10.1186/s12872-021-02166-4

Identification of biomarkers associated with metabolic cardiovascular disease using mRNA-SNP-miRNA regulatory network analysis
Cited by: 4
Author(s): Zhiyuan Fan, Wei Peng, Zhiwen Wang, Ling Zhang, Kuo Li
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-75974-x

Key factors explaining critical swimming speed in freshwater fish: a review and statistical analysis for Iberian species
Cited by: 30
Author(s): Carlos Cano‐Barbacil, Johannes Radinger, María Argudo, Francesc Rubio‐Gracia, Anna Vila‐Gispert, Emili García‐Berthou
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.00745

Bacterial Community Succession, Transmigration, and Differential Gene Transcription in a Controlled Vertebrate Decomposition Model
Cited by: 22
Author(s): Zachary M. Burcham, Jennifer L. Pechal, Carl J. Schmidt, Jeffrey L. Bose, Jason W. Rosch, M. Eric Benbow, Heather R. Jordan
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0096376

Large Sex Differences in Chicken Behavior and Brain Gene Expression Coincide with Few Differences in Promoter DNA-Methylation
Cited by: 38
Author(s): Daniel Nätt, Beatrix Agnvall, Per Jensen
Software Mentions: 6
Published: about 12 years ago

10.3390/metabo11050269

Influence of Extraction Solvent on Nontargeted Metabolomics Analysis of Enrichment Reactor Cultures Performing Enhanced Biological Phosphorus Removal (EBPR)
Cited by: 4
Author(s): Nay Min Min Thaw Saw, Pipob Suwanchaikasem, Rogelio Zuniga-Montanez, Guanglei Qiu, Ezequiel M. Marzinelli, Stefan Wuertz, Rohan B.H. Williams
Software Mentions: 6
Published: about 5 years ago

10.1186/s13073-021-00861-7

Development of double-positive thymocytes at single-cell resolution
Cited by: 15
Author(s): Young Li, Kun Li, Lianbang Zhu, Bin Li, Dandan Zong, Pengfei Cai, Chen Jiang, Pengcheng Du, Jun Lin, Kun Qu
Software Mentions: 6
Published: over 5 years ago

10.3390/s20226486

A Benchmark of Data Stream Classification for Human Activity Recognition on Connected Objects
Cited by: 9
Author(s): Martin Khannouz, Tristan Glatard
Software Mentions: 6
Published: over 5 years ago

10.1098/rsbl.2016.0407

Strong phylogenetic inertia on genome size and transposable element content among 26 species of flies
Cited by: 64
Author(s): Camille Sessegolo, Nelly Burlet, Annabelle Haudry
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pone.0144590

The Potential Influence of Bumble Bee Visitation on Foraging Behaviors and Assemblages of Honey Bees on Squash Flowers in Highland Agricultural Ecosystems
Cited by: 5
Author(s): Zhenghua Xie, Dongdong Pan, Jonathan Teichroew, Jiandong An
Software Mentions: 6
Published: over 10 years ago

10.1186/1471-2156-13-27

EggLib: processing, analysis and simulation tools for population genetics and genomics
Cited by: 139
Author(s): Stéphane De Mita, Mathieu Siol
Software Mentions: 6
Published: over 14 years ago

10.3389/fonc.2020.01496

Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Shengxiang Ren, Wei Wang, Hanyu Shen, Chenlin Zhang, Haiyan Hao, Mengjing Sun, Yingjing Wang, Xiaojing Zhang, Bing Lu, Chen Chen, Ziheng Wang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fnins.2021.700253

Machine Learning in Modeling of Mouse Behavior
Cited by: 4
Author(s): Marjan Gharagozloo, Abdelaziz Amrani, Kevin Wittingstall, Andrew Hamilton-Wright, Denis Gris
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2019.00209

Identifying Hub Genes for Heat Tolerance in Water Buffalo (Bubalus bubalis) Using Transcriptome Data
Cited by: 23
Author(s): Shenhe Liu, Tingzhu Ye, Zipeng Li, Jun Li, Muhammad Jamil Ahmad, Yang Zhou, Guohua Hua, Aixin Liang, Tingxian Deng, Liguo Yang
Software Mentions: 6
Published: over 7 years ago

