cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0151940

In-Hospital Disease Burden of Sarcoidosis in Switzerland from 2002 to 2012
Cited by: 30
Author(s): Susanne Pohle, Florent Baty, Martin Brutsche
Software Mentions: 8
Published: over 10 years ago

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji
Cited by: 11
Author(s): Laura K. Boelsen, Eileen M. Dunne, Moana Mika, Stefanie Eggers, Cattram Nguyen, Felisita Tupou Ratu, Fiona M. Russell, E. Kim Mulholland, Markus Hilty, Catherine Satzke
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0134502

Identifying Shifts in Leaf-Litter Ant Assemblages (Hymenoptera: Formicidae) across Ecosystem Boundaries Using Multiple Sampling Methods
Cited by: 15
Author(s): Michal Wiezik, Marek Svitok, Adela Wieziková, Martin Dovčiak
Software Mentions: 8
Published: about 11 years ago

10.3389/fmicb.2021.644828

The Cheese Production Facility Microbiome Exhibits Temporal and Spatial Variability
Cited by: 12
Author(s): Jared Johnson, Chris Curtin, Joy Waite‐Cusic
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2020.626713

Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor Range
Cited by: 6
Author(s): Janneke Schreuder, Francisca C. Velkers, Alex Bossers, Ruth Bouwstra, W.F. de Boer, Pim van Hooft, J.A. Stegeman, Stephanie D. Jurburg
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-019-0748-9

Microbial communities of the house fly Musca domestica vary with geographical location and habitat
Cited by: 58
Author(s): Rahel Park, Maria C. Dzialo, Stijn Spaepen, Donat Nsabimana, Kim Gielens, Herman Devriese, Sam Crauwels, Raúl Y. Tito, Jeroen Raes, Bart Lievens, Kevin J. Verstrepen
Software Mentions: 8
Published: almost 7 years ago

10.1093/molbev/msaa135

Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome
Cited by: 25
Author(s): Jaelle C. Brealey, Henrique G. Leitão, Tom van der Valk, Wenbo Xu, Katia Bougiouri, Love Dalén, Katerina Guschanski
Software Mentions: 8
Published: over 6 years ago

10.1038/s41396-020-0622-6

Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes
Cited by: 35
Author(s): Bettina Glasl, Steven J. Robbins, Pedro R. Frade, Emma Marangon, Patrick W. Laffy, David G. Bourne, Nicole S. Webster
Software Mentions: 8
Published: over 6 years ago

10.1038/s41396-019-0563-0

Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere
Cited by: 11
Author(s): Matti O. Ruuskanen, Stéphane Aris‐Brosou, Alexandre J. Poulain
Software Mentions: 8
Published: over 6 years ago

10.1038/s41396-018-0279-6

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
Cited by: 228
Author(s): Roland C. Wilhelm, Rahul Singh, Lindsay D. Eltis, William W. Mohn
Software Mentions: 8
Published: almost 8 years ago

10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: about 5 years ago

10.1038/s41396-021-00949-3

Social networks strongly predict the gut microbiota of wild mice
Cited by: 51
Author(s): Aura Raulo, Bryony Allen, Tanya Troitsky, Arild Husby, Josh A. Firth, Tim Coulson, Sarah C. L. Knowles
Software Mentions: 8
Published: over 5 years ago

10.1128/mSystems.01150-20

Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient
Cited by: 36
Author(s): Gui‐Feng Gao, Dan Peng, Binu M. Tripathi, Yihui Zhang, Haiyan Chu
Software Mentions: 8
Published: over 5 years ago

10.1128/mSystems.00852-20

Virulence of the Pathogen Porphyromonas gingivalis Is Controlled by the CRISPR-Cas Protein Cas3
Cited by: 16
Author(s): José O. Solbiati, Ana E. Duran-Pinedo, Fernanda Godoy Rocha, Frank C. Gibson, Jorge Frias-Lopez
Software Mentions: 8
Published: almost 6 years ago

