cran: poppr | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-75345-6

High gene flow maintains genetic diversity following selection for high EPSPS copy number in the weed kochia (Amaranthaceae)
Cited by: 9
Author(s): Sara L. Martin, Leshawn Benedict, Wei Wei, Connie A. Sauder, Hugh J. Beckie, Linda M. Hall
Software Mentions: 17
Published: about 4 years ago

10.3389/fmicb.2021.709611

Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System
Cited by: 2
Author(s): Yousri Abdelhafiz, Jorge M. O. Fernandes, Simone Larger, Davide Albanese, Claudio Donati, Omid Jafari, Artem Nedoluzhko, Viswanath Kiron
Software Mentions: 14
Published: over 3 years ago

10.1371/journal.pone.0225615

An indigenous Saccharomyces uvarum population with high genetic diversity dominates uninoculated Chardonnay fermentations at a Canadian winery
Cited by: 9
Author(s): Garrett C. McCarthy, Sydney Morgan, Jonathan T. Martiniuk, Brianne L. Newman, Stephanie McCann, Vivien Measday, Daniel M. Durall
Software Mentions: 14
Published: almost 4 years ago

10.3390/microorganisms9050945

Diversity and Geographical Structure of Xanthomonas citri pv. citri on Citrus in the South West Indian Ocean Region
Cited by: 4
Author(s): Olivier Pruvost, Damien Richard, Karine Boyer, Stéphanie Javegny, Claudine Boyer, Frédéric Chiroleu, Pierre Grygiel, Evelyne Parvedy, Isabelle Robène, Véronique Maillot-Lebon, Abdou Azali Hamza, Kanta Kumar Lobin, Marc Naiken, Christian Vernière
Software Mentions: 13
Published: over 3 years ago

10.1111/eva.12965

Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster Crassostrea gigas throughout the Northern Hemisphere
Cited by: 11
Author(s): Ben J. G. Sutherland, Claire Rycroft, Anne‐Laure Ferchaud, Rob Saunders, Li Li, Sheng Liu, Amy M. Chan, Sarah P. Otto, Curtis A. Suttle, Kristina M. Miller
Software Mentions: 13
Published: over 4 years ago

10.1371/journal.pgen.1009291

Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci
Cited by: 30
Author(s): Marisa E. Miller, Eric S. Nazareno, Susan M. Rottschaefer, Jakob Riddle, Daniel A. Pereira, Feng Li, Hoa Nguyen-Phuc, Eva C Henningsen, Antoine Persoons, Diane G. O. Saunders, Eva H. Stukenbrock, Peter N. Dodds, Shahryar F. Kianian, Melania Figueroa
Software Mentions: 13
Published: almost 4 years ago

10.1371/journal.pone.0184652

The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems
Cited by: 48
Author(s): Ana Hranilović, Marina Bely, Isabelle Masneuf‐Pomarède, Vladimir Jiranek, Warren Albertin
Software Mentions: 12
Published: over 7 years ago

10.1002/ece3.7625

Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab Scylla olivacea (Herbst, 1796) in the Sulu Sea
Cited by: 4
Author(s): Michael John Mendiola, Rachel Ravago-Gotanco
Software Mentions: 12
Published: over 3 years ago

10.1128/mBio.02782-18

Fitness Cost of Aflatoxin Production in Aspergillus flavus When Competing with Soil Microbes Could Maintain Balancing Selection
Cited by: 21
Author(s): Milton T. Drott, Tracy Debenport, Steven A. Higgins, Daniel H. Buckley, Michael G. Milgroom
Software Mentions: 12
Published: almost 6 years ago

10.7717/peerj.11534

AlleleShift: an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Cited by: 5
Author(s): Roeland Kindt
Software Mentions: 12
Published: over 3 years ago

10.7717/peerj.4152

Population structure and phenotypic variation ofSclerotinia sclerotiorumfrom dry bean (Phaseolus vulgaris) in the United States
Cited by: 28
Author(s): Zhian N. Kamvar, Bimal S. Amaradasa, Rachana Jhala, Serena McCoy, James R. Steadman, Sydney E. Everhart
Software Mentions: 11
Published: about 7 years ago

10.1002/ece3.7515

Forest Saccharomyces paradoxus are robust to seasonal biotic and abiotic changes
Cited by: 4
Author(s): Primrose J. Boynton, Dominika Wloch‐Salamon, Doreen Landermann, Eva H. Stukenbrock
Software Mentions: 11
Published: over 3 years ago