10.1128/mBio.02495-18

The Transcriptional Cycle Is Suited to Daytime N ₂ Fixation in the Unicellular Cyanobacterium “ <i>Candidatus</i> Atelocyanobacterium thalassa” (UCYN-A)
Cited by: 28
Author(s): María del Carmen Muñoz-Marín, Irina N. Shilova, Tianshu Shi, Hanna Farnelid, Ana María Cabello, Jonathan P. Zehr
Software Mentions: 6
Published: over 7 years ago

10.15252/msb.20198871

Paralog dependency indirectly affects the robustness of human cells
Cited by: 40
Author(s): Rohan Dandage, Christian R. Landry
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-015-0107-4

Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
Cited by: 109
Author(s): Pål Trosvik, Eric J. de Muinck
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pcbi.1009071

CytoPy: An autonomous cytometry analysis framework
Cited by: 8
Author(s): Ross J. Burton, Raya Ahmed, Simone Cuff, Sarah Baker, Andreas Artemiou, Matthias Eberl
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-89783-3

Oil palm cultivation critically affects sociality in a threatened Malaysian primate
Cited by: 8
Author(s): Anna Holzner, Krishna N. Balasubramaniam, B. Weiß, Nadine Ruppert, Anja Widdig
Software Mentions: 6
Published: about 5 years ago

10.1186/s12866-020-01913-5

Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau
Cited by: 11
Author(s): Mengjun Zhang, Liwei Chai, Muke Huang, Weiqian Jia, Jiabao Guo, Yi Huang
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12862-019-1548-3

Phylogenetic signals in pest abundance and distribution range of spider mites
Cited by: 1
Author(s): Peng‐Yu Jin, Jing‐Tao Sun, Ary A. Hoffmann, Yanfei Guo, Jin‐Cheng Zhou, Yu‐Xi Zhu, Lei Chen, Xiao‐Yue Hong
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-019-5914-8

DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products
Cited by: 36
Author(s): Marco Meola, Étienne Rifa, Noam Shani, Céline Delbès, Hélène Berthoud, Christophe Chassard
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12864-015-2324-4

Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout
Cited by: 10
Author(s): Henrique César Pereira Figueiredo, Siomar C. Soares, Felipe Luiz Pereira, Fernanda Alves Dorella, Alex F. Carvalho, Júnia Pacheco Teixeira, Vasco Azevedo, Carlos Augusto Gomes Leal
Software Mentions: 6
Published: over 10 years ago

10.1186/s13326-019-0212-6

Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes
Cited by: 6
Author(s): Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, M.J. Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, P. J. W. Noble, Phil Jones, Joanna Dukes‐McEwan, Alan Radford, John Keane, Goran Nenadić
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-021-04309-y

airpg: automatically accessing the inverted repeats of archived plastid genomes
Cited by: 2
Author(s): Tilman Mehl, Michael Gruenstaeudl
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-018-33498-5

Distinct co-expression networks using multi-omic data reveal novel interventional targets in HPV-positive and negative head-and-neck squamous cell cancer
Cited by: 28
Author(s): Raquel L. Costa, Mariana Boroni, Marcelo A. Soares
Software Mentions: 6
Published: over 7 years ago

10.3390/toxins11110624

Analysis of the Use of Cylindrospermopsin and/or Microcystin-Contaminated Water in the Growth, Mineral Content, and Contamination of Spinacia oleracea and Lactuca sativa
Cited by: 22
Author(s): María Llana-Ruiz-Cabello, Ángeles Jos, Ana M. Cameán, Flávio Luís de Oliveira, Aldo Barreiro Felpeto, J.A.T. Machado, Joana Azevedo, Edgar Pinto, Agostinho Almeida, Alexandre Campos, Vítor Vasconcelos, Marisa Freitas
Software Mentions: 6
Published: over 6 years ago

10.3389/fbioe.2018.00200

Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Cited by: 17
Author(s): Felix Bracharz, Daniel Helmdach, Isabel Aschenbrenner, Nils Funck, Daniel Wibberg, Anderson M. Winkler, Frank Bohnen, Jörn Kalinowski, Norbert Mehlmer, Thomas Brück
Software Mentions: 6
Published: over 7 years ago

10.3390/s21020488

CMOS Image Sensors in Surveillance System Applications
Cited by: 16
Author(s): Susrutha Babu Sukhavasi, Khaled Elleithy, Abdelshakour Abuzneid, Abdelrahman Elleithy
Software Mentions: 6
Published: over 5 years ago