10.1186/s40168-018-0434-3

Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing
Cited by: 20
Author(s): Ellen L. Young, Manus Carey, Andrew A. Meharg, Caroline Meharg
Software Mentions: 8
Published: over 8 years ago

10.1128/mSystems.01356-20

Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities
Cited by: 26
Author(s): Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan, Phillip G. Popovich
Software Mentions: 8
Published: about 5 years ago

10.3390/toxins13080583

Metaproteomics Reveals Alteration of the Gut Microbiome in Weaned Piglets Due to the Ingestion of the Mycotoxins Deoxynivalenol and Zearalenone
Cited by: 6
Author(s): Johan S. Sáenz, Alina Kurz, Ursula Ruczizka, Moritz Bünger, Maximiliane Dippel, Veronika Nagl, Bertrand Grenier, Andrea Ladinig, Jana Seifert, Evelyne Selberherr
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2020.00494

A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont
Cited by: 27
Author(s): Benoît Paix, Nathan Carriot, Raphaëlle Barry‐Martinet, Stéphane Greff, Benjamin Misson, Jean‐François Briand, Gérald Culioli
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-021-96160-7

Wolves, dogs and humans in regular contact can mutually impact each other’s skin microbiota
Cited by: 6
Author(s): Stefanie U. Wetzels, Cameron Strachan, Beate Conrady, Martin Wagner, Iwan Burgener, Zsófia Virányi, Evelyne Selberherr
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2018.02621

Elevated CO2 Has Little Influence on the Bacterial Communities Associated With the pH-Tolerant Coral, Massive Porites spp.
Cited by: 18
Author(s): Paul A. O’Brien, Hillary A. Smith, Stewart Fallon, Katharina Fabricius, Bette L. Willis, Kathleen M. Morrow, David G. Bourne
Software Mentions: 8
Published: almost 8 years ago

10.1038/s41598-021-89065-y

Exposure to airborne bacteria depends upon vertical stratification and vegetation complexity
Cited by: 24
Author(s): Jake M. Robinson, Christian Cando‐Dumancela, Rachael E. Antwis, Ross Cameron, Craig Liddicoat, Ravin Poudel, Philip Weinstein, Martin F. Breed
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-021-91118-1

The presence of Pseudogymnoascus destructans, a fungal pathogen of bats, correlates with changes in microbial metacommunity structure
Cited by: 3
Author(s): Matthew Grisnik, Joshua B. Grinath, Donald M. Walker
Software Mentions: 8
Published: over 5 years ago

10.1128/AEM.02601-17

Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada
Cited by: 23
Author(s): Wen Chen, Sarah Hambleton, Keith A. Seifert, Odile Carisse, Moussa S. Diarra, R. D. Peters, Christine Lowe, Julie T. Chapados, C. André Lévesque
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pone.0122070

Using Lidar Data to Analyse Sinkhole Characteristics Relevant for Understory Vegetation under Forest Cover—Case Study of a High Karst Area in the Dinaric Mountains
Cited by: 74
Author(s): Milan Kobal, Irena Bertoncelj, Jinhu Wang, Igor Dak̇skobler, Lado Kutnar
Software Mentions: 8
Published: over 11 years ago

10.1038/s41598-021-92658-2

Profiling temporal dynamics of acetogenic communities in anaerobic digesters using next-generation sequencing and T-RFLP
Cited by: 10
Author(s): Abhijeet Singh, Bettina Müller, Anna Schnürer
Software Mentions: 8
Published: about 5 years ago

10.1093/femsec/fiaa244

Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiome
Cited by: 0
Author(s): Lydia-Ann J. Ghuneim, Marco A. Distaso, Tatyana Chernikova, Rafael Bargiela, Evgenii A. Lunev, Aleksei A. Korzhenkov, Stepan V. Toshchakov, David Rojo, Coral Barbas, Manuel Ferrer, Olga V. Golyshina, Peter N. Golyshin, Davey L. Jones
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2020.579427

