cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-33944-4

Case studies on potential G-quadruplex-forming sequences from the bacterial orders Deinococcales and Thermales derived from a survey of published genomes
Cited by: 32
Author(s): Yun Ding, Aaron M. Fleming, Cynthia J. Burrows
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0204317

Association of metformin administration with gut microbiome dysbiosis in healthy volunteers
Cited by: 85
Author(s): Ilze Elbere, Ineta Kalniņa, Ivars Silamiķelis, Ilze Konrāde, Linda Zaharenko, Kristine Sekace, Ilze Radoviča-Spalviņa, Dāvids Fridmanis, Dita Gudrā, Valdis Pīrāgs, Jānis Kloviņš
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0219986

Year-round distribution, activity patterns and habitat use of a poorly studied pelagic seabird, the fluttering shearwater Puffinus gavia
Cited by: 5
Author(s): Martin Berg, Jannie Fries Linnebjerg, Graeme A. Taylor, Stefanie M. H. Ismar-Rebitz, Mike Bell, Chris P. Gaskin, Susanne Åkesson, Matt J. Rayner
Software Mentions: 6
Published: almost 7 years ago

10.1186/s42523-020-00044-6

An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range
Cited by: 9
Author(s): Janneke Schreuder, Francisca C. Velkers, Ruth Bouwstra, Nancy Beerens, J.A. Stegeman, Willem F. de Boer, Pim van Hooft, A.R.W. Elbers, Alex Bossers, Stephanie D. Jurburg
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0204376

Sensitivity analyses for improving sulfur management strategies in winter oilseed rape
Cited by: 4
Author(s): Emilie Poisson, Sophie Brunel‐Muguet, F. Kauffmann, Jacques Trouverie, Jean‐Christophe Avice, Alain Mollier
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41392-020-00437-8

CREBBP/EP300 mutations promoted tumor progression in diffuse large B-cell lymphoma through altering tumor-associated macrophage polarization via FBXW7-NOTCH-CCL2/CSF1 axis
Cited by: 72
Author(s): Yan‐Jiun Huang, Kedan Cai, Pengpeng Xu, Li Wang, Chuanxin Huang, Ying Fang, Shu Cheng, Xiao Jian Sun, Feng Liu, Jinyan Huang, Mengmeng Ji, Wei‐Li Zhao
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2021.676173

Interleukin-17A Causes Osteoarthritis-Like Transcriptional Changes in Human Osteoarthritis-Derived Chondrocytes and Synovial Fibroblasts In Vitro
Cited by: 20
Author(s): Jolet Y Mimpen, Mathew Baldwin, Adam P. Cribbs, Martin Philpott, Andrew Carr, Stephanie G. Dakin, Sarah Snelling
Software Mentions: 6
Published: about 5 years ago

10.3390/antiox10030351

Physiological and Biochemical Dissection Reveals a Trade-Off between Antioxidant Capacity and Heat Tolerance in Bread Wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Mohammed Mohi-Ud-Din, Md. Nurealam Siddiqui, Motiar Rohman, S. V. Krishna Jagadish, Jalal Uddin Ahmed, Mohamed M. Hassan, Akbar Hossain, Tofazzal Islam
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2021.632798

Comprehensive Transcriptomic Analysis Identifies Novel Antiviral Factors Against Influenza A Virus Infection
Cited by: 11
Author(s): Ao Zhou, Dong Xia, Mengyun Liu, Bin Tang
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0192834

Thermal physiology of Amazonian lizards (Reptilia: Squamata)
Cited by: 27
Author(s): Luisa Maria Diele‐Viegas, Laurie J. Vitt, Barry Sinervo, Guarino Rinaldi Colli, Fernanda P. Werneck, Donald B. Miles, William E. Magnusson, Juan Carlos Santos, Carla M. Sette, Gabriel Henrique de Oliveira Caetano, Emerson Guedes Pontes, Teresa Cristina Sauer Ávila-Pires
Software Mentions: 6
Published: over 8 years ago

