary fibrosis
Cited by: 18
Author(s): Liudi Yao, Yilu Zhou, Juanjuan Li, Leanne Wickens, Franco Conforti, Anna Rattu, Fathima Maneesha Ibrahim, Aiman Alzetani, Ben G Marshall, Sophie Fletcher, David C. Hancock, Tim Wallis, Julian Downward, Rob M. Ewing, Luca Richeldi, Paul Skipp, Donna E. Davies, Mark G. Jones, Yihua Wang
Software Mentions: 2
Published: over 2 years ago

10.3389/fgene.2021.737965

Identification of Mutation Landscape and Immune Cell Component for Liver Hepatocellular Carcinoma Highlights Potential Therapeutic Targets and Prognostic Markers
Cited by: 4
Author(s): Hengzhen Wang, Wenjing Jiang, Haijun Wang, Zheng Wei, Hali Li, Haichao Yan, Peng Han
Software Mentions: 2
Published: over 2 years ago

10.7150/jca.52454

Circadian rhythm-associated clinical relevance and Tumor Microenvironment of Non-small Cell Lung Cancer
Cited by: 14
Author(s): Ming Li, Zhencong Chen, Tian Jiang, Xiaodong Yang, You Wei Du, Jiaqi Liang, Lin Wang, Junjie Xi, Miao Lin, Mingxiang Feng
Software Mentions: 2
Published: over 3 years ago

10.1186/s12967-021-03004-z

Bcl-2-associated transcription factor 1 Ser290 phosphorylation mediates DNA damage response and regulates radiosensitivity in gastric cancer
Cited by: 8
Author(s): Jia Liu, Jingyi Li, Zhao Sun, Yuwei Duan, Fengqin Wang, Guangwei Wei, Jinghua Yang
Software Mentions: 2
Published: almost 3 years ago

10.1186/s12885-019-6339-0

Comparative transcriptome analysis of matched primary and distant metastatic ovarian carcinoma
Cited by: 14
Author(s): Hanna Sallinen, Sirpa Janhonen, Petri Pölönen, Henri Niskanen, O. H. Liu, Annukka M. Kivelä, Jaana M. Hartikainen, Markku Anttila, Merja Heinäniemi, Seppo Ylä‐Herttuala, Minna U. Kaikkonen
Software Mentions: 2
Published: over 4 years ago

10.7150/jca.57752

miR-30a/SOX4 Double Negative Feedback Loop is modulated by Disulfiram and regulates EMT and Stem Cell-like properties in Breast Cancer
Cited by: 5
Author(s): Zijian Liu, Mi Mi, Xin Zheng, Caijiao Zhang, Fang Zhu, Tao Liu, Gang Wu, Liling Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-020-03791-0

Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models
Cited by: 5
Author(s): Xingyu Zheng, Christopher I. Amos, H. Robert Frost
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-018-2476-8

A multi-omics approach for identifying important pathways and genes in human cancer
Cited by: 13
Author(s): H. Robert Frost, Christopher I. Amos
Software Mentions: 2
Published: over 5 years ago

10.1172/jci.insight.139237

Selective inhibition of mTORC1 in tumor vessels increases antitumor immunity
Cited by: 11
Author(s): Shan Wang, Ariel Raybuck, Eileen Shiuan, Sung Hoon Cho, Qingfei Wang, Dana M. Brantley-Sieders, Deanna N. Edwards, Margaret M. Allaman, James A. Nathan, Keith T. Wilson, David G. DeNardo, Siyuan Zhang, Rebecca S. Cook, Mark Boothby, Jin Chen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12967-020-02460-3

Clinical characterization, genetic profiling, and immune infiltration of TOX in diffuse gliomas
Cited by: 12
Author(s): Hao Zhang, Fan Fan, Yuanqiang Yu, Zeyu Wang, Fangkun Liu, Ziyu Dai, Jintao Zhang, Zhixiong Liu, Quan Cheng
Software Mentions: 2
Published: almost 4 years ago

10.1111/jcmm.15176

A comprehensive analysis of IDO1 expression with tumour‐infiltrating immune cells and mutation burden in gynaecologic and breast cancers
Cited by: 20
Author(s): Feng Xu, Ranran Tang, Runjie Zhang, Huan Wang, Zhaodong Ji, Yang Shao, Shuoer Wang, Tianying Zhong, Yun Gu, Jiao Meng
Software Mentions: 2
Published: about 4 years ago