Environmental and Microbial Interactions Shape Methane-Oxidizing Bacterial Communities in a Stratified Lake
Cited by: 12
Author(s): Carole Guggenheim, Remo Freimann, Magdalena Mayr, Karin Beck, Bernhard Wehrli, Helmut Bürgmann
Software Mentions: 8
Published: almost 6 years ago

10.1111/eva.12932

Fine‐scale seascape genomics of an exploited marine species, the common cockle Cerastoderma edule, using a multimodelling approach
Cited by: 25
Author(s): Ilaria Coscia, Sophie B. Wilmes, Joseph E. Ironside, Alice Goward‐Brown, Enda O’Dea, Shelagh K. Malham, Allan D. McDevitt, Peter Robins
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.7579

Molecular diet analysis of neotropical bats based on fecal DNA metabarcoding
Cited by: 36
Author(s): Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kaiya L. Provost, Susan L. Perkins
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2021.728479

Cross-Sectional Study on the Gut Microbiome of Parkinson’s Disease Patients in Central China
Cited by: 11
Author(s): Liangwei Mao, Yu Zhang, Jing Tian, Ming Sang, Guimin Zhang, Yiming Zhou, Puqing Wang
Software Mentions: 8
Published: almost 5 years ago

10.1111/eva.12626

Capturing genetic variation in crop wild relatives: An evolutionary approach
Cited by: 20
Author(s): Paul A. Egan, Anne Muola, Johan A. Stenberg
Software Mentions: 8
Published: over 8 years ago

10.1038/s41598-020-59524-z

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cited by: 16
Author(s): Ruibo Cai, Ehsan Kayal, Catharina Alves‐de‐Souza, Estelle Bigeard, Erwan Corre, Christian Jeanthon, Dominique Marie, Betina M. Porcel, Raffaele Siano, Jeremy Szymczak, Matthias Wolf, Laure Guillou
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0250629

Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
Cited by: 3
Author(s): Andrea M. Burfeid-Castellanos, Rafael P. Martín–Martín, Michael Kloster, Carlos Angulo‐Preckler, Conxita Àvila, Bánk Beszteri
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-55706-6

Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Cited by: 26
Author(s): Ana Paula Chung, Carina Coimbra, Pedro Farias, Romeu Francisco, Rita Branco, Francisco Veiga Simão, Érico Rodrigues Gomes, Alcides Pereira, Maria Cristina Vila, António Fiúza, Martin Steen Mortensen, Søren J. Sørensen, Paula V. Morais
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-020-66865-2

Reproductive hormones mediate changes in the gut microbiome during pregnancy and lactation in Phayre’s leaf monkeys
Cited by: 37
Author(s): Elizabeth K. Mallott, Carola Borries, Andreas Koenig, Katherine R. Amato, Amy Lu
Software Mentions: 8
Published: about 6 years ago

10.1038/s41598-020-57612-8

Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats
Cited by: 26
Author(s): Yuxing Yang, Hsuen-Wen Chang, I-Hsuan Lin, Li‐Nien Chien, Min-Ju Wu, Yun‐Ru Liu, Peiguo Chu, Guoxiang Xie, Fangcong Dong, Jia Wang, Vincent H.S. Chang, Yun Yen
Software Mentions: 8
Published: over 6 years ago

10.1038/s41598-019-53342-8

Mixed-Cropping Between Field Pea Varieties Alters Root Bacterial and Fungal Communities
Cited by: 12
Author(s): Anthony A. Horner, Samuel S. Browett, Rachael E. Antwis
Software Mentions: 8
Published: almost 7 years ago

10.1186/s42523-021-00111-6

Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa)
Cited by: 2
Author(s): Bridget Chalifour, Jingchun Li
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-020-57622-6