10.1111/eva.13209

Mixed‐stock analysis using Rapture genotyping to evaluate stock‐specific exploitation of a walleye population despite weak genetic structure
Cited by: 17
Author(s): Peter T. Euclide, Tom MacDougall, Jason M. Robinson, Matthew D. Faust, Chris C. Wilson, Kuan‐Yu Chen, Elizabeth A. Marschall, Wesley A. Larson, Stuart A. Ludsin
Software Mentions: 10
Published: over 3 years ago

10.3389/fpls.2020.587426

Genome-Wide DArTSeq Genotyping and Phenotypic Based Assessment of Within and Among Accessions Diversity and Effective Sample Size in the Diverse Sorghum, Pearl Millet, and Pigeonpea Landraces
Cited by: 13
Author(s): Victor Allan, Mani Vetriventhan, R. Senthil, S. Geetha, Santosh Deshpande, Abhishek Rathore, Vinod Kumar, Prabhat Kumar Singh, Surender Reddymalla, V. C. R. Azevedo
Software Mentions: 10
Published: about 4 years ago

10.1002/ece3.7563

The interaction of resource use and gene flow on the phenotypic divergence of benthic and pelagic morphs of Icelandic Arctic charr (Salvelinus alpinus)
Cited by: 10
Author(s): Matthew K. Brachmann, Kevin J. Parsons, Skúli Skúlason, Moira M. Ferguson
Software Mentions: 10
Published: over 3 years ago

10.1186/s12915-021-01029-w

Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens
Cited by: 36
Author(s): Cengiz Kaya, Tomas N Generalovic, Gunilla Ståhls, Martin Hauser, Ana Clariza Samayoa, Carlos Gustavo Nunes-Silva, Heather Roxburgh, Jens Wohlfahrt, Ebenezer Ato Ewusie, Marc Kenis, Yupa Hanboonsong, Jesús Orozco, Nancy Carrejo, Satoshi Nakamura, Laura Gasco, Santos Rojo, Chrysantus M. Tanga, Rudolf Meier, Clint Rhode, Christine Picard, Chris D. Jiggins, Florian Leiber, Jeffery K. Tomberlin, Martin Hasselmann, Wolf U. Blanckenhorn, Martin Kapun, Christoph Sandrock
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0241025

Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species
Cited by: 13
Author(s): Brenda Gabriela Diaz, Maria Imaculada Zucchi, Alessandro Alves‐Pereira, Caléo Panhoca de Almeida, Aline Costa Lima Moraes, Suelen Alves Vianna, Joaquim Adelino de Azevedo-Filho, Carlos Augusto Colombo
Software Mentions: 9
Published: over 3 years ago

10.1002/ece3.5070

Next‐generation phylogeography of the cockleCerastoderma glaucum: Highly heterogeneous genetic differentiation in a lagoon species
Cited by: 10
Author(s): Ludmila Sromek, Didier Forcioli, Rafał Lasota, Paola Furla, Maciej Wołowicz
Software Mentions: 9
Published: over 5 years ago

10.3389/fpls.2018.01673

Genetic and Pathogenicity Diversity of Aphanomyces euteiches Populations From Pea-Growing Regions in France
Cited by: 19
Author(s): Anne Quillévéré‐Hamard, Gwenola Le Roy, Anne Moussart, Alain Baranger, Didier Andrivon, Marie‐Laure Pilet‐Nayel, Christophe Le May
Software Mentions: 9
Published: about 6 years ago

10.1371/journal.pone.0236084

Mating system is correlated with immunogenetic diversity in sympatric species of Peromyscine mice
Cited by: 0
Author(s): Jesyka Meléndez‐Rosa, Ke Bi, Eileen A. Lacey
Software Mentions: 9
Published: over 4 years ago

10.1038/s41437-021-00418-9

Population genomics and conservation management of a declining tropical rodent
Cited by: 9
Author(s): Brenton von Takach, Cara E. Penton, Brett P. Murphy, Ian J. Radford, Hugh F. Davies, Brydie M. Hill, Sam C. Banks
Software Mentions: 9
Published: almost 4 years ago

10.1111/mec.15120

Lineage specific histories of Mycobacterium tuberculosis dispersal in Africa and Eurasia
Cited by: 69
Author(s): Mary O’Neill, Abigail C. Shockey, Alex Zarley, William Aylward, Vegard Eldholm, Andrew Kitchen, Caitlin S. Pepperell
Software Mentions: 9
Published: over 5 years ago

10.1002/ece3.7428

An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat loss
Cited by: 15
Author(s): Ary A. Hoffmann, Vanessa L. White, Moshe Jasper, Hiromi Yagui, Steve Sinclair, Michael R. Kearney
Software Mentions: 8
Published: over 3 years ago

