10.1186/s12864-020-6703-0

Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction
Cited by: 26
Author(s): Xubo Qian, Yong‐Xin Liu, Xiaohong Ye, Wen Jie Zheng, Shaoxia Lv, Miaojun Mo, Jinjing Lin, Wen-Qin Wang, Weihan Wang, Xianning Zhang, Meiping Lu
Software Mentions: 8
Published: over 6 years ago

10.7717/peerj.1356

Urban habitat complexity affects species richness but not environmental filtering of morphologically-diverse ants
Cited by: 22
Author(s): Alessandro Ossola, M. Nash, Fiona J. Christie, Amy K. Hahs, Stephen J. Livesley
Software Mentions: 8
Published: about 11 years ago

10.1371/journal.pone.0234498

Landscape composition and local floral resources influence foraging behavior but not the size of Bombus impatiens Cresson (Hymenoptera: Apidae) workers
Cited by: 9
Author(s): Amélie Gervais, Ève Courtois, Valérie Fournier, Marc Bélisle
Software Mentions: 8
Published: over 6 years ago

10.1098/rspb.2018.0519

Intercontinental karyotype–environment parallelism supports a role for a chromosomal inversion in local adaptation in a seaweed fly
Cited by: 33
Author(s): Claire Mérot, Emma L. Berdan, Charles Babin, Éric Normandeau, Maren Wellenreuther, Louis Bernatchez
Software Mentions: 8
Published: over 8 years ago

10.7717/peerj.6263

Variation in wild pea (<i>Pisum sativum</i>subsp.<i>elatius</i>) seed dormancy and its relationship to the environment and seed coat traits
Cited by: 32
Author(s): Iveta Hradilová, Martin Duchoslav, Jan Brus, Vilém Pechanec, Miroslav Hýbl, Pavel Kopecký, Lucie Smržová, Nikola Štefelová, Tadeáš Vaclávek, Michael Bariotakis, Jitka Machalová, Karel Hron, Stergios Pirintsos, Petr Smýkal
Software Mentions: 8
Published: almost 8 years ago

10.1002/ece3.6172

Habitat transitions alter the adaptive landscape and shape phenotypic evolution in needlefishes (Belonidae)
Cited by: 10
Author(s): Matthew A. Kolmann, Michael D. Burns, Justin Y. K. Ng, Nathan R. Lovejoy, Devin D. Bloom
Software Mentions: 8
Published: over 6 years ago

10.1186/s13104-016-2171-7

The effect of DNA extraction methodology on gut microbiota research applications
Cited by: 54
Author(s): Konstantinos Gerasimidis, Martin Bertz, Christopher Quince, K. T. Brunner, Alanna E. Bruce, Emilie Combet, Szymon T. Calus, Nicholas J. Loman, Umer Zeeshan Ijaz
Software Mentions: 8
Published: over 10 years ago

10.1186/s40168-019-0716-4

The association between pneumococcal vaccination, ethnicity, and the nasopharyngeal microbiota of children in Fiji
Cited by: 11
Author(s): Laura K. Boelsen, Eileen M. Dunne, Moana Mika, Stefanie Eggers, Cattram Nguyen, Felisita Tupou Ratu, Fiona M. Russell, E. Kim Mulholland, Markus Hilty, Catherine Satzke
Software Mentions: 8
Published: over 7 years ago

10.1371/journal.pone.0208370

Measuring popularity of ecological topics in a temporal dynamical knowledge network
Cited by: 3
Author(s): Tian-Yuan Huang, Bin Zhao
Software Mentions: 8
Published: over 7 years ago

10.1093/aobpla/plab018

Alpine speciation and morphological innovations: revelations from a species-rich genus in the northern hemisphere
Cited by: 5
Author(s): Yazhou Zhang, Jianguo Chen, Hang Sun
Software Mentions: 8
Published: over 5 years ago

10.1186/s40168-018-0468-6

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate
Cited by: 44
Author(s): Pål Trosvik, Eric J. de Muinck, Eli Knispel Rueness, Peter J. Fashing, Evan C. Beierschmitt, Kadie R. Callingham, Jacob B. Kraus, Thomas H. Trew, Amera Moges, Addisu Mekonnen, Vivek V. Venkataraman, Nga Nguyen
Software Mentions: 8
Published: over 8 years ago

10.1186/s40168-018-0593-2

Gut microbiome composition is associated with spatial structuring and social interactions in semi-feral Welsh Mountain ponies
Cited by: 61
Author(s): Rachael E. Antwis, Jessica M. D. Lea, Bryony Unwin, Susanne Shultz
Software Mentions: 8
Published: almost 8 years ago