Mainland and island populations of Mussaenda kwangtungensis differ in their phyllosphere fungal community composition and network structure
Cited by: 16
Author(s): Xin Qian, Shengchun Li, Bian Wu, Yong-Long Wang, Niu‐Niu Ji, Hui Yao, Hongyue Cai, Miaomiao Shi, Dianxiang Zhang
Software Mentions: 8
Published: over 6 years ago

10.1007/s10661-016-5710-8

Is the macrophyte diversification along the trophic gradient distinct enough for river monitoring?
Cited by: 14
Author(s): Krzysztof Szoszkiewicz, Anna Budka, Karol Pietruczuk, Dariusz Kayzer, Daniel Gebler
Software Mentions: 8
Published: almost 10 years ago

10.1186/s40168-016-0213-y

Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort
Cited by: 361
Author(s): Colin Hill, Denise B. Lynch, Kiera Murphy, Marynka Ulaszewska, Ian B. Jeffery, Carol Anne O’Shea, Claire Watkins, Eugene M. Dempsey, Fulvio Mattivi, Kieran Tuohy, R. Paul Ross, C. Anthony Ryan, Paul W. O’Toole, Catherine Stanton
Software Mentions: 8
Published: over 9 years ago

10.1002/ece3.2723

Different categories of biodiversity explain productivity variation after fertilization in a Tibetan alpine meadow community
Cited by: 19
Author(s): Xiaolong Zhou, Zhihao Guo, Pengfei Zhang, Honglin Li, Chengjin Chu, Xilai Li, Guozhen Du
Software Mentions: 8
Published: over 9 years ago

10.1038/s41598-019-47117-4

Using a trait-based approach to understand the efficiency of a selective device in a multispecific fishery
Cited by: 7
Author(s): Maud Mouchet, Manon Poirson, Fabien Morandeau, Camille Vogel, Sonia Méhault, Dorothée Kopp
Software Mentions: 8
Published: about 7 years ago

10.1038/s41598-020-69160-2

Individual-based population genomics reveal different drivers of adaptation in sympatric fish
Cited by: 10
Author(s): Héctor Torrado, Carlos Carreras, Núria Raventós, Enrique Macpherson, Marta Pascual
Software Mentions: 8
Published: about 6 years ago

10.1186/s12866-020-1716-z

Repeated inoculation with fresh rumen fluid before or during weaning modulates the microbiota composition and co-occurrence of the rumen and colon of lambs
Cited by: 31
Author(s): Shaobo Yu, Guangyu Zhang, Zhibo Liu, Peng Wu, Zhongtang Yu, Jiakun Wang
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.6913

Changes in beta diversity and species functional traits differ between saplings and mature trees in an old‐growth forest
Cited by: 1
Author(s): David Anthony Kirk, Marie‐Hélène Brice, Michael S. W. Bradstreet, Ken A. Elliott
Software Mentions: 8
Published: over 5 years ago

10.1002/ece3.5289

Disturbance history mediates climate change effects on subtropical forest biomass and dynamics
Cited by: 16
Author(s): Alexandre F. Souza, Solon Jonas Longhi
Software Mentions: 8
Published: over 7 years ago

10.1371/journal.pone.0015734

Cross-Scale Analysis of the Region Effect on Vascular Plant Species Diversity in Southern and Northern European Mountain Ranges
Cited by: 57
Author(s): Jonathan Lenoir, Jean‐Claude Gégout, Antoine Guisan, Pascal Vittoz, Thomas Wohlgemuth, Niklaus E. Zimmermann, Stefan Dullinger, Harald Pauli, Wolfgang Willner, John‐Arvid Grytnes, Risto Virtanen, Jens‐Christian Svenning
Software Mentions: 8
Published: over 15 years ago

10.1186/s40168-017-0371-6

Multi-level comparisons of cloacal, skin, feather and nest-associated microbiota suggest considerable influence of horizontal acquisition on the microbiota assembly of sympatric woodlarks and skylarks
Cited by: 55
Author(s): H. Pieter J. van Veelen, Joana Falcão Salles, B. Irene Tieleman
Software Mentions: 8
Published: almost 9 years ago