10.12688/f1000research.24868.3

Stage 1 Registered Report: Anomalous perception in a Ganzfeld condition - A meta-analysis of more than 40 years investigation
Cited by: 5
Author(s): Patrizio Tressoldi, Lance Storm
Software Mentions: 6
Published: over 5 years ago

10.1186/s40462-020-00222-w

Tracking animal movements using biomarkers in tail hairs: a novel approach for animal geolocating from sulfur isoscapes
Cited by: 10
Author(s): Zabibu Kabalika, Thomas A. Morrison, Rona A. R. McGill, Linus K. Munishi, Divine Ekwem, Wilson L. Mahene, Alex Lobora, Jason Newton, Juan Manuel Morales, Daniel T. Haydon, Grant Hopcraft
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13072-018-0250-9

Chromatin changes in Anopheles gambiae induced by Plasmodium falciparum infection
Cited by: 29
Author(s): José Luis Ruiz, Rakiswendé Serge Yerbanga, Thierry Léfèvre, Jean-Bosco Ouédraogo, Victor G. Corcés, Elena Gómez-Díaz
Software Mentions: 6
Published: over 7 years ago

10.1186/s12967-021-03012-z

Cancer-associated fibroblast infiltration in gastric cancer: the discrepancy in subtypes pathways and immunosuppression
Cited by: 18
Author(s): Xu Liu, Li Yao, Jingkun Qu, Lin Liu, Ning Lü, Jiansheng Wang, Zhang Jia
Software Mentions: 6
Published: almost 5 years ago

10.1093/gigascience/giaa079

EHRtemporalVariability: delineating temporal data-set shifts in electronic health records
Cited by: 21
Author(s): Carlos Sáez, Alba Gutiérrez-Sacristán, Isaac S. Kohane, Juan Miguel García‐Gómez, Paul Avillach
Software Mentions: 6
Published: almost 6 years ago

10.3389/fninf.2018.00036

Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction
Cited by: 32
Author(s): Stephen R. Pfohl, Renaid B. Kim, Grant Coan, Cassie S. Mitchell
Software Mentions: 6
Published: about 8 years ago

10.1111/1462-2920.14516

Differential ratio amplicons (<i>R</i>_amp) for the evaluation of RNA integrity extracted from complex environmental samples
Cited by: 12
Author(s): Fabien Cholet, Umer Zeeshan Ijaz, Cindy J. Smith
Software Mentions: 6
Published: over 7 years ago

10.1186/s12967-020-02545-z

Development and validation of a robust immune-related prognostic signature in early-stage lung adenocarcinoma
Cited by: 13
Author(s): Pancheng Wu, Yi Zheng, Yanyu Wang, Yadong Wang, Ning Liang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0204511

Flexible foraging strategies in Pipistrellus pygmaeus in response to abundant but ephemeral prey
Cited by: 4
Author(s): Lucinda Kirkpatrick, Jennifer Graham, Sean McGregor, Lynn Munro, Matheus Maximilian Ratz Scoarize, Kirsty Park
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12966-015-0228-y

International study of perceived neighbourhood environmental attributes and Body Mass Index: IPEN Adult study in 12 countries
Cited by: 52
Author(s): Ilse De Bourdeaudhuij, Delfien Van Dyck, Deborah Salvo, Rachel Davey, Rodrigo Siqueira Reis, Grant Schofield, Olga L. Sarmiento, Josef Mitáš, Lars Breum Christiansen, Duncan J. Macfarlane, Takemi Sugiyama, Inés Aguinaga-Ontoso, Neville Owen, Terry L. Conway, James F. Sallis, Ester Cerin
Software Mentions: 6
Published: about 11 years ago

10.1002/ece3.6237

Contrasting altitudinal variation of alpine plant communities along the Swedish mountains
Cited by: 6
Author(s): Johannes Måsviken, Fredrik Dalerum, Sara A. O. Cousins
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-62911-1

Analyzing the impact of Mycobacterium tuberculosis infection on primary human macrophages by combined exploratory and targeted metabolomics
Cited by: 25
Author(s): Frank Vrieling, Sarantos Kostidis, Herman P. Spaink, Mariëlle C. Haks, Oleg A. Mayboroda, Tom H. M. Ottenhoff, Simone A. Joosten
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0034846

Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics
Cited by: 152
Author(s): Lea A. I. Vaas, Johannes Sikorski, Victoria Michael, Markus Göker, Hans‐Peter Klenk
Software Mentions: 6
Published: about 14 years ago