10.1001/jamanetworkopen.2020.2149

Association of Long Noncoding RNA Biomarkers With Clinical Immune Subtype and Prediction of Immunotherapy Response in Patients With Cancer
Cited by: 64
Author(s): Yunfang Yu, Wenda Zhang, Anlin Li, Yongjian Chen, Qiyun Ou, Ziwen He, Yiwen Zhang, Ruixin Liu, Erwei Song
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.15408

Prognostic significance of immune landscape in tumour microenvironment of endometrial cancer
Cited by: 57
Author(s): Bilan Li, Xiaoping Wan
Software Mentions: 2
Published: about 4 years ago

10.1186/s41065-021-00203-y

Comprehensive characterization and clinical relevance of the SWI/SNF copy number aberrations across human cancers
Cited by: 1
Author(s): Zhichen Xing, Buhuan Ma, Wei-Ting Sun, Yimin Sun, Caixia Liu
Software Mentions: 2
Published: over 2 years ago

10.1186/s12859-020-3423-z

Comparison of pathway and gene-level models for cancer prognosis prediction
Cited by: 13
Author(s): Xingyu Zheng, Christopher I. Amos, H. Robert Frost
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2020.00423

Identification of Immune Cell Landscape and Construction of a Novel Diagnostic Nomogram for Crohn’s Disease
Cited by: 13
Author(s): Hong Chen, Chunqiu Chen, Xiaoqi Yuan, Weiwei Xu, Minwei Yang, Qiwei Li, Zhenyu Shen, Yin Li
Software Mentions: 2
Published: about 4 years ago

10.1136/gutjnl-2019-318483

Interleukin-22 orchestrates a pathological endoplasmic reticulum stress response transcriptional programme in colonic epithelial cells
Cited by: 72
Author(s): Nick Powell, Eirini Pantazi, Polychronis Pavlidis, Anastasia Tsakmaki, Katherine Li, Feifei Yang, Aimée Parker, Carmen Pin, Domenico Cozzetto, Danielle Minns, Émilie Stolarczyk, Svetlana Saveljeva, Mohamed Rosmawati, Paul Lavender, Behdad Afzali, Jonathan Digby-Bell, Tsui Tjir-Li, Arthur Kaser, Joshua R. Friedman, Thomas T. MacDonald, Gavin Bewick, Graham M. Lord
Software Mentions: 2
Published: over 4 years ago

10.1111/jcmm.15762

A lncRNA prognostic signature associated with immune infiltration and tumour mutation burden in breast cancer
Cited by: 58
Author(s): Zijian Liu, Mi Mi, Xiaoqian Li, Xin Zheng, Gang Wu, Liling Zhang
Software Mentions: 2
Published: over 3 years ago

10.3390/cells10020202

Beyond the Warburg Effect: Oxidative and Glycolytic Phenotypes Coexist within the Metabolic Heterogeneity of Glioblastoma
Cited by: 38
Author(s): Tomás Duraj, Noemí García-Romero, Josefa Carrión-Navarro, Rodrigo Madurga, Ana Ortiz de Méndivil, Ricardo Prat-Acín, Lina García-Cañamaque, Ángel Ayuso-Sacido
Software Mentions: 2
Published: over 3 years ago

10.1186/s13148-021-01016-6

Hypoxia promotes the metastasis of pancreatic cancer through regulating NOX4/KDM5A-mediated histone methylation modification changes in a HIF1A-independent manner
Cited by: 30
Author(s): Hongzhen Li, Chunyan Peng, Chenhui Zhu, Shuang Nie, Xuetian Qian, Shihua Zhao, Mengyue Shi, Liang Yan, Xiwei Ding, Shu Zhang, Bin Zhang, Xi-Han Li, Guifang Xu, Ying Lv, Lei Wang, Helmut Friess, Bo Kong, Xiaoping Zou, Shanshan Shen
Software Mentions: 2
Published: over 3 years ago

10.1186/s13073-020-00780-z

Small-molecule MMP2/MMP9 inhibitor SB-3CT modulates tumor immune surveillance by regulating PD-L1
Cited by: 65
Author(s): Youqiong Ye, Xinwei Kuang, Zuozhong Xie, Long Liang, Zhao Zhang, Yongchang Zhang, Fangyu Ma, Qian Gao, Ruimin Chang, Heng-Huan Lee, Shuang Zhao, Juan Su, Hui Li, Jing-Bo Peng, Huifang Chen, Minzhu Yin, Cong Peng, Nong Yang, Jing Wang, Jing Liu, Hong Liu, Leng Han, Xiang Chen
Software Mentions: 2
Published: over 3 years ago

