Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.13049.2

https://doi.org/10.12688/f1000research.13049.2

RSEQREP: RNA-Seq Reports, an open-source cloud-enabled framework for reproducible RNA-Seq data processing, analysis, and result reporting

Cited by: 6
Author(s): Travis L. Jensen, Michael Frasketi, Kevin P. Conway, Leigh Villarroel, Heather Hill, Konstantinos Krampis, Johannes Goll
Published: over 6 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207