10.1111/mpp.12964

A complex network of additive and epistatic quantitative trait loci underlies natural variation of <i>Arabidopsis thaliana</i> quantitative disease resistance to <i>Ralstonia solanacearum</i> under heat stress
Cited by: 22
Author(s): Nathalie Aoun, Henri Desaint, Léa Boyrie, Maxime Bonhomme, Laurent Deslandes, Richard Berthomé, Fabrice Roux
Software Mentions: 6
Published: almost 6 years ago

10.1093/jisesa/ieab062

Comparison of Yellow and Blue Sticky Cards for Detection and Monitoring Parasitoid Wasps of the Invasive <i>Halyomorpha halys</i> (Hemiptera: Pentatomidae)
Cited by: 4
Author(s): Mark Cody Holthouse, Lori R. Spears, Diane G. Alston
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13071-020-3924-7

Evidence for family-level variation of phenotypic traits in response to temperature of Brazilian Nyssorhynchus darlingi
Cited by: 2
Author(s): Virginia M. Chu, Maria Anice Mureb Sallum, Timothy E. Moore, Kevin J. Emerson, Carl D. Schlichting, Jan E. Conn
Software Mentions: 6
Published: over 6 years ago

10.1002/ece3.3597

Gut microbiota composition is associated with environmental landscape in honey bees
Cited by: 94
Author(s): Julia C. Jones, Carmelo Fruciano, Falk Hildebrand, Hasan Al Toufalilia, Nicholas J. Balfour, Peer Bork, Philipp Engel, Francis L. W. Ratnieks, William O. Hughes
Software Mentions: 6
Published: over 8 years ago

10.1038/srep33555

The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliates
Cited by: 65
Author(s): Anna Gimmler, Ralf Korn, Colomban de Vargas, Stéphane Audic, Thorsten Stoeck
Software Mentions: 6
Published: almost 10 years ago

10.1093/jme/tjaa151

A Low-Powered and Highly Selective Trap for Male Aedes (Diptera: Culicidae) Surveillance: The Male Aedes Sound Trap
Cited by: 9
Author(s): Kyran M. Staunton, Jacob E. Crawford, Jianyi Liu, Michael Townsend, Yu Han, Mark Desnoyer, Paul Howell, Xiang Wang, Thomas R. Burkot, Nigel Snoad, Scott A. Ritchie
Software Mentions: 6
Published: almost 6 years ago

10.7554/eLife.65369

Surprising phenotypic diversity of cancer-associated mutations of Gly 34 in the histone H3 tail
Cited by: 18
Author(s): Brandon R Lowe, Rajesh K Yadav, Ryan A. Henry, Patrick Schreiner, Atsushi Matsuda, Alfonso G. Fernandez, David Finkelstein, Margaret Campbell, Satish Kallappagoudar, Carolyn M Jablonowski, Andrew J. Andrews, Yasushi Hiraoka, Janet F. Partridge
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-020-03739-4

MEIRLOP: improving score-based motif enrichment by incorporating sequence bias covariates
Cited by: 5
Author(s): Nathaniel Delos Santos, Lorane Texari, Christopher Benner
Software Mentions: 6
Published: almost 6 years ago

10.3389/fncom.2014.00139

Diffusion approximation-based simulation of stochastic ion channels: which method to use?
Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pone.0246172

Blue-wavelength light therapy for post-traumatic brain injury sleepiness, sleep disturbance, depression, and fatigue: A systematic review and network meta-analysis
Cited by: 14
Author(s): Karan Srisurapanont, Yanisa Samakarn, Boonyasit Kamklong, Phichayakan Siratrairat, Arina Bumiputra, Montita Jaikwang, Manit Srisurapanont
Software Mentions: 6
Published: over 5 years ago

10.3389/fninf.2015.00009

Ontology-based approach for in vivo human connectomics: the medial Brodmann area 6 case study
Cited by: 3
Author(s): T. Moreau, Bernard Gibaud
Software Mentions: 6
Published: about 11 years ago

10.1186/s12859-016-1438-2

iGC—an integrated analysis package of gene expression and copy number alteration
Cited by: 13
Author(s): Yi-Pin Lai, Liang-Bo Wang, Weian Wang, Liang‐Chuan Lai, Mong‐Hsun Tsai, Tzu-Pin Lu, Eric Y. Chuang
Software Mentions: 6
Published: over 9 years ago