10.1038/s42003-020-01377-3

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm
Cited by: 71
Author(s): Stephen R. Doyle, Alan S. Tracey, Roz Laing, Nancy Holroyd, David J. Bartley, Wojtek Bazant, Helen Beasley, Robin N. Beech, Collette Britton, Karen Brooks, Umer Chaudhry, Kirsty Maitland, Axel Martinelli, Jennifer D. Noonan, Michael Paulini, Michael A. Quail, Elizabeth Redman, Faye H. Rodgers, Guillaume Sallé, Muhammad Zubair Shabbir, Geetha Sankaranarayanan, Janneke Wit, Kevin Howe, Neil Sargison, Eileen Devaney, Matthew Berriman, John S. Gilleard, James A. Cotton
Software Mentions: 8
Published: about 4 years ago

10.1186/s12863-020-00921-8

Genome wide analysis reveals genetic divergence between Goldsinny wrasse populations
Cited by: 5
Author(s): Eva Jansson, François Besnier, Ketil Malde, Carl André, Geir Dahle, Kevin A. Glover
Software Mentions: 8
Published: about 4 years ago

10.1099/mgen.0.000627

Current population structure and pathogenicity patterns of Ascochyta rabiei in Australia
Cited by: 8
Author(s): Ido Bar, Prabhakaran Thanjavur Sambasivam, Jenny Davidson, Lina M Farfan-Caceres, Robert C. Lee, Kristy Hobson, Kevin Moore, R Ford
Software Mentions: 8
Published: over 3 years ago

10.1186/s12711-019-0454-x

Sibship assignment to the founders of a Bangladeshi Catla catla breeding population
Cited by: 8
Author(s): Matthew Hamilton, Wagdy Mekkawy, John A. H. Benzie
Software Mentions: 8
Published: over 5 years ago

10.3389/fmicb.2021.686759

“Jumping Jack”: Genomic Microsatellites Underscore the Distinctiveness of Closely Related Pseudoperonospora cubensis and Pseudoperonospora humuli and Provide New Insights Into Their Evolutionary Past
Cited by: 2
Author(s): Marcin Nowicki, Denita Hadziabdic, Robert N. Trigiano, Sarah L. Boggess, Loukas Kanetis, Phillip A. Wadl, Peter S. Ojiambo, Marc A. Cubeta, Otmar Spring, Marco Thines, Fabian Runge, Brian E. Scheffler
Software Mentions: 8
Published: over 3 years ago

10.1186/s12870-020-02739-z

Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis
Cited by: 7
Author(s): Massimiliano Trenti, Silvia Lorenzi, P. Bianchedi, Daniele Grossi, O. Failla, M. S. Grando, F. Emanuelli
Software Mentions: 8
Published: almost 4 years ago

10.1111/eva.12932

Fine‐scale seascape genomics of an exploited marine species, the common cockle Cerastoderma edule, using a multimodelling approach
Cited by: 25
Author(s): Ilaria Coscia, Sophie B. Wilmes, Joseph E. Ironside, Alice Goward‐Brown, Enda O’Dea, Shelagh K. Malham, Allan D. McDevitt, Peter Robins
Software Mentions: 8
Published: almost 5 years ago

10.3390/microorganisms7110492

Genetic and Phenotypic Characterisation of a Saccharomyces cerevisiae Population of ‘Merwah’ White Wine
Cited by: 8
Author(s): Nadine Feghali, Warren Albertin, Edouard Tabet, Ziad Rizk, Angela Bianco, Giacomo Zara, Isabelle Masneuf‐Pomarède, Marilena Budroni
Software Mentions: 7
Published: about 5 years ago

10.1186/s12864-018-5145-4

Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices
Cited by: 21
Author(s): Emilien Peltier, Vikas Sharma, Maria Martí Raga, Miguel Roncoroni, Margaux Bernard, Vladimir Jiranek, Yves Gibon, Philippe Marullo
Software Mentions: 7
Published: about 6 years ago

10.1111/eva.12922

Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish
Cited by: 30
Author(s): Kara K S Layton, Brian Dempson, Paul V. R. Snelgrove, Steven J. Duffy, Amber Messmer, Ian G. Paterson, Nicholas W. Jeffery, Tony Kess, John B. Horne, Sarah J. Salisbury, Daniel E. Ruzzante, Paul Bentzen, David Côté, Cameron M. Nugent, Moira M. Ferguson, Jong S. Leong, Ben F. Koop, Ian Bradbury
Software Mentions: 7
Published: almost 5 years ago

10.3390/genes12050637

Insight into the Genetic Population Structure of Wild Red Foxes in Poland Reveals Low Risk of Genetic Introgression from Escaped Farm Red Foxes
Cited by: 2
Author(s): Heliodor Wierzbicki, Magdalena Zatoń‐Dobrowolska, Anna Mucha, Magdalena Moska
Software Mentions: 7
Published: over 3 years ago