10.3390/biology10010007

Effect of Weed Management on the Parasitoid Community in Mediterranean Vineyards
Cited by: 9
Author(s): Gabriella M Möller, Tamar Keasar, Idan Shapira, Daniella M Möller, Marco Ferrante, Michal Segoli
Software Mentions: 8
Published: almost 6 years ago

10.1002/ece3.2723

Different categories of biodiversity explain productivity variation after fertilization in a Tibetan alpine meadow community
Cited by: 19
Author(s): Xiaolong Zhou, Zhihao Guo, Pengfei Zhang, Honglin Li, Chengjin Chu, Xilai Li, Guozhen Du
Software Mentions: 8
Published: over 9 years ago

10.3389/fmicb.2021.627437

A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems
Cited by: 4
Author(s): Gilda Varliero, Alexandre M. Anesio, Gary Barker
Software Mentions: 8
Published: about 5 years ago

10.3390/biology10040314

Connectivity of Edaphic and Endolithic Microbial Niches in Cold Mountain Desert of Eastern Pamir (Tajikistan)
Cited by: 6
Author(s): Nataliia Khomutovska, Asunción de los Rı́os, Marcin Syczewski, Iwona Jasser
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0170176

Temporal and Spatial Scales Matter: Circannual Habitat Selection by Bird Communities in Vineyards
Cited by: 35
Author(s): Claire Guyot, Raphaël Arlettaz, Pius Korner, Alain Jacot
Software Mentions: 8
Published: over 9 years ago

10.3389/fimmu.2018.00462

Analyzing Immunoglobulin Repertoires
Cited by: 77
Author(s): Neha Chaudhary, Duane R. Wesemann
Software Mentions: 8
Published: over 8 years ago

10.3389/fmicb.2020.610269

Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon Sediments
Cited by: 15
Author(s): Ugo Marzocchi, Stefano Bonaglia, Anastasija Zaiko, Grazia Marina Quero, Irma Vybernaite‐Lubiene, Tobia Politi, Aurelija Samuilovienė, Mindaugas Žilius, Marco Bartoli, Ulisse Cardini
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41396-021-00949-3

Social networks strongly predict the gut microbiota of wild mice
Cited by: 51
Author(s): Aura Raulo, Bryony Allen, Tanya Troitsky, Arild Husby, Josh A. Firth, Tim Coulson, Sarah C. L. Knowles
Software Mentions: 8
Published: over 5 years ago

10.1038/s41396-018-0279-6

Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
Cited by: 228
Author(s): Roland C. Wilhelm, Rahul Singh, Lindsay D. Eltis, William W. Mohn
Software Mentions: 8
Published: about 8 years ago

10.1038/s41396-020-0622-6

Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes
Cited by: 35
Author(s): Bettina Glasl, Steven J. Robbins, Pedro R. Frade, Emma Marangon, Patrick W. Laffy, David G. Bourne, Nicole S. Webster
Software Mentions: 8
Published: over 6 years ago

10.1128/mSystems.01150-20

Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation Gradient
Cited by: 36
Author(s): Gui‐Feng Gao, Dan Peng, Binu M. Tripathi, Yihui Zhang, Haiyan Chu
Software Mentions: 8
Published: almost 6 years ago

10.3389/fgene.2021.683037

De novo Transcriptome Sequencing Coupled With Co-expression Analysis Reveal the Transcriptional Regulation of Key Genes Involved in the Formation of Active Ingredients in Peucedanum praeruptorum Dunn Under Bolting Period
Cited by: 7
Author(s): Cheng Song, Xiaoli Li, Bin Jia, Li Liu, Jinmei Ou, Bangxing Han
Software Mentions: 8
Published: over 5 years ago

10.3389/fgene.2019.01221

Increased Adaptive Variation Despite Reduced Overall Genetic Diversity in a Rapidly Adapting Invader
Cited by: 39
Author(s): D. Selechnik, Mark F. Richardson, Richard Shine, Jayna L. DeVore, Simon Ducatez, Lee A. Rollins
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41396-019-0563-0

Swift evolutionary response of microbes to a rise in anthropogenic mercury in the Northern Hemisphere
Cited by: 11
Author(s): Matti O. Ruuskanen, Stéphane Aris‐Brosou, Alexandre J. Poulain
Software Mentions: 8
Published: almost 7 years ago