10.1186/s12915-021-01034-z

Single-cell transcriptomics reveals the effect of PD-L1/TGF-β blockade on the tumor microenvironment
Cited by: 14
Author(s): Yoong Wearn Lim, Garry L. Coles, Savreet K. Sandhu, D. S. Johnson, Adam S. Adler, Erica L. Stone
Software Mentions: 6
Published: about 5 years ago

10.1080/17453674.2019.1624339

Reduced periprosthetic fracture rate when changing from a tapered polished stem to an anatomical stem for cemented hip arthroplasty: an observational prospective cohort study with a follow-up of 2 years
Cited by: 17
Author(s): Jabbar Mohammed, Sebastian Mukka, Carl-Johan Hedbeck, Ghazi Chammout, Max Gordon, Olof Sköldenberg
Software Mentions: 6
Published: about 7 years ago

10.1186/s13568-016-0191-2

Automation of antimicrobial activity screening
Cited by: 8
Author(s): Samuel P. Forry, Meggan C. Madonna, Daneli López-Pérez, Nancy J. Lin, Madeleine D. Pasco
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-019-44370-5

Rensch’s rule in avian lice: contradictory allometric trends for sexual size dimorphism
Cited by: 6
Author(s): Imre Sándor Piross, Andrea Harnos, Lajos Rózsa
Software Mentions: 6
Published: about 7 years ago

10.3389/fnmol.2021.723317

Dynamic Changes in the Levels of Amyloid-β42 Species in the Brain and Periphery of APP/PS1 Mice and Their Significance for Alzheimer’s Disease
Cited by: 13
Author(s): Liding Zhang, Changwen Yang, Yanqing Li, Shiqi Niu, Xiaohan Liang, Zhihong Zhang, Qi Luo, Haiming Luo
Software Mentions: 6
Published: almost 5 years ago

10.2196/24475

Benchmarking Triage Capability of Symptom Checkers Against That of Medical Laypersons: Survey Study
Cited by: 27
Author(s): Malte L Schmieding, Rudolf Mörgeli, Maike A L Schmieding, Markus A. Feufel, Felix Balzer
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-021-01144-4

Trophic level drives the host microbiome of soil invertebrates at a continental scale
Cited by: 14
Author(s): Dong Zhu, Manuel Delgado‐Baquerizo, Jing Ding, Michael R. Gillings, Yong‐Guan Zhu
Software Mentions: 6
Published: almost 5 years ago

10.3389/fimmu.2021.724015

Transcriptional, Epigenetic, and Functional Reprogramming of Monocytes From Non-Human Primates Following Chronic Alcohol Drinking
Cited by: 11
Author(s): Sloan A. Lewis, Suhas Sureshchandra, Brianna Doratt, Vanessa Jiménez, Cara Stull, Kathleen A. Grant, Ilhem Messaoudi
Software Mentions: 6
Published: almost 5 years ago

10.3389/fnbeh.2020.581296

A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats
Cited by: 6
Author(s): Valérie Daugé, Catherine Philippe, Mahendra Mariadassou, Olivier Rué, Jean‐Charles Martin, Marie Rossignol, Nathalie Dourmap, Ljubica Svilar, Franck Tourniaire, Magali Monnoye, Déborah Jardet, Marie Bangratz, Sophie Holowacz, Sylvie Rabot, Laurent Naudon
Software Mentions: 6
Published: over 5 years ago

10.1084/jem.20200606

Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Cited by: 31
Author(s): Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Étienne Patin, Oliver J. Harrison, Lluı́s Quintana-Murci, Ira Mellman, Darragh Duffy, Matthew L. Albert
Software Mentions: 6
Published: over 5 years ago

10.5334/jors.166

Web Tool for Navigating and Plotting SomaLogic ADAT Files
Cited by: 19
Author(s): Foo Cheung, Giovanna Fantoni, Maria Conner, Brian Sellers, Yuri Kotliarov, Julián Candia, Katherine E. Stagliano, Angélique Biancotto
Software Mentions: 6
Published: almost 9 years ago