10.7717/peerj.281

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Cited by: 1,961
Author(s): Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
Software Mentions: 7
Published: almost 11 years ago

10.7717/peerj.9391

Shannon diversity index: a call to replace the original Shannon’s formula with unbiased estimator in the population genetics studies
Cited by: 61
Author(s): Maciej K. Konopiński
Software Mentions: 7
Published: over 4 years ago

10.3389/fpls.2018.00029

Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth (Amaranthus palmeri) Populations Using Genotyping-by-sequencing (GBS)
Cited by: 26
Author(s): Anita Küpper, Harish Manmathan, Darci A. Giacomini, Eric Patterson, William B. McCloskey, Todd A. Gaines
Software Mentions: 7
Published: almost 7 years ago

10.1111/mec.15239

Host plant‐related genomic differentiation in the European cherry fruit fly, Rhagoletis cerasi
Cited by: 10
Author(s): Vid Baković, Hannes Schuler, Martin Schebeck, Jeffrey L. Feder, Christian Stauffer, Gregory J. Ragland
Software Mentions: 7
Published: about 5 years ago

10.1186/s12862-019-1510-4

Geographic isolation and climatic variability contribute to genetic differentiation in fragmented populations of the long-lived subalpine conifer Pinus cembra L. in the western Alps
Cited by: 26
Author(s): Endre György Tóth, Francine Tremblay, Johann M. Housset, Yves Bergeron, Christopher Carcaillet
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0222749

Brettanomyces bruxellensis wine isolates show high geographical dispersal and long persistence in cellars
Cited by: 12
Author(s): Alice Cibrario, Marta Avramova, Maria Dimopoulou, Maura Magani, Cécile Miot-Sertier, Albert Mas, María del Carmen Portillo Guisado, Patricia Ballestra, Warren Albertin, Isabelle Masneuf‐Pomarède, Marguerite Dols‐Lafargue
Software Mentions: 7
Published: about 5 years ago

10.1002/ece3.6802

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod
Cited by: 7
Author(s): William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale
Software Mentions: 7
Published: about 4 years ago

10.1093/aobpla/plab049

Genetic diversity and population structure of a global invader Mayweed chamomile (Anthemis cotula): management implications
Cited by: 2
Author(s): Subodh Adhikari, Samuel R. Revolinski, Sanford D. Eigenbrode, Ian C. Burke
Software Mentions: 7
Published: over 3 years ago

10.1186/s13071-020-04522-3

High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses
Cited by: 10
Author(s): Antoine Mignotte, Claire Garros, Simon Dellicour, Maude Jacquot, Marius Gilbert, Laëtitia Gardès, Thomas Balenghien, Maxime Duhayon, Ignace Rakotoarivony, Maïa de Wavrechin, Karine Huber
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-019-41886-8

Geographic separation and genetic differentiation of populations are not coupled with niche differentiation in threatened Kaiser’s spotted newt (Neurergus kaiseri)
Cited by: 24
Author(s): Forough Goudarzi, Mahmoud‐Reza Hemami, Loïs Rancilhac, Mansoureh Malekian, Sima Fakheran, Kathryn R. Elmer, Sebastian Steinfartz
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-67397-5

Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: over 4 years ago

10.1186/s13071-019-3860-6

Two-year longitudinal survey reveals high genetic diversity of Schistosoma mansoni with adult worms surviving praziquantel treatment at the start of mass drug administration in Uganda
Cited by: 18
Author(s): Christina L. Faust, Marco Crotti, Moses Arinaitwe, David Oguttu, Aidah Wamboko, Moses Adriko, Elizabeth K. Adekanle, Narcis B. Kabatereine, Edridah M. Tukahebwa, Alice Norton, Charlotte Gower, Joanne P. Webster, Poppy H. L. Lamberton
Software Mentions: 7
Published: about 5 years ago

10.1186/s12870-021-03142-y

Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
Cited by: 5
Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: over 3 years ago

10.1111/eva.12849

Single nucleotide polymorphisms reveal a genetic cline across the north‐east Atlantic and enable powerful population assignment in the European lobster
Cited by: 33
Author(s): Tom L. Jenkins, Charlie D. Ellis, Alexandros Triantafyllidis, Jamie R. Stevens
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pgen.1008593

Parallel and nonparallel genomic responses contribute to herbicide resistance in Ipomoea purpurea, a common agricultural weed
Cited by: 35
Author(s): Megan Van Etten, Kristin M. Lee, Shu‐Mei Chang, Regina S. Baucom
Software Mentions: 7
Published: almost 5 years ago