10.1186/s12859-021-04021-x

CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets
Cited by: 8
Author(s): Matthew N. Bernstein, Zijian Ni, Michael T. Collins, Mark E. Burkard, Christina Kendziorski, Ron Stewart
Software Mentions: 2
Published: about 3 years ago

10.1186/s12885-018-5140-9

PGAM5 expression and macrophage signatures in non-small cell lung cancer associated with chronic obstructive pulmonary disease (COPD)
Cited by: 12
Author(s): Francois Ng Kee Kwong, Andrew G. Nicholson, Stelios Pavlidis, Ian M. Adcock, Kian Fan Chung
Software Mentions: 2
Published: over 5 years ago

10.3390/genes11111281

Revealing Prognosis-Related Pathways at the Individual Level by a Comprehensive Analysis of Different Cancer Transcription Data
Cited by: 5
Author(s): Jingya Fang, Cong Pian, Mei‐Ling Xu, Lingpeng Kong, Zutan Li, Jinwen Ji, Yuanyuan Chen, Liangyun Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12885-021-08788-3

MMP1 and MMP9 are potential prognostic biomarkers and targets for uveal melanoma
Cited by: 21
Author(s): Tian-Yu Wang, Yuanyuan Zhang, Jianhao Bai, Yawen Xue, Qicong Peng
Software Mentions: 2
Published: over 2 years ago

10.1371/journal.pone.0089782

Rab27a Was Identified as a Prognostic Biomaker by mRNA Profiling, Correlated with Malignant Progression and Subtype Preference in Gliomas
Cited by: 21
Author(s): Hongjun Wang, Yan Zhao, Chuanbao Zhang, Mingyang Li, Chuanlu Jiang, Yongli Li
Software Mentions: 2
Published: about 10 years ago

10.3389/fonc.2021.677826

RBM10 Deficiency Is Associated With Increased Immune Activity in Lung Adenocarcinoma
Cited by: 4
Author(s): Bing Liu, Yaqi Wang, Han Wang, Zhongwu Li, Lujing Yang, Yan Shi, Xin Yang, Yuanyuan Ma, Xuan Gao, Yanfang Guan, Xin Yi, Xuefeng Xia, Jingjing Li, Nan Wu
Software Mentions: 2
Published: almost 3 years ago

10.1002/ctm2.6

HK3 is correlated with immune infiltrates and predicts response to immunotherapy in non‐small cell lung cancer
Cited by: 23
Author(s): Zhan Tuo, Xin Zheng, Yan Zong, Jie Li, Chunyan Zou, Yi Lv, Jun Liu
Software Mentions: 2
Published: about 4 years ago

10.1002/advs.202002518

CD63 <sup>+</sup> Cancer‐Associated Fibroblasts Confer Tamoxifen Resistance to Breast Cancer Cells through Exosomal miR‐22
Cited by: 74
Author(s): Yuan Gao, Xiaoju Li, Cheng Zeng, Chenlin Liu, Qiang Hao, Weina Li, Kuo Zhang, Wangqian Zhang, Shuning Wang, Huadong Zhao, Daiming Fan, Meng Li, Yingqi Zhang, Wei Zhang, Cun Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12885-017-3821-4

A network-based predictive gene-expression signature for adjuvant chemotherapy benefit in stage II colorectal cancer
Cited by: 12
Author(s): Bangrong Cao, Liping Luo, Feng Li, Sai Ma, Tingqing Chen, Yuan Ren, Zhengguo Xiao, Shujun Cheng, Kaitai Zhang, Changmin Chen
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.597860

HILPDA Is a Prognostic Biomarker and Correlates With Macrophage Infiltration in Pan-Cancer
Cited by: 24
Author(s): Chengdong Liu, Xiaohan Zhou, Hanyi Zeng, De‐Hua Wu, Li Liu
Software Mentions: 2
Published: about 3 years ago

10.1186/s12885-021-08444-w

A stable gene set for prediction of prognosis and efficacy of chemotherapy in gastric cancer
Cited by: 1
Author(s): Rui Wu, Sixuan Guo, Shuhui Lai, Guixing Pan, Linyi Zhang, Huanbing Liu
Software Mentions: 2
Published: almost 3 years ago

10.3389/fonc.2020.01482

SYPL1 Inhibits Apoptosis in Pancreatic Ductal Adenocarcinoma via Suppression of ROS-Induced ERK Activation
Cited by: 15
Author(s): Yiling Song, Xia Sun, Fangting Duan, Chaobin He, Jiali Wu, Xin Huang, Kaili Xing, Shuxin Sun, Ruiqi Wang, Fengxiao Xie, Yijun Mao, Jun Wang, Shengping Li
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.00959