10.1186/s40168-016-0207-9

Extending colonic mucosal microbiome analysis—assessment of colonic lavage as a proxy for endoscopic colonic biopsies
Cited by: 41
Author(s): Euan Watt, Matthew Gemmell, Susan H. Berry, Mark A. Glaire, Freda Farquharson, Petra Louis, Graeme I. Murray, Emad El-Omar, Georgina L. Hold
Software Mentions: 6
Published: over 9 years ago

10.3389/fnins.2021.700253

Machine Learning in Modeling of Mouse Behavior
Cited by: 4
Author(s): Marjan Gharagozloo, Abdelaziz Amrani, Kevin Wittingstall, Andrew Hamilton-Wright, Denis Gris
Software Mentions: 6
Published: almost 5 years ago

10.3390/genes12091300

Mitochondrial Genetic Heterogeneity in Leber’s Hereditary Optic Neuropathy: Original Study with Meta-Analysis
Cited by: 7
Author(s): Rajan Kumar Jha, Chhavi Dawar, Qurratulain Hasan, Akhilesh Pujar, Gaurav Gupta, Venugopalan Y Vishnu, Ramesh Kekunnaya, Kumarasamy Thangaraj
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0192023

Spatiotemporal patterns of the macrofaunal community structure in the East China Sea, off the coast of Zhejiang, China, and the impact of the Kuroshio Branch Current
Cited by: 5
Author(s): Yong Xu, Fei Yu, Xinzheng Li, Lin Ma, Dong Dong, Qi Kou, Jixing Sui, Zhibin Gan, Lin Gong, Mei Yang, Yue-Yun Wang, Yue Sun, Jinbao Wang, Hongfa Wang
Software Mentions: 6
Published: over 8 years ago

10.3389/fmolb.2020.582911

Comprehensive Analysis of the Relationships Between Tumor Mutation Burden With Immune Infiltrates in Cervical Cell Carcinoma
Cited by: 9
Author(s): Cankun Zhou, Chaomei Li, Shunqing Peng, Liangcheng Zhou, Huan Li
Software Mentions: 6
Published: over 5 years ago

10.1084/jem.20192275

<i>NCKAP1L</i> defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation
Cited by: 44
Author(s): Carla Castro, Michelle Rosenzwajg, Raphaël Carapito, Mohammad Shahrooei, Martina Konantz, Amjad Khan, Zhichao Miao, Miriam Groß, Thibaud Tranchant, Mirjana Radosavljevic, Nicodème Paul, Tristan Stemmelen, Fabien Pitoiset, Aurélie Hirschler, Benoît Nespola, Anne Molitor, Véronique Rolli, Angélique Pichot, Laura Faletti, Bruno Rinaldi, Sylvie Friant, Mark Mednikov, Hatice Karaüzüm, M. Javad Aman, Christine Carapito, Claudia Lengerke, Vahid Ziaee, Wafaa Eyaid, Stephan Ehl, Fayhan Alroqi, Nima Parvaneh, Seiamak Bahram
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-017-08844-8

Scale-dependent changes in the functional diversity of macrophytes in subtropical freshwater lakes in south China
Cited by: 16
Author(s): Hui Fu, Jun Zhong, Shaowen Fang, Jianmin Hu, Caixia Guo, Qian Lei, Guixiang Yuan, Taotao Dai, Zhongqiang Li, Meng Zhang, Wei Li, Jun Xu, Ting Cao
Software Mentions: 6
Published: almost 9 years ago

10.1186/s12885-021-08431-1

Five metastasis-related mRNAs signature predicting the survival of patients with liver hepatocellular carcinoma
Cited by: 7
Author(s): Chao Chen, Yan Qun Liu, Shi Qiu, Ya Li, Ning Jun Yu, Kang Liu, Li Ming Zhong
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms8091367

Lifestyle, Lineage, and Geographical Origin Influence Temperature-Dependent Phenotypic Variation across Yeast Strains during Wine Fermentation
Cited by: 4
Author(s): Rebecca C. Deed, Lisa I. Pilkington
Software Mentions: 6
Published: almost 6 years ago