10.1111/mec.13928

Local adaptation at higher trophic levels: contrasting hyperparasite-pathogen infection dynamics in the field and laboratory
Cited by: 20
Author(s): Steven R. Parratt, Benoît Barrès, Rachel M. Penczykowski, Anna‐Liisa Laine
Software Mentions: 7
Published: almost 8 years ago

10.1038/s41598-019-38532-8

Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species
Cited by: 13
Author(s): Marcin Nowicki, Yichen Zhao, Sarah L. Boggess, Helge Fluess, Miriam Payá‐Milans, Margaret Staton, Logan C. Houston, Ðenita Hadziabdic, Robert N. Trigiano
Software Mentions: 7
Published: almost 6 years ago

10.1111/eva.12755

Into the weeds: Matching importation history to genetic consequences and pathways in two widely used biological control agents
Cited by: 16
Author(s): Julie V. Hopper, Kent F. McCue, Paul D. Pratt, Pierre Duchesne, Edwin D. Grosholz, Ruth A. Hufbauer
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.6378

Long‐lived marine species may be resilient to environmental variability through a temporal portfolio effect
Cited by: 1
Author(s): Jacek Maselko, Kimberly R. Andrews, Paul A. Hohenlohe
Software Mentions: 6
Published: over 4 years ago

10.1111/mpp.12819

Population genomics of an outbreak of the potato late blight pathogen,Phytophthora infestans, reveals both clonality and high genotypic diversity
Cited by: 14
Author(s): Sundy Maurice, Melanie Montes, Bent Nielsen, Lars Bødker, Michael D. Martin, Carina Grøntved Jønck, Rasmus Kjøller, Søren Rosendahl
Software Mentions: 6
Published: over 5 years ago

10.3390/genes12081240

Genomic Variation Shaped by Environmental and Geographical Factors in Prairie Cordgrass Natural Populations Collected across Its Native Range in the USA
Cited by: 0
Author(s): Jia Guo, Patrick J. Brown, A. Lane Rayburn, Carolyn J. Butts-Wilmsmeyer, Arvid Boe, DoKyoung Lee
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0239122

DArTSeq SNP-based markers revealed high genetic diversity and structured population in Ethiopian cowpea [Vigna unguiculata (L.) Walp] germplasms
Cited by: 26
Author(s): Selamawit Ketema, Bizuayehu Tesfaye, Gemechu Keneni, Berhanu Amsalu Fenta, Ermias Assefa, Nicolas Greliche, Eunice Machuka, Nasser Yao
Software Mentions: 6
Published: about 4 years ago

10.7554/eLife.46454

Combinations of Spok genes create multiple meiotic drivers in Podospora
Cited by: 53
Author(s): Aaron A. Vogan, Sandra Lorena Ament‐Velásquez, Alexandra Granger-Farbos, Jesper Svedberg, Eric Bastiaans, A.J.M. Debets, Virginie Coustou, Hélène Yvanne, Corinne Clavé, Sven J. Saupe, Hanna Johannesson
Software Mentions: 6
Published: over 5 years ago

10.3390/life11060531

Microsatellite Loci Reveal Genetic Diversity of Asian Callery Pear (Pyrus calleryana) in the Species Native Range and in the North American Cultivars
Cited by: 5
Author(s): Shiwani Sapkota, Sarah L. Boggess, Robert N. Trigiano, William E. Klingeman, Ðenita Hadziabdic, David R. Coyle, Bode A. Olukolu, Ryan Kuster, Marcin Nowicki
Software Mentions: 6
Published: over 3 years ago

10.1111/tbed.13754

Temporal patterns of vampire bat rabies and host connectivity in Belize
Cited by: 10
Author(s): Daniel J. Becker, Alice Broos, Laura M. Bergner, Diana K. Meza, Nancy B. Simmons, M. Brock Fenton, Sonia Altizer, Daniel G. Streicker
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-87296-7

Genomic prediction for growth using a low-density SNP panel in dromedary camels
Cited by: 9
Author(s): Morteza Bitaraf Sani, Javad Zare Harofte, Mohammad Hossein Banabazi, Saeid Esmaeilkhanian, Ali Naderi, Nader Salim, Abbas Teimoori, Ahmad Bitaraf, Mohammad Zadehrahmani, Pamela Anna Burger, V. Landi, Mohammad Silawi, Afsaneh Taghipour Sheshdeh, Mohammad Ali Faghihi
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.6537

Species diversity and phylogeography ofCornus kousa(Asian dogwood) captured by genomic and genic microsatellites
Cited by: 3
Author(s): Marcin Nowicki, Logan C. Houston, Sarah L. Boggess, Anthony S. Aiello, Miriam Payá‐Milans, Margaret Staton, Mitsuhiro Hayashida, Masahiro Yamanaka, Shigetoshi Eda, Robert N. Trigiano
Software Mentions: 6
Published: over 4 years ago