10.1371/journal.pone.0191625

Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis
Cited by: 76
Author(s): Noelle Noyes, Kyu Chul Cho, Jacques Ravel, Larry J. Forney, Zaid Abdo
Software Mentions: 8
Published: almost 9 years ago

10.1371/journal.pone.0217804

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons
Cited by: 12
Author(s): Kirsten Grond, Julie Perreau, Wesley T. Loo, A. James Spring, Colleen M. Cavanaugh, Sarah M. Hird
Software Mentions: 8
Published: over 7 years ago

10.1002/ece3.6390

Can ancestry and morphology be used as surrogates for species niche relationships?
Cited by: 5
Author(s): Friedrich W. Keppeler, Kirk O. Winemiller
Software Mentions: 8
Published: over 6 years ago

10.1186/s42523-021-00096-2

Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals
Cited by: 65
Author(s): Davide Bozzi, Jacob Agerbo Rasmussen, Christian Carøe, Harald Sveier, Kristian Nordøy, M. Thomas P. Gilbert, Morten T. Limborg
Software Mentions: 8
Published: over 5 years ago

10.1128/mSystems.00152-21

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
Cited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0257471

Deciphering the low abundance microbiota of presumed aseptic hip and knee implants
Cited by: 2
Author(s): Charles Carr, Hannah Wilcox, Jeremy P. Burton, Sharanya Menon, Kait F. Al, David B. O’Gorman, Brent A. Lanting, Edward M. Vasarhelyi, Michael E. Neufeld, Matthew G. Teeter
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0220926

Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird
Cited by: 50
Author(s): Maureen H. Murray, Emily W. Lankau, Anjelika D. Kidd, Catharine N. Welch, Taylor Ellison, Henry Adams, Erin K. Lipp, Sonia M. Hernández
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2021.676615

Attributes of Drying Define the Structure and Functioning of Microbial Communities in Temperate Riverbed Sediment
Cited by: 7
Author(s): José Schreckinger, Michael Mutz, Clara Mendoza‐Lera, Aline Frossard
Software Mentions: 8
Published: over 5 years ago

10.1128/mBio.01018-16

Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome
Cited by: 396
Author(s): Marc A. Sze, Patrick D. Schloss
Software Mentions: 8
Published: about 10 years ago

10.1038/s41598-020-59524-z

Cryptic species in the parasitic Amoebophrya species complex revealed by a polyphasic approach
Cited by: 16
Author(s): Ruibo Cai, Ehsan Kayal, Catharina Alves‐de‐Souza, Estelle Bigeard, Erwan Corre, Christian Jeanthon, Dominique Marie, Betina M. Porcel, Raffaele Siano, Jeremy Szymczak, Matthias Wolf, Laure Guillou
Software Mentions: 8
Published: over 6 years ago

10.3390/microorganisms9061326

Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer
Cited by: 5
Author(s): Thijs Van Gerrewey, Christophe El‐Nakhel, Stefania De Pascale, Jolien De Paepe, Peter Clauwaert, Frederiek‐Maarten Kerckhof, Nico Boon, Danny Geelen
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0240996

Biological invasions alter environmental microbiomes: A meta-analysis
Cited by: 11
Author(s): Antonino Malacrinò, Victoria A Sadowski, Tvisha Martin, Nathalia Cavichiolli de Oliveira, Ian J. Brackett, James D. Feller, Kira Harris, ORLANDO COMBITA-HEREDIA, Rosa Vescio, Alison E. Bennett
Software Mentions: 8
Published: about 6 years ago

10.3390/biom10081179

Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs
Cited by: 2
Author(s): Narciso M. Quijada, Raúl Bodas, José M. Lorenzo, Stephan Schmitz‐Esser, David Rodrı́guez-Làzaro, Marta Hernández
Software Mentions: 8
Published: about 6 years ago

10.1007/s00248-019-01414-7

Tropical Rainforest Restoration Plantations Are Slow to Restore the Soil Biological and Organic Carbon Characteristics of Old Growth Rainforest
Cited by: 7
Author(s): Mark Bonner, Diane E. Allen, Richard Brackin, Timothy Smith, Tom Lewis, Luke P. Shoo, Susanne Schmidt
Software Mentions: 8
Published: about 7 years ago

10.1002/ece3.4387

Toward an ecoregion scale evaluation of <scp>eDNA</scp> metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray–Darling Basin (Australia)
Cited by: 69
Author(s): Jonas Bylemans, Dianne Gleeson, Christopher M. Hardy, Elise M. Furlan
Software Mentions: 8
Published: about 8 years ago