CircRNA circ_POLA2 Promotes Cervical Squamous Cell Carcinoma Progression via Regulating miR-326/GNB1
Cited by: 14
Author(s): Yuan Cao, Juan Li, Yongyi Jia, Ruitao Zhang, Huirong Shi
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.649347

Ferroptosis-Related Gene Signature Accurately Predicts Survival Outcomes in Patients With Clear-Cell Renal Cell Carcinoma
Cited by: 19
Author(s): Kai‐Kai Chang, Chong Yuan, Xueguang Liu
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2021.592761

Pan-Cancer Analysis of NOS3 Identifies Its Expression and Clinical Relevance in Gastric Cancer
Cited by: 17
Author(s): Dan Zou, Zhi Li, Fei Lv, Yi Yang, Chuankai Yang, Jing Song, Yang Chen, Jian Zi, Jinpeng Zhou, Yang Jiang, Yanju Ma, Yu Tang, Ye Zhang
Software Mentions: 2
Published: about 3 years ago

10.1186/s12877-021-02487-1

Elevated level of the soluble receptor for advanced glycation end-products involved in sarcopenia: an observational study
Cited by: 5
Author(s): Shou‐En Wu, Yi‐Lin Chiu, Tung‐Wei Kao, Wei‐Liang Chen
Software Mentions: 2
Published: over 2 years ago

10.1371/journal.ppat.1008885

CX3CL1 and IL-15 Promote CD8 T cell chemoattraction in HIV and in atherosclerosis
Cited by: 13
Author(s): Soumya Panigrahi, Bonnie Chen, Mike Fang, Daria Potashnikova, Alexey A. Komissarov, A. Lebedeva, Gillian M Michaelson, Jonathan M. Wyrick, Sherri J. Morris, Scott F. Sieg, Mirko Paiardini, François Villinger, Karem C. Harth, Vikram S. Kashyap, Mark J. Cameron, Cheryl M. Cameron, Elena Vasilieva, Leonid Margolis, Souheil-Antoine Younes, Nicholas Funderburg, David A. Zidar, Michael M. Lederman, Michael L. Freeman
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.603702

Bcl9 Depletion Modulates Endothelial Cell in Tumor Immune Microenvironment in Colorectal Cancer Tumor
Cited by: 3
Author(s): Wei Zhuang, Mei Feng, Zhongen Wu, Shuru Shen, Di Zhu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12916-021-02031-3

Identification of NOTCH4 mutation as a response biomarker for immune checkpoint inhibitor therapy
Cited by: 24
Author(s): Junyu Long, Dongxu Wang, Yang Xu, Anqiang Wang, Yu Lin, Mingjun Zheng, Haohai Zhang, Xinting Sang, Hanping Wang, Ke Hu, Haitao Zhao
Software Mentions: 2
Published: almost 3 years ago

10.1073/pnas.2018229118

Systems level profiling of chemotherapy-induced stress resolution in cancer cells reveals druggable trade-offs
Cited by: 16
Author(s): Paula Saavedra‐García, Mónica Román-Trufero, Hibah A Al-Sadah, Kevin Blighe, Elena López‐Jiménez, Marilena Christoforou, Lucy Penfold, Daria Capece, Xiaobei Xiong, Yirun Miao, Katarzyna Parzych, Valentina S Caputo, Alexandros P. Siskos, Vesela Encheva, Zijing Liu, Denise Thiel, Martin Kaiser, Paolo Piazza, Aristeidis Chaidos, Anastasios Karadimitris, Guido Franzoso, Ambrosius P. Snijders, Hector C. Keun, Diego A. Oyarzún, Mauricio Barahona, Holger W. Auner
Software Mentions: 2
Published: about 3 years ago

10.1111/acel.13023

A serum protein signature of <i>APOE</i> genotypes in centenarians
Cited by: 20
Author(s): Paola Sebastiani, Stefano Monti, Melody K. Morris, Anastasia Gurinovich, Toshiko Tanaka, Stacy L. Andersen, Benjamin Sweigart, Luigi Ferrucci, Lori L. Jennings, David J. Glass, Thomas T. Perls
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12931-018-0968-8

Modulation of blood inflammatory markers by benralizumab in patients with eosinophilic airway diseases
Cited by: 49
Author(s): Srinivas Sridhar, Hao Líu, Tuyet‐Hang Pham, Gautam Damera, Paul Newbold
Software Mentions: 2
Published: over 5 years ago