10.3390/genes11060599

Genome-Wide Diversity, Population Structure and Demographic History of Dromedaries in the Central Desert of Iran
Cited by: 5
Author(s): Morteza Bitaraf Sani, Javad Zare Harofte, Ahmad Bitaraf, Saeid Esmaeilkhanian, Mohammad Hossein Banabazi, Nader Salim, Abbas Teimoori, Ali Naderi, Mohammad Ali Faghihi, Pamela A. Burger, Mohammad Silawi, Afsaneh Taghipour Sheshdeh
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pntd.0008266

Impacts of host gender on Schistosoma mansoni risk in rural Uganda—A mixed-methods approach
Cited by: 14
Author(s): Suzan Trienekens, Christina L. Faust, Keila Meginnis, Lucy Pickering, Olivia Ericsson, Andrina Nankasi, Moses Arinaitwe, Edridah M. Tukahebwa, Poppy H. L. Lamberton
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-69101-z

STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts
Cited by: 21
Author(s): Sheila A. Kitchen, Gregory Von Kuster, Kate L. Vasquez Kuntz, Hannah Reich, Webb Miller, Sean Griffin, Nicole D. Fogarty, Iliana B. Baums
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0186488

Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing
Cited by: 17
Author(s): Niloofar Vaghefi, Julie R. Kikkert, Melvin D. Bolton, Linda E. Hanson, Gary A. Secor, Scot Nelson, Sarah J. Pethybridge
Software Mentions: 6
Published: about 7 years ago

10.1111/eva.13291

A comparison of microsatellites and genome‐wide SNPs for the detection of admixture brings the first molecular evidence for hybridization between Mustela eversmanii and M. putorius (Mustelidae, Carnivora)
Cited by: 11
Author(s): Lajos Szatmári, Tamás Cserkész, Levente Laczkó, József Lanszki, Cino Pertoldi, Alexei V. Abramov, Morten Elmeros, Barnabás Ottlecz, Zsolt Hegyeli, Gábor Sramkó
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pntd.0006698

Population genomics of Culiseta melanura, the principal vector of Eastern equine encephalitis virus in the United States
Cited by: 5
Author(s): John Soghigian, Theodore G. Andreadis, Goudarz Molaei
Software Mentions: 6
Published: over 6 years ago

10.3390/plants8090354

Population Genomic Approaches for Weed Science
Cited by: 14
Author(s): Sara L. Martin, Jean-Sébastien Parent, Martin Laforest, Eric R. Page, Julia M. Kreiner, Tracey James
Software Mentions: 6
Published: about 5 years ago

10.3390/genes12060824

Comparison of Selection Signatures between Korean Native and Commercial Chickens Using 600K SNP Array Data
Cited by: 4
Author(s): Sunghyun Cho, Prabuddha Manjula, Minjun Kim, Eunjin Cho, Dooho Lee, Seung Hwan Lee, Jun Heon Lee, Dongwon Seo
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.3673

Rapid song divergence leads to discordance between genetic distance and phenotypic characters important in reproductive isolation
Cited by: 21
Author(s): Emmanuel C. Nwankwo, Chryso Th. Pallari, Louis Hadjioannou, Andreas L. Ioannou, Ronald K. Mulwa, Alexander N. G. Kirschel
Software Mentions: 5
Published: about 7 years ago

10.1111/eva.12905

Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
Cited by: 21
Author(s): Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh
Software Mentions: 5
Published: almost 5 years ago

10.1111/eva.12873

A population genomics appraisal suggests independent dispersals for bitter and sweet manioc in Brazilian Amazonia
Cited by: 7
Author(s): Alessandro Alves‐Pereira, Charles R. Clement, Doriane Picanço Rodrigues, Elizabeth Ann Veasey, Gabriel Dequigiovanni, Santiago Linório Ferreyra Ramos, José Baldin Pinheiro, Anete Pereira de Souza, Maria Imaculada Zucchi
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.7212

Genetic studies of variousProsopisspecies (Leguminosae, SectionAlgarobia) co‐occurring in oases of the Atacama Desert (northern Chile)
Cited by: 2
Author(s): Cecilia Bessega, Carolina Luciana Pometti, Renée H. Fortunato, Francisca Greene, Calógero M. Santoro, Virginia McRostie
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pone.0243310

Genetic and morphometric variability between populations of Betula ×oycoviensis from Poland and Czechia: A revised view of the taxonomic treatment of the Ojców birch
Cited by: 2
Author(s): Rostislav Linda, I. Kuneš, Martin Baláš
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.9722