10.3390/plants10081512

Floral Scent Evolution in the Genus Jaborosa (Solanaceae): Influence of Ecological and Environmental Factors
Cited by: 6
Author(s): Marcela Moré, Florencia Soteras, Ana C. Ibañez, Stefan Dötterl, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-020-69160-2

Individual-based population genomics reveal different drivers of adaptation in sympatric fish
Cited by: 10
Author(s): Héctor Torrado, Carlos Carreras, Núria Raventós, Enrique Macpherson, Marta Pascual
Software Mentions: 8
Published: about 6 years ago

10.3389/fmicb.2021.728479

Cross-Sectional Study on the Gut Microbiome of Parkinson’s Disease Patients in Central China
Cited by: 11
Author(s): Liangwei Mao, Yu Zhang, Jing Tian, Ming Sang, Guimin Zhang, Yiming Zhou, Puqing Wang
Software Mentions: 8
Published: about 5 years ago

10.1128/mSphere.00176-18

High Rate of Infection by Only Oncogenic Human Papillomavirus in Amerindians
Cited by: 10
Author(s): Daniela Vargas-Robles, Magda Magris, Natalia Morales, Maurits N.C. de Koning, Iveth Rodríguez, Tahidid Nieves, Filipa Godoy-Vitorino, Gloria Inés Sánchez, Luis David Alcaraz, Larry J. Forney, María-Eglée Pérez, Luis García-Briceño, Leen–Jan van Doorn, Maria Gloria Domínguez-Bello
Software Mentions: 8
Published: over 8 years ago

10.3389/fmicb.2020.01045

Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial Communities
Cited by: 23
Author(s): Andrea Cavalieri, Friedhelm Bak, Adriana M. García-Lemos, Jacob Weiner, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2019.02761

Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition
Cited by: 6
Author(s): Thomas Hartinger, Joan E. Edwards, Ruth Gómez Expósito, Hauke Smidt, Cajo J. F. ter Braak, N. Gresner, K. H. Südekum
Software Mentions: 8
Published: almost 7 years ago

10.3390/microorganisms9020378

Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human Subjects
Cited by: 18
Author(s): Hend Altaib, Kohei Nakamura, Mayuko Abe, Yassien Badr, Emiko Yanase, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 8
Published: over 5 years ago

10.1080/19490976.2021.1966263

Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen <i>Citrobacter rodentium</i>
Cited by: 28
Author(s): Mareike Neumann, Alex Steimle, Erica T. Grant, Mathis Wolter, Amy Parrish, Stéphanie Willième, Dirk Brenner, Eric C. Martens, Mahesh S. Desai
Software Mentions: 8
Published: almost 6 years ago

10.3389/fmicb.2020.579427

Environmental and Microbial Interactions Shape Methane-Oxidizing Bacterial Communities in a Stratified Lake
Cited by: 12
Author(s): Carole Guggenheim, Remo Freimann, Magdalena Mayr, Karin Beck, Bernhard Wehrli, Helmut Bürgmann
Software Mentions: 8
Published: about 6 years ago

10.1038/s42003-021-01658-5

Colonization and genetic diversification processes of Leishmania infantum in the Americas
Cited by: 30
Author(s): Philipp Schwabl, Mariana Côrtes Boité, Giovanni Bussotti, Arne Jacobs, Björn Andersson, Otacílio C. Moreira, Anita Leocádio Freitas-Mesquita, José Roberto Meyer‐Fernandes, Erich Loza Telleria, Yara M. Traub-Csekö, Slavica Vaselek, Tereza Leštinová, Petr Volf, Fernanda Nazaré Morgado, Renato Porrozzi, Martin S. Llewellyn, Gérald F. Späth, Elisa Cupolillo
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-47117-4

Using a trait-based approach to understand the efficiency of a selective device in a multispecific fishery
Cited by: 7
Author(s): Maud Mouchet, Manon Poirson, Fabien Morandeau, Camille Vogel, Sonia Méhault, Dorothée Kopp
Software Mentions: 8
Published: about 7 years ago

10.1128/mBio.02293-19

Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria
Cited by: 43
Author(s): Grace Pold, Luiz A. Domeignoz‐Horta, Eric W. Morrison, Serita D. Frey, Seeta A. Sistla, Kristen M. DeAngelis
Software Mentions: 8
Published: over 6 years ago

10.1128/mSphere.00488-17

Novel ITS1 Fungal Primers for Characterization of the Mycobiome
Cited by: 68
Author(s): Mykhaylo Usyk, Christine P. Zolnik, Hitesh D. Patel, Michael H. Levi, Robert D. Burk
Software Mentions: 8
Published: almost 9 years ago