10.1186/s12864-020-06971-7

Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesis
Cited by: 44
Author(s): Asimenia Gavriilidou, Johanna Gutleben, Dennis Versluis, Francesca Forgiarini, Mark W. J. van Passel, Colin J. Ingham, Hauke Smidt, Detmer Sipkema
Software Mentions: 8
Published: about 6 years ago

10.1002/ece3.2641

Convergent evolution in social swallows (Aves: Hirundinidae)
Cited by: 12
Author(s): Allison E. Johnson, Jonathan S. Mitchell, Mary Bomberger Brown
Software Mentions: 8
Published: over 9 years ago

10.1111/mec.15484

Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone
Cited by: 43
Author(s): Olivier Laroche, Oliver Kersten, Craig R. Smith, Erica Goetze
Software Mentions: 8
Published: about 6 years ago

10.12688/f1000research.13541.1

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems
Cited by: 20
Author(s): Benjamin Delory, Li Mao, Christopher N. Topp, Guillaume Lobet
Software Mentions: 8
Published: over 8 years ago

10.1186/s12864-020-6703-0

Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction
Cited by: 26
Author(s): Xubo Qian, Yong‐Xin Liu, Xiaohong Ye, Wen Jie Zheng, Shaoxia Lv, Miaojun Mo, Jinjing Lin, Wen-Qin Wang, Weihan Wang, Xianning Zhang, Meiping Lu
Software Mentions: 8
Published: over 6 years ago

10.1002/ece3.6172

Habitat transitions alter the adaptive landscape and shape phenotypic evolution in needlefishes (Belonidae)
Cited by: 10
Author(s): Matthew A. Kolmann, Michael D. Burns, Justin Y. K. Ng, Nathan R. Lovejoy, Devin D. Bloom
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2020.01045

Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities
Cited by: 23
Author(s): Andrea Cavalieri, Friedhelm Bak, Adriana M. García-Lemos, Jacob Weiner, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 8
Published: over 6 years ago

10.1186/s40168-019-0630-9

Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems
Cited by: 103
Author(s): Shuo Jiao, Ye Xu, Jie Zhang, Yahai Lu
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-017-14785-z

Poly-β-hydroxybutyrate administration during early life: effects on performance, immunity and microbial community of European sea bass yolk-sac larvae
Cited by: 18
Author(s): Andrea Franke, Olivia Roth, Peter De Schryver, Till Bayer, Linsey Garcia‐Gonzalez, Sven Künzel, Peter Bossier, Joanna J. Miest, Catriona Clemmesen
Software Mentions: 8
Published: almost 9 years ago

10.1038/s41598-020-69374-4

Against all odds: a tale of marine range expansion with maintenance of extremely high genetic diversity
Cited by: 8
Author(s): Joana Isabel Robalo, Sara Martins Francisco, Catarina Vendrell, Cristina S. Lima, Ana Pereira, Benedikt Brunner, Mamadou Dia, Leonel Serrano Gordo, Rita Castilho
Software Mentions: 8
Published: about 6 years ago

10.1093/molbev/msab029

Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes
Cited by: 56
Author(s): Hanpeng Liao, Xi Li, Qiue Yang, Yudan Bai, Peng Cui, Chang Wen, Chen Liu, Zhi Chen, Jiahuan Tang, Jiangang Che, Zhen Yu, Stefan Geisen, Shungui Zhou, Ville‐Petri Friman, Yong‐Guan Zhu
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-47953-4

Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial
Cited by: 61
Author(s): Xuan He, Mariana Parenti, Tove Grip, Bo Lönnerdal, Niklas Timby, Magnus Domellöf, Olle Hernell, Carolyn M. Slupsky
Software Mentions: 8
Published: about 7 years ago