10.1534/g3.112.004283

Transcriptional Networks Controlling the Cell Cycle
Cited by: 24
Author(s): Martin Bonke, Mikko Turunen, Maria Sokolova, Anna Vähärautio, Teemu Kivioja, Minna Taipale, Mikael Björklund, Jussi Taipale
Software Mentions: 6
Published: over 13 years ago

10.1038/s42003-021-02044-x

Cooperative root graft networks benefit mangrove trees under stress
Cited by: 2
Author(s): Alejandra G. Vovides, Marie-Christin Wimmler, Flalk Schrewe, Thorsten Balke, Martin Zwanzig, Cyril Piou, Étienne Delay, Jorge López‐Portillo, Uta Berger
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2020.544610

Identification of Four Immune Subtypes in Bladder Cancer Based on Immune Gene Sets
Cited by: 25
Author(s): Chaozhi Tang, Jiakang Ma, Xiuli Liu, Zhengchun Liu
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13059-020-02147-4

CSS: cluster similarity spectrum integration of single-cell genomics data
Cited by: 29
Author(s): Zhisong He, Agnieska Brazovskaja, Sebastian Ebert, J. Gray Camp, Barbara Treutlein
Software Mentions: 6
Published: almost 6 years ago

10.1128/mSystems.01269-20

Structure of Chimpanzee Gut Microbiomes across Tropical Africa
Cited by: 7
Author(s): Clifton P. Bueno de Mesquita, Lauren M. Nichols, Matthew J. Gebert, Caihong Vanderburgh, Gaëlle Bocksberger, Jack D. Lester, Ammie K. Kalan, Paula Dieguez, Maureen S. McCarthy, Anthony Agbor, Paula Álvarez Varona, Ayuk Emmanuel Ayimisin, Mattia Bessone, Rebecca Chancellor, Heather Cohen, Charlotte Coupland, Tobias Deschner, Villard Ebot Egbe, Annemarie Goedmakers, Anne Céline Granjon, Cyril C. Grueter, Josephine Head, R. Adriana Hernández‐Aguilar, Kathryn J. Jeffery, Sorrel Jones, Parag Kadam, M. L. Kaiser, Juan Lapuente, Bradley Larson, Sergio Marrocoli, David Morgan, Badru Mugerwa, Felix Mulindahabi, Emily Neil, Protais Niyigaba, Liliana Pacheco, Alex K. Piel, Martha M. Robbins, Aaron Rundus, Crickette Sanz, Lilah Sciaky, Douglas Sheil, Volker Sommer, Fiona Stewart, Els Ton, Joost van Schijndel, Virginie Vergnes, Erin G. Wessling, Roman M. Wittig, Yisa Ginath Yuh, Kyle Yurkiw, Klaus Zuberbühler, Jan F. Gogarten, Anna Heintz‐Buschart, Alexandra N. Muellner‐Riehl, Christophe Boesch, Hjalmar S. Kühl, Noah Fierer, Mimi Arandjelovic, Robert R. Dunn
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-017-08235-z

Discrimination of plant root zone water status in greenhouse production based on phenotyping and machine learning techniques
Cited by: 21
Author(s): Doudou Guo, J.A. de Juan, Liu Chang, Zhang Jing-jin, Dan Huang
Software Mentions: 6
Published: almost 9 years ago

10.1016/j.redox.2020.101764

Prediction of survival odds in COVID-19 by zinc, age and selenoprotein P as composite biomarker
Cited by: 130
Author(s): Raban Arved Heller, Qian Sun, Julian Hackler, Julian Seelig, Linda Seibert, Asan Cherkezov, Waldemar B. Minich, Petra Seemann, Joachim Diegmann, Maximilian Pilz, Manuel Bachmann, Alireza Ranjbar, Arash Moghaddam, Lutz Schomburg
Software Mentions: 6
Published: over 5 years ago

10.1038/sdata.2018.227

Global distribution data for cattle, buffaloes, horses, sheep, goats, pigs, chickens and ducks in 2010
Cited by: 298
Author(s): Marius Gilbert, G. Nicolas, Giuseppina Cinardi, Thomas Van Boeckel, Sophie Vanwambeke, William Wint, Timothy P. Robinson
Software Mentions: 6
Published: over 7 years ago

10.3390/brainsci10120931

Efficacy of Low-Level Laser Therapy for Tinnitus: A Systematic Review with Meta-Analysis and Trial Sequential Analysis
Cited by: 3
Author(s): Chih‐Hao Chen, Chii-Yuan Huang, Chun-Yu Chang, Yen-Fu Cheng
Software Mentions: 6
Published: over 5 years ago