10.3389/fmicb.2018.02621

Elevated CO2 Has Little Influence on the Bacterial Communities Associated With the pH-Tolerant Coral, Massive Porites spp.
Cited by: 18
Author(s): Paul A. O’Brien, Hillary A. Smith, Stewart Fallon, Katharina Fabricius, Bette L. Willis, Kathleen M. Morrow, David G. Bourne
Software Mentions: 8
Published: almost 8 years ago

10.3390/nu13093295

Associations between Maternal Diet, Body Composition and Gut Microbial Ecology in Pregnancy
Cited by: 14
Author(s): Meghan L. Ruebel, Stephanie Gilley, Clark Sims, Ying Zhang, Donald Turner, Sree V. Chintapalli, Brian D. Piccolo, Aline Andres, Kartik Shankar
Software Mentions: 8
Published: about 5 years ago

10.1128/mSystems.00122-17

Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development
Cited by: 27
Author(s): Keaton Stagaman, Tara J Cepon-Robins, Melissa A. Liebert, Theresa E. Gildner, Samuel S. Urlacher, Felicia C. Madimenos, Karen Guillemin, J. Josh Snodgrass, Lawrence S. Sugiyama, Brendan J. M. Bohannan
Software Mentions: 8
Published: over 8 years ago

10.3390/microorganisms9061153

Variation in Human Milk Composition Is Related to Differences in Milk and Infant Fecal Microbial Communities
Cited by: 30
Author(s): Ryan M. Pace, Janet E. Williams, Bianca Robertson, Kimberly A. Lackey, Courtney L. Meehan, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela G. Kita, Linda J. Kvist, Gloria E. Otoo, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Mark A. McGuire, Lars Bode, Michelle K. McGuire
Software Mentions: 8
Published: over 5 years ago

10.1093/cz/zoab026

Hormonal modulation of reproduction and fertility signaling in polistine wasps
Cited by: 8
Author(s): Cíntia Akemi Oi, Rafael Carvalho da Silva, I. D. R. Stevens, Helena Mendes Ferreira, Fábio Santos do Nascimento, Tom Wenseleers
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2020.555347

Dysbiosis in the Dead: Human Postmortem Microbiome Beta-Dispersion as an Indicator of Manner and Cause of Death
Cited by: 22
Author(s): Sierra F. Kaszubinski, Jennifer L. Pechal, Katelyn Smiles, Carl J. Schmidt, Heather R. Jordan, Mariah H. Meek, M. Eric Benbow
Software Mentions: 8
Published: about 6 years ago

10.3389/fmicb.2020.00494

A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed Holobiont
Cited by: 27
Author(s): Benoît Paix, Nathan Carriot, Raphaëlle Barry‐Martinet, Stéphane Greff, Benjamin Misson, Jean‐François Briand, Gérald Culioli
Software Mentions: 8
Published: over 6 years ago

10.3390/biom11050695

Variations in Gut Microbiome are Associated with Prognosis of Hypertriglyceridemia-Associated Acute Pancreatitis
Cited by: 10
Author(s): Xiaomin Hu, Liang Gong, Ronggang Zhou, Ziying Han, Ji Li, Yan Zhang, Shuyang Zhang, Dong Wu
Software Mentions: 8
Published: over 5 years ago

10.1111/mec.15484

Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone
Cited by: 43
Author(s): Olivier Laroche, Oliver Kersten, Craig R. Smith, Erica Goetze
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2020.01780

Response of Soil Bacterial Community Diversity and Composition to Time, Fertilization, and Plant Species in a Sub-Boreal Climate
Cited by: 5
Author(s): Honghong Li, Petri Penttinen, Anu Mikkonen, Frederick L. Stoddard, Kristina Lindström
Software Mentions: 8
Published: about 6 years ago

10.1111/1365-2656.13065

Host genetics and geography influence microbiome composition in the sponge <i>Ircinia campana</i>
Cited by: 48
Author(s): Sarah M. Griffiths, Rachael E. Antwis, Luca Lenzi, Anita Lucaci, Donald C. Behringer, Mark J. Butler, Richard F. Preziosi
Software Mentions: 8
Published: about 7 years ago

10.1128/mBio.00637-18

How, When, and Where Relic DNA Affects Microbial Diversity
Cited by: 114
Author(s): Jay T. Lennon, Mario E. Muscarella, Sarah A. Placella, Brent K Lehmkuhl
Software Mentions: 8
Published: over 8 years ago