10.3390/plants10071324

Heterogeneous Impact of Water Warming on Exotic and Native Submerged and Emergent Plants in Outdoor Mesocosms
Cited by: 0
Author(s): Morgane Gillard, Jean-Pierre Caudal, Carole Deleu, Gabrielle Thiébaut
Software Mentions: 6
Published: almost 5 years ago

10.3390/plants10061039

Comparative Analysis of Re-Annotated Genes Provides Insight into Evolutionary Divergence and Expressions of Aquaporin Family in Pepper
Cited by: 2
Author(s): Yeon Mi Lee, Geun Young Chae, Min Kyung Kim, Seungill Kim
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms9071409

Distribution and Diversity of Beauveria in Boreal Forests of Northern European Russia
Cited by: 3
Author(s): И. А. Казарцев, Georgy R. Lednev
Software Mentions: 6
Published: almost 5 years ago

10.18632/aging.202718

TMBIM6, a potential virus target protein identified by integrated multiomics data analysis in SARS-CoV-2-infected host cells
Cited by: 4
Author(s): Qizheng Han, Junhao Wang, Haihua Luo, Lei Li, Xinya Lu, Aihua Liu, Yongqiang Deng, Yong Jiang
Software Mentions: 6
Published: over 5 years ago

10.1101/2021.05.27.21257952

Immune transcriptomes from hospitalized patients infected with the SARS-CoV-2 variants B.1.1.7 and B.1.1.7 carrying the E484K escape mutation
Cited by: 3
Author(s): Hye Kyung Lee, Ludwig Knabl, Manuel Wieser, Anna Mur, August Zabernigg, Jana Schumacher, Norbert Kaiser, Priscilla A. Furth, Lothar Hennighausen
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-021-02339-6

Functional mapping of androgen receptor enhancer activity
Cited by: 15
Author(s): Chia Chi Flora Huang, Shreyas Lingadahalli, Tunç Morova, Doğancan Özturan, Eugene Hu, Ivan Pak Lok Yu, Simon Linder, Marlous Hoogstraat, Suzan Stelloo, Funda Sar, Henk van der Poel, Umut Berkay Altıntaş, Mohammadali Saffarzadeh, Stéphane Le Bihan, Brian McConeghy, Bengul Gokbayrak, Felix Y. Feng, Martin Gleave, Andries M. Bergman, Colin C. Collins, Faraz Hach, Wilbert Zwart, Eldon Emberly, Nathan A. Lack
Software Mentions: 6
Published: about 5 years ago

10.1038/s41436-018-0337-5

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions
Cited by: 65
Author(s): Sulev Reisberg, Kristi Krebs, Maarja Lepamets, Mart Kals, Reedik Mägi, Kristjan Metsalu, Volker M. Lauschke, Jaak Vilo, Lili Milani
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0188972

Adiposity QTL Adip20 decomposes into at least four loci when dissected using congenic strains
Cited by: 4
Author(s): Cailu Lin, Brad D. Fesi, Michael Marquis, Natalia P. Bosak, Anna Lysenko, Mohammed Amin Koshnevisan, Fujiko Duke, Maria L. Theodorides, Theodore M. Nelson, Amanda H. McDaniel, Mauricio Avigdor, Charles J. Arayata, Lauren Shaw, Alexander A. Bachmanov, Danielle R. Reed
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-020-77055-5

Identification of transcription factor co-regulators that drive prostate cancer progression
Cited by: 11
Author(s): Manjunath Siddappa, Sajad A. Wani, Mark D. Long, Damien A. Leach, Ewy A. Mathé, Charlotte Bevan, Moray J. Campbell
Software Mentions: 6
Published: over 5 years ago

10.2196/12376

Toward an Objective Assessment of Implementation Processes for Innovations in Health Care: Psychometric Evaluation of the Normalization Measure Development (NoMAD) Questionnaire Among Mental Health Care Professionals
Cited by: 27
Author(s): Christiaan Vis, Jeroen Ruwaard, Tracy Finch, Tim Rapley, Derek de Beurs, Henk F. van Stel, B. van Lettow, Mayke Mol, Annet Kleiboer, Heleen Riper, Jan Smit
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms9010002