10.1186/s12931-020-01605-8

Sputum ACE2, TMPRSS2 and FURIN gene expression in severe neutrophilic asthma
Cited by: 26
Author(s): Nazanin Zounemat Kermani, Woo-Jung Song, Yusef Badi, Ali Versi, Yike Guo, Kai Sun, PK Bhavsar, Peter Howarth, Sven‐Erik Dahlén, Peter J. Sterk, Ratko Djukanović, Ian M. Adcock, Kian Fan Chung
Software Mentions: 2
Published: over 3 years ago

10.1186/s12977-015-0226-9

Identification of novel HIV-1 dependency factors in primary CCR4+CCR6+Th17 cells via a genome-wide transcriptional approach
Cited by: 51
Author(s): Aurélie Cleret-Buhot, Yuwei Zhang, Delphine Planas, Jean-Philippe Goulet, Patricia Monteiro, Annie Gosselin, Vanessa Sue Wacleche, Cécile Tremblay, Mohammad Ali Jenabian, Jean Pierre Routy, Mohamed El-Far, Nicolas Chomont, Elias K. Haddad, Rafick Pierre Sékaly, Petronela Ancuța
Software Mentions: 2
Published: over 8 years ago

10.1186/s12977-016-0293-6

New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy
Cited by: 82
Author(s): Vanessa Sue Wacleche, Jean-Philippe Goulet, Annie Gosselin, Patricia Monteiro, Hugo Soudeyns, Rémi Fromentin, Mohammad‐Ali Jenabian, Shant M. Vartanian, Steven G. Deeks, Nicolas Chomont, Jean‐Pierre Routy, Petronela Ancuța
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.1006951

I_MDS: an inflammatory bowel disease molecular activity score to classify patients with differing disease-driving pathways and therapeutic response to anti-TNF treatment
Cited by: 17
Author(s): Stelios Pavlidis, Calixte S. Monast, Matthew J. Loza, Patrick Branigan, Kiang F. Chung, Ian M. Adcock, Yike Guo, Anthony Rowe, Frédéric Baribaud
Software Mentions: 2
Published: about 5 years ago

10.18632/aging.102669

Prediction of hepatocellular carcinoma prognosis based on expression of an immune-related gene set
Cited by: 30
Author(s): Yuting He, Qin Dang, Jie Li, Qiyao Zhang, Xiao Yu, Miaomiao Xue, Wenzhi Guo
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2021.736725

An Integrated Analysis of C5AR2 Related to Malignant Properties and Immune Infiltration of Breast Cancer
Cited by: 5
Author(s): Yumeng Zhu, Xiaochao Wang, Yanqing Xu, Lu Chen, Peipei Ding, Jianfeng Chen, Weiguo Hu
Software Mentions: 2
Published: over 2 years ago

10.1038/srep13072

Upregulation of miR-181s reverses mesenchymal transition by targeting KPNA4 in glioblastoma
Cited by: 60
Author(s): Hongjun Wang, Tao Tao, Wei Yan, Feng Yan, Yongzhi Wang, Jinquan Cai, Yongping You, Tao Jiang
Software Mentions: 2
Published: almost 9 years ago

10.3389/fonc.2021.618976

Construction and Validation of a Reliable Six-Gene Prognostic Signature Based on the TP53 Alteration for Hepatocellular Carcinoma
Cited by: 9
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 2
Published: almost 3 years ago

10.1038/s41598-017-02178-1

Genetic load makes cancer cells more sensitive to common drugs: evidence from Cancer Cell Line Encyclopedia
Cited by: 7
Author(s): Ana B. Pavel, Kirill S. Korolev
Software Mentions: 2
Published: about 7 years ago

10.1038/s41419-020-03039-y

SPATS2, negatively regulated by miR-145-5p, promotes hepatocellular carcinoma progression through regulating cell cycle
Cited by: 22
Author(s): Gang Dong, Shanshan Zhang, Shen Shen, Lulu Sun, Xuemei Wang, Ang Li, Jie Wu, Tingting Liu, Chaoyan Wang, Huanbin Wang, Tianlan Lu, Benchen Rao, Zhigang Ren
Software Mentions: 2
Published: over 3 years ago

10.1002/path.5434

Dissecting expression profiles of gastric precancerous lesions and early gastric cancer to explore crucial molecules in intestinal‐type gastric cancer tumorigenesis
Cited by: 27
Author(s): Yajing Zhang, Xi Wu, Chengli Zhang, Jiaqi Wang, Guijun Fei, Di Xia, Xinghua Lu, Feng Li, Shujun Cheng, Aiming Yang
Software Mentions: 2
Published: almost 4 years ago

Projects: bioconductor: GSVA

Papers Mentioning GSVA 893