10.3389/fmicb.2019.02492

Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?
Cited by: 17
Author(s): Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy M. Vogel, Catherine Larose
Software Mentions: 8
Published: almost 7 years ago

10.1016/j.csbj.2021.05.024

Machine learning applied to serum and cerebrospinal fluid metabolomes revealed altered arginine metabolism in neonatal sepsis with meningoencephalitis
Cited by: 12
Author(s): Peng Zhang, Zhangxing Wang, Huixian Qiu, Wenhao Zhou, Mingbang Wang, Guoqiang Cheng
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-020-69374-4

Against all odds: a tale of marine range expansion with maintenance of extremely high genetic diversity
Cited by: 8
Author(s): Joana Isabel Robalo, Sara Martins Francisco, Catarina Vendrell, Cristina S. Lima, Ana Pereira, Benedikt Brunner, Mamadou Dia, Leonel Serrano Gordo, Rita Castilho
Software Mentions: 8
Published: about 6 years ago

10.1038/s41598-020-57612-8

Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats
Cited by: 26
Author(s): Yuxing Yang, Hsuen-Wen Chang, I-Hsuan Lin, Li‐Nien Chien, Min-Ju Wu, Yun‐Ru Liu, Peiguo Chu, Guoxiang Xie, Fangcong Dong, Jia Wang, Vincent H.S. Chang, Yun Yen
Software Mentions: 8
Published: almost 7 years ago

10.1093/molbev/msaa135

Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome
Cited by: 25
Author(s): Jaelle C. Brealey, Henrique G. Leitão, Tom van der Valk, Wenbo Xu, Katia Bougiouri, Love Dalén, Katerina Guschanski
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2021.632935

Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination Events
Cited by: 19
Author(s): Benjamin Zwirzitz, Stefanie U. Wetzels, Emmanuel D. Dixon, Svenja Fleischmann, Evelyne Selberherr, Sarah Thalguter, Narciso M. Quijada, Monika Dzieciol, Martin Wagner, Beatrix Stessl
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-53342-8

Mixed-Cropping Between Field Pea Varieties Alters Root Bacterial and Fungal Communities
Cited by: 12
Author(s): Anthony A. Horner, Samuel S. Browett, Rachael E. Antwis
Software Mentions: 8
Published: almost 7 years ago

10.1093/molbev/msab029

Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes
Cited by: 56
Author(s): Hanpeng Liao, Xi Li, Qiue Yang, Yudan Bai, Peng Cui, Chang Wen, Chen Liu, Zhi Chen, Jiahuan Tang, Jiangang Che, Zhen Yu, Stefan Geisen, Shungui Zhou, Ville‐Petri Friman, Yong‐Guan Zhu
Software Mentions: 8
Published: over 5 years ago

10.1002/ece3.5734

Predicting the success of an invader: Niche shift versus niche conservatism
Cited by: 21
Author(s): Stéphanie Sherpa, Maya Guéguen, Julien Renaud, Michaël G. B. Blum, Thierry Gaude, Frédéric Laporte, Mustafa Akiner, Bülent Alten, Carles Aranda, Hélène Barre‐Cardi, Romeo Bellini, Mikel Bengoa Paulis, Xiaoguang Chen, Roger Eritja, Eleonora Flacio, Cipriano Foxi, Intan H. Ishak, Katja Kalan, Shinji Kasai, Fabrizio Montarsi, I. Pajović, Dušan Petrić, Rosa Termine, Nataša Turić, Gonzalo M. Vazquez‐Prokopec, Enkelejda Velo, Goran Vignjević, Xiaohong Zhou, Laurence Després
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0122070

Using Lidar Data to Analyse Sinkhole Characteristics Relevant for Understory Vegetation under Forest Cover—Case Study of a High Karst Area in the Dinaric Mountains
Cited by: 74
Author(s): Milan Kobal, Irena Bertoncelj, Jinhu Wang, Igor Dak̇skobler, Lado Kutnar
Software Mentions: 8
Published: over 11 years ago

10.1007/s00125-019-4848-7

Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention study
Cited by: 117
Author(s): Thomas Bryrup, Cæcilie W. Thomsen, Timo Kern, Kristine H. Allin, Ivan Brandslund, Niklas Rye Jørgensen, Henrik Vestergaard, Torben Hansen, Oluf Pedersen, Trine Nielsen
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-020-66865-2

Reproductive hormones mediate changes in the gut microbiome during pregnancy and lactation in Phayre’s leaf monkeys
Cited by: 37
Author(s): Elizabeth K. Mallott, Carola Borries, Andreas Koenig, Katherine R. Amato, Amy Lu
Software Mentions: 8
Published: over 6 years ago