Population genomics reveals a mismatch between management and biological units in green abalone (Haliotis fulgens)
Cited by: 9
Author(s): Paulina Mejía-Ruíz, Ricardo Pérez‐Enríquez, Jorge Alberto Mares-Mayagoitia, Fausto Valenzuela‐Quiñonez
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.7484

Phylogenomic analyses confirm a novel invasive North AmericanCorbicula(Bivalvia: Cyrenidae) lineage
Cited by: 20
Author(s): Amanda E. Haponski, Diarmaid Ó Foighil
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-95486-6

Genetic diversity and population structure of Alternaria species from tomato and potato in North Carolina and Wisconsin
Cited by: 10
Author(s): Tika B. Adhikari, Norman Muzhinji, Dennis Halterman, Frank J. Louws
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2018.00987

Genome Scans Reveal Homogenization and Local Adaptations in Populations of the Soybean Cyst Nematode
Cited by: 6
Author(s): Anne-Frédérique Gendron St-Marseille, Étienne Lord, Pierre-Yves Véronneau, Jacques Brodeur, Benjamin Mimee
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-97556-1

De novo transcriptome assembly, polymorphic SSR markers development and population genetics analyses for southern corn rust (Puccinia polysora)
Cited by: 3
Author(s): Qiuyu Sun, Jie Liu, Keyu Zhang, Chong Huang, Leifu Li, Jiayu Dong, Yong Luo, Zhanhong Ma
Software Mentions: 5
Published: over 3 years ago

10.1111/eva.13219

Whole genome genotyping reveals discrete genetic diversity in north‐east Atlantic maerl beds
Cited by: 3
Author(s): Tom L. Jenkins, Marie‐Laure Guillemin, Cornelia Simon-Nutbrown, Heidi L. Burdett, Jamie R. Stevens, Viviana Peña
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-61216-7

A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm
Cited by: 72
Author(s): Simone Scalabrin, Lucile Toniutti, Gabriele Di Gaspero, Davide Scaglione, Gabriele Magris, Michele Vidotto, Sara Pinosio, Frederica Cattonaro, Federica Magni, Irena Jurman, Mario Cerutti, F. S. Liverani, Luciano Navarini, Lorenzo Del Terra, Gloria Pellegrino, Manuela Rosanna Ruosi, Nicola Vitulo, Giorgio Valle, Alberto Pallavicini, G. Graziosi, Patricia E. Klein, Nolan Bentley, Seth C. Murray, William Solano, Amin Al Hakimi, Timothy Schilling, Christophe Montagnon, Michèle Morgante, Benoît Bertrand
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.4333

Island biogeography and ecological modeling of the amblypygidPhrynus marginemaculatusin the Florida Keys archipelago
Cited by: 4
Author(s): Kenneth James Chapin, Daniel E. Winkler, Patrick Wiencek, Ingi Agnarsson
Software Mentions: 5
Published: over 6 years ago

10.1186/s12915-021-01084-3

Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis
Cited by: 31
Author(s): Andrey N. Shkoporov, Е. В. Хохлова, Niamh Stephens, Cara M. Hueston, Samuel Seymour, Andrew J. Hryckowian, Dimitri Scholz, R. Paul Ross, Colin Hill
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pntd.0007910

Dispersal patterns of Trypanosoma cruzi in Arequipa, Peru
Cited by: 4
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Arevalo-Nieto, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 5
Published: almost 5 years ago

10.1111/eva.12699

Weed evolution: Genetic differentiation among wild, weedy, and crop radish
Cited by: 16
Author(s): Amanda Charbonneau, David C. Tack, Allison Lale, J. E. Goldston, Mackenzie Caple, Emma Conner, Oz Barazani, Jotham Ziffer-Berger, Ian Dworkin, Jeffrey K. Conner
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pntd.0007876

Microsatellite analysis reveals connectivity among geographically distant transmission zones of Plasmodium vivax in the Peruvian Amazon: A critical barrier to regional malaria elimination
Cited by: 11
Author(s): Paulo Manrique, Julio Miranda-Alban, Jhonatan Alarcon-Baldeon, Roberson Ramirez, Gabriel Carrasco-Escobar, Henry Herrera, Mitchel Guzmán-Guzmán, Ángel Rosas Aguirre, Alejandro Llanos‐Cuentas, Joseph M. Vinetz, Ananías A. Escalante, Dionicia Gamboa
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2019.00597

Single Nucleotide Polymorphisms (SNPs) Reveal Sibship Among Founders of a Bangladeshi Rohu (Labeo rohita) Breeding Population
Cited by: 10
Author(s): Matthew Hamilton, Wagdy Mekkawy, Andrzej Kilian, John A. H. Benzie
Software Mentions: 5
Published: over 5 years ago