10.1038/s41598-021-99046-w

Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screening
Cited by: 7
Author(s): Kertu Liis Krigul, Oliver Aasmets, Kreete Lüll, Tõnis Org, Elin Org
Software Mentions: 8
Published: almost 5 years ago

10.1128/AEM.02755-17

Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities
Cited by: 45
Author(s): Prem K. Raghupathi, Jerneja Zupančič, Asker Brejnrod, Samuel Jacquiod, Kurt Houf, Mette Burmølle, Nina Gunde‐Cimerman, Søren J. Sørensen
Software Mentions: 8
Published: over 8 years ago

10.3390/microorganisms9061326

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Cited by: 5
Author(s): Thijs Van Gerrewey, Christophe El‐Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek‐Maarten Kerckhof, Nico Boon, Danny Geelen
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0191625

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
Cited by: 76
Author(s): Noelle Noyes, Kyu Chul Cho, Jacques Ravel, Larry J. Forney, Zaid Abdo
Software Mentions: 8
Published: over 8 years ago

10.1002/ece3.6305

Effects of diet, habitat, and phylogeny on the fecal microbiome of wild African savanna (Loxodonta africana) and forest elephants (L. cyclotis)
Cited by: 16
Author(s): Kris Budd, Joe C. Gunn, Tabitha Finch, Katy E. Klymus, Noah Sitati, Lori S. Eggert
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0209200

Effects of urbanization on the foraging ecology and microbiota of the generalist seabird Larus argentatus
Cited by: 61
Author(s): Matthew Fuirst, Richard R. Veit, Megan Hahn, Nolwenn M. Dheilly, Lesley H. Thorne
Software Mentions: 8
Published: over 7 years ago

10.1038/s42003-021-02509-z

Species diversity and food web structure jointly shape natural biological control in agricultural landscapes
Cited by: 10
Author(s): Fan Yang, Bing Liu, Zhao Yu, Kris A.G. Wyckhuys, Wopke Van der Werf, Yanhui Lu
Software Mentions: 8
Published: about 5 years ago

10.1093/aobpla/plab018

Alpine speciation and morphological innovations: revelations from a species-rich genus in the northern hemisphere
Cited by: 5
Author(s): Yazhou Zhang, Jianguo Chen, Hang Sun
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-018-0468-6

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
Cited by: 44
Author(s): Pål Trosvik, Eric J. de Muinck, Eli Knispel Rueness, Peter J. Fashing, Evan C. Beierschmitt, Kadie R. Callingham, Jacob B. Kraus, Thomas H. Trew, Amera Moges, Addisu Mekonnen, Vivek V. Venkataraman, Nga Nguyen
Software Mentions: 8
Published: over 8 years ago

10.1128/mSystems.00112-21

Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models
Cited by: 10
Author(s): Puzi Jiang, Sicheng Wu, Qibin Luo, Xing‐Ming Zhao, Weihua Chen
Software Mentions: 8
Published: about 5 years ago

10.3390/biology10010007

Effect of Weed Management on the Parasitoid Community in Mediterranean Vineyards
Cited by: 9
Author(s): Gabriella M Möller, Tamar Keasar, Idan Shapira, Daniella M Möller, Marco Ferrante, Michal Segoli
Software Mentions: 8
Published: over 5 years ago

10.1098/rspb.2018.0519

Intercontinental karyotype–environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly
Cited by: 33
Author(s): Claire Mérot, Emma L. Berdan, Charles Babin, Éric Normandeau, Maren Wellenreuther, Louis Bernatchez
Software Mentions: 8
Published: about 8 years ago

10.1007/s00300-021-02823-6

Seasonal dynamics of meroplankton in a sub-Antarctic fjord (Southern Patagonia, Chile)
Cited by: 1
Author(s): Santiago E A Pineda-Metz, Américo Montiel
Software Mentions: 8
Published: over 5 years ago