10.1093/icb/icaa138

Epigenetics of Animal Personality: DNA Methylation Cannot Explain the Heritability of Exploratory Behavior in a Songbird
Cited by: 11
Author(s): Kees van Oers, Bernice Sepers, William Sies, Fleur Gawehns, Koen Verhoeven, Veronika N. Laine
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.923

On the evolution of omnivory in a community context
Cited by: 24
Author(s): Alex M Chubaty, O. Brian, R. Will Stein, D. R. Gillespie, Lee M. Henry, Conan Phelan, Eiríkur Pálsson, Franz W. Simon, Bernard D. Roitberg
Software Mentions: 6
Published: over 12 years ago

10.1186/1471-2105-15-337

Bison: bisulfite alignment on nodes of a cluster
Cited by: 12
Author(s): Devon P. Ryan, Dan Ehninger
Software Mentions: 6
Published: over 11 years ago

10.1590/1678-4685-GMB-2017-0074

Skull shape and size variation within and between mendocinus and torquatus groups in the genus Ctenomys (Rodentia: Ctenomyidae) in chromosomal polymorphism context
Cited by: 11
Author(s): Rodrigo Fornel, Pedro Cordeiro‐Estrela, Thales Renato Ochotorena de Freitas
Software Mentions: 6
Published: over 8 years ago

10.1186/1471-2105-12-77

pROC: an open-source package for R and S+ to analyze and compare ROC curves
Cited by: 7,791
Author(s): Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller
Software Mentions: 6
Published: over 15 years ago

10.3389/fpls.2020.544435

Respiratory CO2 Combined With a Blend of Volatiles Emitted by Endophytic Serendipita Strains Strongly Stimulate Growth of Arabidopsis Implicating Auxin and Cytokinin Signaling
Cited by: 15
Author(s): Jolien Venneman, Lore Vandermeersch, Christophe Walgraeve, Kris Audenaert, Maarten Ameye, Jan Verwaeren, Kathy Steppe, Herman Van Langenhove, Geert Haesaert, Danny Vereecke
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13033-019-0329-0

An evaluation of the teen and Youth Mental Health First Aid training with a CALD focus: an uncontrolled pilot study with adolescents and adults in Australia
Cited by: 12
Author(s): Maria Gabriela Uribe Guajardo, Claire Kelly, Kathy S Bond, Russell Thomson, Shameran Slewa‐Younan
Software Mentions: 6
Published: over 6 years ago

10.3390/genes11040428

LSTrAP-Cloud: A User-Friendly Cloud Computing Pipeline to Infer Coexpression Networks
Cited by: 9
Author(s): Qiao Wen Tan, Wooi-Boon Goh, Marek Mutwil
Software Mentions: 6
Published: about 6 years ago

10.3389/fpls.2021.681113

Root Functional Trait and Soil Microbial Coordination: Implications for Soil Respiration in Riparian Agroecosystems
Cited by: 11
Author(s): Kira A. Borden, Tolulope Mafa-Attoye, Kari E. Dunfield, Naresh V. Thevathasan, Andrew Gordon, Marney E. Isaac
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.53618

Combined deletion of Glut1 and Glut3 impairs lung adenocarcinoma growth
Cited by: 15
Author(s): Caroline Contat, Pierre‐Benoit Ancey, Nadine Zangger, Silvia Sabatino, Justine Pascual, Stéphane Escrig, Linda Jensen, Christine Goepfert, Bernard Lanz, Mario Lepore, Rolf Gruetter, A. Rossier, Sabina Berezowska, Christina Neppl, Inti Zlobec, Stéphanie Clerc-Rosset, Graham Knott, Jeffrey C. Rathmell, E. Dale Abel, A. Meibom, Etienne Meylan
Software Mentions: 6
Published: about 6 years ago

10.3389/fimmu.2021.705646

On Deep Landscape Exploration of COVID-19 Patients Cells and Severity Markers
Cited by: 9
Author(s): Aarón Vázquez-Jiménez, Ugo Enrique Avila-Ponce De León, Meztli Matadamas-Guzmán, Erick Andrés Muciño-Olmos, Yoscelina Estrella Martínez-López, Thelma Escobedo-Tapia, Osbaldo Reséndis-Antonio
Software Mentions: 6
Published: almost 5 years ago