10.3390/plants10040752

Genetic Diversity and Population Structure of Potato Germplasm in RDA-Genebank: Utilization for Breeding and Conservation
Cited by: 9
Author(s): Kyung-Jun Lee, Sebastin Raveendar, Gyu‐Taek Cho, Mun-Sup Yoon, Gi-An Lee, Do-Yoon Hyun
Software Mentions: 5
Published: over 3 years ago

10.3390/plants9060712

In Vitro Propagation of an Endangered Helianthus verticillatus by Axillary Bud Proliferation
Cited by: 9
Author(s): Marzena Nowakowska, Žaklina Pavlović, Marcin Nowicki, Sarah L. Boggess, Robert N. Trigiano
Software Mentions: 4
Published: over 4 years ago

10.3390/microorganisms9030562

Large-Scale Genome Scanning within Exonic Regions Revealed the Contributions of Selective Sweep Prone Genes to Host Divergence and Adaptation in Magnaporthe oryzae Species Complex
Cited by: 3
Author(s): Guohua Duan, Jiandong Bao, Xiaomin Chen, Jiahui Xie, Yuchan Liu, Huiquan Chen, Huakun Zheng, Wei Tang, Zonghua Wang
Software Mentions: 4
Published: almost 4 years ago

10.3390/insects11120834

Low Genetic Variability in Bemisia tabaci MEAM1 Populations within Farmscapes of Georgia, USA
Cited by: 16
Author(s): Saurabh Gautam, Michael S. Crossley, Bhabesh Dutta, Timothy Coolong, Alvin M. Simmons, Andre da Silva, William E. Snyder, Rajagopalbabu Srinivasan
Software Mentions: 4
Published: about 4 years ago

10.7717/peerj.9818

Applied phylogeography ofCyclopia intermedia(Fabaceae) highlights the need for ‘duty of care’ when cultivating honeybush
Cited by: 4
Author(s): Nicholas C. Galuszynski, Alastair J. Potts
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.4457

Habitat or temporal isolation: Unraveling herbivore-parasitoid speciation patterns using double digest RADseq
Cited by: 9
Author(s): Y. Miles Zhang, Amber Bass, Diana Catalina Fernández, Barbara J. Sharanowski
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.5239

Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii)
Cited by: 12
Author(s): Daniel E. Winkler, Kenneth James Chapin, F. Ochsenbein, J. David Garmon, Brandon S. Gaut, Travis E. Huxman
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11092702

Trait Plasticity among Invasive Populations of the Ant Technomyrmex brunneus in Japan
Cited by: 3
Author(s): Diyona Putri, Masanori Yokozawa, Toshiro Yamanaka, Adam L. Cronin
Software Mentions: 4
Published: over 3 years ago

10.1186/s42238-020-00036-y

A single nucleotide polymorphism assay sheds light on the extent and distribution of genetic diversity, population structure and functional basis of key traits in cultivated north American cannabis
Cited by: 12
Author(s): Philippe Henry, Surender Khatodia, Karan Kapoor, Britni Gonzales, Alexis Middleton, Kevin C. Hong, Aaron Hilyard, Steve L. Johnson, Davis Allen, Zachary Chester, Dan Jin, José Carlos Rodriguez Jule, Iain F. Wilson, Manu P. Gangola, Jason Broome, Deron Caplan, Dinesh Adhikary, Michael K. Deyholos, Michael Morgan, Oliver W. Hall, Brent J. Guppy, Cindy S. Orser
Software Mentions: 4
Published: over 4 years ago

10.1002/ece3.7447

The impact of aquaculture on the genetics and distribution of the onuphid annelid Diopatra biscayensis
Cited by: 2
Author(s): Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubois, Kenneth M. Halanych, Sarah A. Woodin
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.7531

Population differences in Chinook salmon (Oncorhynchus tshawytscha) DNA methylation: Genetic drift and environmental factors
Cited by: 6
Author(s): Clare J. Venney, Ben J. G. Sutherland, Terry D. Beacham, Daniel D. Heath
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2020.01075

Populations of the Parasitic Plant Phelipanche ramosa Influence Their Seed Microbiota
Cited by: 23
Author(s): Sarah Huet, Jean‐Bernard Pouvreau, Erwan Delage, Sabine Delgrange, Coralie Marais, Muriel Bahut, Philippe Delavault, Philippe Simier, Lucie Poulin
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2021.730258

One Step Away From Extinction: A Population Genomic Analysis of A Narrow Endemic, Tropical Plant Species
Cited by: 4
Author(s): Thais M. Teixeira, Alison G. Nazareno
Software Mentions: 4
Published: about 3 years ago

Projects: cran: poppr

Papers Mentioning poppr 251