10.3390/microorganisms9020378

Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human Subjects
Cited by: 18
Author(s): Hend Altaib, Kohei Nakamura, Mayuko Abe, Yassien Badr, Emiko Yanase, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 8
Published: over 5 years ago

10.1002/ece3.6390

Can ancestry and morphology be used as surrogates for species niche relationships?
Cited by: 5
Author(s): Friedrich W. Keppeler, Kirk O. Winemiller
Software Mentions: 8
Published: over 6 years ago

10.1007/s11571-020-09645-y

Construction of embedded fMRI resting-state functional connectivity networks using manifold learning
Cited by: 12
Author(s): Ioannis Gallos, Evangelos Galaris, Constantinos Siettos
Software Mentions: 8
Published: almost 6 years ago

10.3390/biology10040314

Connectivity of Edaphic and Endolithic Microbial Niches in Cold Mountain Desert of Eastern Pamir (Tajikistan)
Cited by: 6
Author(s): Nataliia Khomutovska, Asunción de los Rı́os, Marcin Syczewski, Iwona Jasser
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2019.02761

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition
Cited by: 6
Author(s): Thomas Hartinger, Joan E. Edwards, Ruth Gómez Expósito, Hauke Smidt, Cajo J. F. ter Braak, N. Gresner, K. H. Südekum
Software Mentions: 8
Published: almost 7 years ago

10.3389/fpls.2018.00387

Functional and Taxonomic Differentiation of Macrophyte Assemblages Across the Yangtze River Floodplain Under Human Impacts
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Author(s): Min Zhang, Jorge García Molinos, Xiaolin Zhang, Jun Xu
Software Mentions: 8
Published: over 8 years ago

10.1371/journal.pone.0170176

Temporal and Spatial Scales Matter: Circannual Habitat Selection by Bird Communities in Vineyards
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Author(s): Claire Guyot, Raphaël Arlettaz, Pius Korner, Alain Jacot
Software Mentions: 8
Published: over 9 years ago

10.1186/s12866-021-02222-1

Patterns of yeast diversity distribution and its drivers in rhizosphere soil of Hami melon orchards in different regions of Xinjiang
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Author(s): Shanshan Zhu, Yonghui Lei, Chong Wang, Yu‐Mei Wei, Chuncheng Wang, Yanfei Sun
Software Mentions: 8
Published: over 5 years ago

10.3390/microorganisms9061153

Variation in Human Milk Composition Is Related to Differences in Milk and Infant Fecal Microbial Communities
Cited by: 30
Author(s): Ryan M. Pace, Janet E. Williams, Bianca Robertson, Kimberly A. Lackey, Courtney L. Meehan, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela G. Kita, Linda J. Kvist, Gloria E. Otoo, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Mark A. McGuire, Lars Bode, Michelle K. McGuire
Software Mentions: 8
Published: over 5 years ago

10.3389/fpls.2017.00930

The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.
Cited by: 44
Author(s): Jennifer Estendorfer, Barbara Stempfhuber, Paula Haury, Gisle Vestergaard, Matthias C. Rillig, Jasmin Joshi, Peter Schröder, Michael Schloter
Software Mentions: 8
Published: about 9 years ago

10.1128/Spectrum.00536-21

Mild and Severe SARS-CoV-2 Infection Induces Respiratory and Intestinal Microbiome Changes in the K18-hACE2 Transgenic Mouse Model
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Author(s): Brittany Seibert, C. Joaquín Cáceres, Stivalis Cárdenas-García, Silvia Carnaccini, Ginger Geiger, Daniela S. Rajão, Elizabeth A. Ottesen, Daniel R. Pérez
Software Mentions: 8
Published: about 5 years ago

10.3389/fmicb.2021.632935

Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events
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Author(s): Benjamin Zwirzitz, Stefanie U. Wetzels, Emmanuel D. Dixon, Svenja Fleischmann, Evelyne Selberherr, Sarah Thalguter, Narciso M. Quijada, Monika Dzieciol, Martin Wagner, Beatrix Stessl
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2019.01834