10.2196/21331

Detection of Bulbar Involvement in Patients With Amyotrophic Lateral Sclerosis by Machine Learning Voice Analysis: Diagnostic Decision Support Development Study
Cited by: 9
Author(s): Alberto Tena, Francesc Clarià, Francesc Solsona, Einar Meister, Mònica Povedano
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms21197271

LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion
Cited by: 9
Author(s): Shiyao Feng, Ying Li, Wei Du, Wei Lv, Ying Li
Software Mentions: 6
Published: almost 6 years ago

10.12688/f1000research.20887.3

RCy3: Network biology using Cytoscape from within R
Cited by: 72
Author(s): Julia Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Software Mentions: 6
Published: over 6 years ago

10.3389/fcell.2021.633747

Transcriptome Analysis Reveals Differentially Expressed Genes and Long Non-coding RNAs Associated With Fecundity in Sheep Hypothalamus With Different FecB Genotypes
Cited by: 10
Author(s): Si Chen, Xiaofei Guo, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Xiangyu Wang
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.65776

Developing a multivariate prediction model of antibody features associated with protection of malaria-infected pregnant women from placental malaria
Cited by: 18
Author(s): Elizabeth H. Aitken, Timon Damelang, Amaya Ortega-Pajares, Agersew Alemu, Wina Hasang, Saber Dini, Holger W. Unger, Maria Ome-Kaius, Morten A. Nielsen, Ali Salanti, Joe Smith, Stephen J. Kent, P Mark Hogarth, Bruce D. Wines, Julie A. Simpson, Amy W. Chung, Stephen J. Rogerson
Software Mentions: 6
Published: about 5 years ago

10.3389/fmolb.2016.00026

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data
Cited by: 46
Author(s): Philippe Rinaudo, Samia Boudah, Christophe Junot, Etienne Thévenot
Software Mentions: 6
Published: about 10 years ago

10.1186/s13012-021-01110-6

Proceedings from the 13th Annual Conference on the Science of Dissemination and Implementation
Cited by: 2
Author(s):
Software Mentions: 6
Published: about 5 years ago

10.1093/dnares/dsz015

Uncovering the mouse olfactory long non-coding transcriptome with a novel machine-learning model
Cited by: 8
Author(s): Antônio Pedro Camargo, Thiago S. Nakahara, Luiz E R Firmino, Paulo H.M. Netto, João Batista Plácido do Nascimento, Elisa Donnard, Pedro A. F. Galante, Marcelo Falsarella Carazzolle, Bettina Malnic, Fábio Papes
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-021-97805-3

Differences and similarities in the conceptualization of COVID-19 and other diseases in the first Italian lockdown
Cited by: 6
Author(s): Claudia María, Ilenia Falcinelli, Arthur-Henri Michalland, Luca Tummolini, Anna M. Borghi
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12859-014-0399-6

Integrating protein structural dynamics and evolutionary analysis with Bio3D
Cited by: 279
Author(s): Lars Skjærven, Xin‐Qiu Yao, Guido Scarabelli, Barry J. Grant
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pcbi.1009197

Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-017-15695-w

Objective quantification of nanoscale protein distributions
Cited by: 15
Author(s): Miklos Szoboszlay, Tekla Kirizs, Zoltán Nusser
Software Mentions: 6
Published: over 8 years ago

10.1128/mSystems.00269-18

Calour: an Interactive, Microbe-Centric Analysis Tool
Cited by: 24
Author(s): Zhenjiang Zech Xu, Amir Almasi‐Hashiani, Jon G. Sanders, Quanyin Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Software Mentions: 6
Published: over 7 years ago

10.2196/18741

Assessing the Contribution of Self-Monitoring Through a Commercial Weight Loss App: Mediation and Predictive Modeling Study
Cited by: 4
Author(s): Gregory Farage, Courtney Simmons, Mehmet Kocak, Robert C. Klesges, G. Wayne Talcott, Phyllis A. Richey, Marion E. Hare, Karen C. Johnson, Śaunak Sen, Rebecca A. Krukowski
Software Mentions: 6
Published: almost 5 years ago

10.1080/17453674.2020.1749810

Fate of patients with slipped capital femoral epiphysis (SCFE) in later life: risk of obesity, hypothyroidism, and death in 2,564 patients with SCFE compared with 25,638 controls
Cited by: 4
Author(s): Yasmin D. Hailer
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-70259-9

liputils: a Python module to manage individual fatty acid moieties from complex lipids
Cited by: 3
Author(s): Stefano Manzini, M. Busnelli, A Colombo, Mostafa Kiamehr, Giulia Chiesa
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12933-019-0879-0