10.3389/fmicb.2019.01834

Captivity and Infection by the Fungal Pathogen Batrachochytrium salamandrivorans Perturb the Amphibian Skin Microbiome
Cited by: 35
Author(s): Kieran A. Bates, Jennifer Shelton, Victoria L. Mercier, Kevin Hopkins, Xavier A. Harrison, Silviu O. Petrovan, Matthew C. Fisher
Software Mentions: 8
Published: about 7 years ago

10.1002/ece3.971

Local adaptations to frost in marginal and central populations of the dominant forest tree<i><scp>F</scp>agus sylvatica</i><scp>L</scp>. as affected by temperature and extreme drought in common garden experiments
Cited by: 82
Author(s): Jüergen Kreyling, Constanze Buhk, Sabrina Backhaus, Martin Hallinger, Gerhard Huber, Lukas A. Huber, Anke Jentsch, Monika Konnert, Daniel Thiel, Martin Wilmking, Carl Beierkuhnlein
Software Mentions: 8
Published: over 12 years ago

10.3389/fmicb.2021.696398

The Microbiome of the Medicinal Plants Achillea millefolium L. and Hamamelis virginiana L.
Cited by: 10
Author(s): Simon Sauer, Leon Dlugosch, Dietmar R. Kammerer, Florian C. Stintzing, Meinhard Simon
Software Mentions: 8
Published: over 5 years ago

10.1038/s41598-019-47953-4

Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial
Cited by: 61
Author(s): Xuan He, Mariana Parenti, Tove Grip, Bo Lönnerdal, Niklas Timby, Magnus Domellöf, Olle Hernell, Carolyn M. Slupsky
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0106885

Quantifying Shark Distribution Patterns and Species-Habitat Associations: Implications of Marine Park Zoning
Cited by: 113
Author(s): Mario Espinoza, Michael Cappo, Michelle R. Heupel, Andrew J. Tobin, Colin A. Simpfendorfer
Software Mentions: 8
Published: about 12 years ago

10.1038/s41598-020-57622-6

Mainland and island populations of Mussaenda kwangtungensis differ in their phyllosphere fungal community composition and network structure
Cited by: 16
Author(s): Xin Qian, Shengchun Li, Bian Wu, Yong-Long Wang, Niu‐Niu Ji, Hui Yao, Hongyue Cai, Miaomiao Shi, Dianxiang Zhang
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41598-019-55706-6

Tailings microbial community profile and prediction of its functionality in basins of tungsten mine
Cited by: 26
Author(s): Ana Paula Chung, Carina Coimbra, Pedro Farias, Romeu Francisco, Rita Branco, Francisco Veiga Simão, Érico Rodrigues Gomes, Alcides Pereira, Maria Cristina Vila, António Fiúza, Martin Steen Mortensen, Søren J. Sørensen, Paula V. Morais
Software Mentions: 8
Published: almost 7 years ago

10.1128/mSphere.00916-19

Dual and Triple Epithelial Coculture Model Systems with Donor-Derived Microbiota and THP-1 Macrophages To Mimic Host-Microbe Interactions in the Human Sinonasal Cavities
Cited by: 15
Author(s): Charlotte De Rudder, Marta Calatayud, Sarah Lebeer, Tom Van de Wiele
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0187758

Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest
Cited by: 20
Author(s): Fatima Zahra Maghnia, Younes Abbas, Frédéric Mahe, Benaissa Kerdouh, Estelle Tournier, Mohamed Ouadji, Pierre Tisseyre, Yves Prin, Naïma El Ghachtouli, Salah Eddine Bakkali Yakhlef, Robin Duponnois, Hervé Sanguin
Software Mentions: 8
Published: almost 9 years ago

10.1371/journal.pone.0251416

Compounds from plantar foot sweat, nesting material, and urine show strain patterns associated with agonistic and affiliative behaviors in group housed male mice, Mus musculus
Cited by: 4
Author(s): Amanda J. Barabas, Helena A. Soini, Miloš V. Novotný, David R. Williams, Jacob A. Desmond, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pgen.1008658

Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish
Cited by: 63
Author(s): Arne Jacobs, Madeleine Carruthers, Andrey A. Yurchenko, Н. В. Гордеева, S. S. Alekseyev, Oliver E. Hooker, Jong S. Leong, David R. Minkley, Eric B. Rondeau, Ben F. Koop, Colin E. Adams, Kathryn R. Elmer
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0234537