Captivity and Infection by the Fungal Pathogen Batrachochytrium salamandrivorans Perturb the Amphibian Skin Microbiome
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Author(s): Kieran A. Bates, Jennifer Shelton, Victoria L. Mercier, Kevin Hopkins, Xavier A. Harrison, Silviu O. Petrovan, Matthew C. Fisher
Software Mentions: 8
Published: about 7 years ago

10.3389/fmicb.2021.696398

The Microbiome of the Medicinal Plants Achillea millefolium L. and Hamamelis virginiana L.
Cited by: 10
Author(s): Simon Sauer, Leon Dlugosch, Dietmar R. Kammerer, Florian C. Stintzing, Meinhard Simon
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0251416

Compounds from plantar foot sweat, nesting material, and urine show strain patterns associated with agonistic and affiliative behaviors in group housed male mice, Mus musculus
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Author(s): Amanda J. Barabas, Helena A. Soini, Miloš V. Novotný, David R. Williams, Jacob A. Desmond, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 8
Published: over 5 years ago

10.1186/s42523-021-00096-2

Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
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Author(s): Davide Bozzi, Jacob Agerbo Rasmussen, Christian Carøe, Harald Sveier, Kristian Nordøy, M. Thomas P. Gilbert, Morten T. Limborg
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2021.676615

Attributes of Drying Define the Structure and Functioning of Microbial Communities in Temperate Riverbed Sediment
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Author(s): José Schreckinger, Michael Mutz, Clara Mendoza‐Lera, Aline Frossard
Software Mentions: 8
Published: about 5 years ago

10.7717/peerj.7038

Decoupled recovery of ecological communities after reclamation
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Author(s): Zachary A. Sylvain, David H. Branson, Tatyana A. Rand, Natalie M. West, Erin K. Espeland
Software Mentions: 7
Published: about 7 years ago

10.1186/s12870-021-03142-y

Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
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Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0229146

Vegetation changes in temperate ombrotrophic peatlands over a 35 year period
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Author(s): Nicolas Pinceloup, Monique Poulin, Marie‐Hélène Brice, Stéphanie Pellerin
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.6197

Carabid community structure in northern China grassland ecosystems: Effects of local habitat on species richness, species composition and functional diversity
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Author(s): Noëlline Tsafack, François Rebaudo, Hui Wang, D Nagy, Yi Xie, Xinpu Wang, Simone Fattorini
Software Mentions: 7
Published: over 7 years ago

10.3389/fmicb.2021.660719

Changes in the Community Structure of Under-Ice and Open-Water Microbiomes in Urban Lakes Exposed to Road Salts
Cited by: 14
Author(s): Isabelle B. Fournier, Connie Lovejoy, Warwick F. Vincent
Software Mentions: 7
Published: over 5 years ago

10.7717/peerj.8103

Acquisition of fungi from the environment modifies ambrosia beetle mycobiome during invasion
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Author(s): Davide Rassati, Lorenzo Marini, Antonino Malacrinò
Software Mentions: 7
Published: almost 7 years ago

10.3389/fmicb.2020.00789

Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing Approach
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Author(s): Nico Salmaso, Bruno Adriano, Massimo Pindo
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0242987

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more
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Author(s): Magdalena Skarżyńska, Pimlapas Leekitcharoenphon, René S. Hendriksen, Frank Møller Aarestrup, Dariusz Wasyl
Software Mentions: 7
Published: almost 6 years ago

10.7717/peerj.8289

Substrate rugosity and temperature matters: patterns of benthic diversity at tropical intertidal reefs in the SW Atlantic
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Author(s): Ana Carolina de Azevedo Mazzuco, Patricia Sarcinelli Stelzer, Ângelo F. Bernardino
Software Mentions: 7
Published: over 6 years ago

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