Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/v11010053

https://doi.org/10.3390/v11010053

Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus

Cited by: 13
Author(s): Florian Pfaff, Sara Hägglund, Martina Zoli, Sandra Blaise‐Boisseau, Eve Laloy, Susanne Koethe, Daniela Zühlke, Katharina Riedel, Stéphan Zientara, Labib Bakkali‐Kassimi, J. F. Valarcher, Dirk W. Höper, Martin Beer, Michael Eschbaumer
Published: almost 6 years ago

Software Mentions 6

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)
Papers that mentioned: 4
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
pypi: Scaffold
Simple project scaffolding for Python
Papers that mentioned: 1,866