Machine-learning to stratify diabetic patients using novel cardiac biomarkers and integrative genomics
Cited by: 45
Author(s): Quincy A. Hathaway, Skyler M. Roth, Mark V. Pinti, Daniel C. Sprando, Amina Kunovac, Andrya J. Durr, Chris C. Cook, Garrett K. Fink, Tristen B. Cheuvront, Jasmine H. Grossman, Ghadah A. Aljahli, Andrew Taylor, Andrew Giromini, Jessica L. Allen, John M. Hollander
Software Mentions: 6
Published: about 7 years ago

10.1016/j.csbj.2019.04.012

Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts
Cited by: 23
Author(s): Isaac A. Babarinde, Yuhao Li, Andrew P. Hutchins
Software Mentions: 6
Published: over 7 years ago

10.1038/s41597-019-0261-9

A 2D hyperspectral library of mineral reflectance, from 900 to 2500 nm
Cited by: 7
Author(s): Laurent Fasnacht, Marie-Louise Vogt, Philippe Renard, Philip Brunner
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-021-07819-4

Stage- and sex-specific transcriptome analyses reveal distinctive sensory gene expression patterns in a butterfly
Cited by: 7
Author(s): David A. Ernst, Erica L. Westerman
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-69330-2

A novel predictive model incorporating immune-related gene signatures for overall survival in melanoma patients
Cited by: 14
Author(s): Mengting Liao, Furong Zeng, Li Yao, Qian Gao, Mingzhu Yin, Guangtong Deng, Xiang Chen
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0071745

Impact of Library Preparation on Downstream Analysis and Interpretation of RNA-Seq Data: Comparison between Illumina PolyA and NuGEN Ovation Protocol
Cited by: 20
Author(s): Zhifu Sun, Yan W. Asmann, Asha Nair, Yuji Zhang, Liguo Wang, Krishna R. Kalari, Aditya Bhagwate, Tiffany R. Baker, Jennifer M. Carr, Jean Pierre A. Kocher, Edith A. Perez, E. Aubrey Thompson
Software Mentions: 6
Published: almost 13 years ago

10.3389/frobt.2018.00123

A Multimodal Analytics Platform for Journalists Analyzing Large-Scale, Heterogeneous Multilingual, and Multimedia Content
Cited by: 1
Author(s): Stefanos Vrochidis, Anastasia Moumtzidou, Ilias Gialampoukidis, Dimitris Liparas, Gerard Casamayor, Leo Wanner, Nicolaus Heise, Tilman Wagner, Andriy Bilous, Emmanuel Jamin, Boyan Simeonov, Vladimir Alexiev, Reinhard Busch, Ioannis Arapakis, Ioannis Kompatsiaris
Software Mentions: 6
Published: over 7 years ago

10.1523/ENEURO.0066-20.2020

Peripheral Nerve Single-Cell Analysis Identifies Mesenchymal Ligands that Promote Axonal Growth
Cited by: 33
Author(s): Jeremy S. Toma, Konstantina Karamboulas, Matthew Carr, Adelaida Kolaj, Scott A. Yuzwa, Neemat Mahmud, Mekayla Storer, David R. Kaplan, Freda D. Miller
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0239681

The Znt7-null mutation has sex dependent effects on the gut microbiota and goblet cell population in the mouse colon
Cited by: 3
Author(s): Mary E. Kable, Niknaz Riazati, Catherine P. Kirschke, Junli Zhao, Surapun Tepaamorndech, Liping Huang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmolb.2020.620765

Development and External Validation of a Novel Immune Checkpoint–Related Gene Signature for Prediction of Overall Survival in Hepatocellular Carcinoma
Cited by: 11
Author(s): Enfa Zhao, Shimin Chen, Yujie Dang
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-19354-6

Capturing expert uncertainty in spatial cumulative impact assessments
Cited by: 14
Author(s): Alice R. Jones, Zoë A. Doubleday, Thomas A. A. Prowse, Kathryn H. Wiltshire, Marty R. Deveney, Tim M. Ward, Sally L. Scrivens, Phillip Cassey, Laura G. O’Connell, Bronwyn M. Gillanders
Software Mentions: 6
Published: over 8 years ago