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities
Cited by: 0
Author(s): Boahemaa Adu-Oppong, Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas
Software Mentions: 8
Published: over 6 years ago

10.1093/dnares/dsaa017

A specific combination of dual index adaptors decreases the sensitivity of amplicon sequencing with the Illumina platform
Cited by: 0
Author(s): Yuu Hirose, Takuhei Shiozaki, Itsuki Hamano, Shizue Yoshihara, Hayato Tokumoto, Toshihiko Eki, Naomi Harada
Software Mentions: 8
Published: about 6 years ago

10.1172/jci.insight.139930

Contribution of plasma cells and B cells to hidradenitis suppurativa pathogenesis
Cited by: 88
Author(s): Johann E. Gudjonsson, Lam C. Tsoi, Feiyang Ma, Allison C. Billi, Kelsey R. van Straalen, Allard R. J. V. Vossen, Hessel H. van der Zee, Paul W. Harms, Rachael Wasikowski, Christopher Yee, Syed Monem Rizvi, Xianying Xing, Enze Xing, Olesya Plazyo, Chang Zeng, Matthew Patrick, Margaret M. Lowe, Richard E. Burney, Jeffrey H. Kozlow, Jill R. Cherry-Bukowiec, Yanyun Jiang, Joseph Kirma, Stephan Weidinger, Kelly C. Cushing, Michael D. Rosenblum, Céline C. Berthier, Amanda S. MacLeod, John J. Voorhees, Fei Wen, J. Michelle Kahlenberg, Emanual Maverakis, Robert L. Modlin, Errol P. Prens
Software Mentions: 7
Published: about 6 years ago

10.1111/mec.15239

Host plant‐related genomic differentiation in the European cherry fruit fly, <i>Rhagoletis cerasi</i>
Cited by: 10
Author(s): Vid Baković, Hannes Schuler, Martin Schebeck, Jeffrey L. Feder, Christian Stauffer, Gregory J. Ragland
Software Mentions: 7
Published: about 7 years ago

10.1111/mec.14932

Flower‐visitor communities of an arcto‐alpine plant—Global patterns in species richness, phylogenetic diversity and ecological functioning
Cited by: 13
Author(s): Mikko Tiusanen, Tea Huotari, Paul D. N. Hebert, Tommi Andersson, Ashley L. Asmus, Joël Bêty, Emma Davis, Jennifer Gale, Bess Hardwick, David S. Hik, Christian Körner, Richard B. Lanctot, Maarten J. J. E. Loonen, Rauni Partanen, Karissa Reischke, Sarah T. Saalfeld, Fanny Senez‐Gagnon, Paul A. Smith, Ján Šulavík, Ilkka Syvänperä, Christine Urbanowicz, Siân Williams, Paul Woodard, Yulia Zaika, Tomas Roslin
Software Mentions: 7
Published: almost 8 years ago

10.1002/ece3.3906

Influence of northern limit range on genetic diversity and structure in a widespread North American tree, sugar maple (<i>Acer saccharum</i>Marshall)
Cited by: 11
Author(s): Noémie Graignic, Francine Tremblay, Yves Bergeron
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-019-52865-4

Niche partitioning of microbial communities in riverine floodplains
Cited by: 7
Author(s): Marc Peipoch, Scott R. Miller, Tiago Antão, H. Maurice Valett
Software Mentions: 7
Published: almost 7 years ago

10.1093/molbev/msab175

Geonomics: Forward-Time, Spatially Explicit, and Arbitrarily Complex Landscape Genomic Simulations
Cited by: 10
Author(s): Drew E Terasaki Hart, Anusha P Bishop, Ian Wang
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.7332

Bottom‐up effects of fungicides on tadpoles of the European common frog ( <i>Rana temporaria</i> )
Cited by: 1
Author(s): Mirco Bundschuh, Jochen P. Zubrod, Theo Wernicke, Marco Konschak, Leon Werner, Carsten A. Brühl, Patrick Baudy, Ralf Schulz
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.2851

Community assembly in <i>Nothobranchius</i> annual fishes: Nested patterns, environmental niche and biogeographic history
Cited by: 20
Author(s): Martin Reichard, Michal Janáč, Matěj Polačik, Radim Blažek, Milan Vrtílek
Software Mentions: 7
Published: over 9 years ago

10.3389/fmicb.2021.607289

The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia
Cited by: 5
Author(s): J. B. Kelly, David E. Carlson, Jun Siong Low, Tyler Rice, Robert Thacker
Software Mentions: 7
Published: over 5 years ago