Genomic Analysis of Antimicrobial Resistance Genotype-to-Phenotype Agreement in Helicobacter pylori
Cited by: 15
Author(s): Tal Domanovich-Asor, Yair Motro, Boris Khalfin, Hillary A. Craddock, Avi Peretz, Jacob Moran-Gilad
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-14-S5-S10

An optimized algorithm for detecting and annotating regional differential methylation
Cited by: 101
Author(s): Shengyong Li, Francine E. Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross L. Levine, Bik To, Ian D. Lewis, Anna L. Brown, Richard J. D’Andrea, Ari Melnick, Christopher E. Mason
Software Mentions: 6
Published: about 13 years ago

10.3389/fnins.2021.644757

The Impacts of Age and Sex in a Mouse Model of Childhood Narcolepsy
Cited by: 10
Author(s): A Coffey, Adam Joyal, Akihiro Yamanaka, Thomas E. Scammell
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0237881

Identification of key odorants in honeysuckle by headspace-solid phase microextraction and solvent-assisted flavour evaporation with gas chromatography-mass spectrometry and gas chromatograph-olfactometry in combination with chemometrics
Cited by: 6
Author(s): Keran Su, Xin Zhang, Shao-Quan Liu, LiHui Jia, Benjamin Lassabliere, Kim Huey Ee, Aileen Pua, Rui Min Vivian Goh, Jingcan Sun, Bin Yu, XiaoXue Hu
Software Mentions: 6
Published: almost 6 years ago

10.3389/fnut.2019.00045

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
Cited by: 135
Author(s): Kimberly A. Lackey, Janet E. Williams, Courtney L. Meehan, Jessica A. Zachek, Elizabeth D. Benda, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Linda J. Kvist, Gloria E. Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Michelle K. McGuire
Software Mentions: 6
Published: about 7 years ago

10.3389/fnins.2017.00363

The Role of the Interplay between Stimulus Type and Timing in Explaining BCI-Illiteracy for Visual P300-Based Brain-Computer Interfaces
Cited by: 12
Author(s): Roberta Carabalona
Software Mentions: 6
Published: almost 9 years ago

10.1038/s41598-020-80618-1

Field evaluation of two mosquito traps in Zhejiang Province, China
Cited by: 3
Author(s): Juan Hou, Yinping Wu, Zhiyuan Mao, Zhu Xinhong, Yuheng Wu, Qinmei Liu, Jinna Wang, Tianqi Li, Zhenyu Gong, Xuanjun Dong, Wang Zhen
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8111754

Comparison of the Performance and Microbial Community Structure of Two Outdoor Pilot-Scale Photobioreactors Treating Digestate
Cited by: 9
Author(s): Aïda Bani, Katia Parati, Anna Pozzi, Cristina Previtali, Graziella Bongioni, Andrea Pizzera, Elena Ficara, Micol Bellucci
Software Mentions: 6
Published: over 5 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0167747

Transcriptomic Changes in Liver of Young Bulls Caused by Diets Low in Mineral and Protein Contents and Supplemented with n-3 Fatty Acids and Conjugated Linoleic Acid
Cited by: 8
Author(s): Sara Pegolo, Alessio Cecchinato, Núria Mach, Massimiliano Babbucci, Marianna Pauletto, Luca Bargelloni, Stefano Schiavon, Giovanni Bittante
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0075136

Synergistic Re-Activation of Epigenetically Silenced Genes by Combinatorial Inhibition of DNMTs and LSD1 in Cancer Cells
Cited by: 31
Author(s): Han Han, Xiaojing Yang, Kurinji Pandiyan, Gangning Liang
Software Mentions: 6
Published: almost 13 years ago

10.18632/aging.202603

Functional analysis of brain derived neurotrophic factor (BDNF) in Huntington’s disease
Cited by: 6
Author(s): Zhike Zhou, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.102746

Identification of an immune-related risk signature for predicting prognosis in clear cell renal cell carcinoma
Cited by: 34
Author(s): Xiaoliang Hua, Juan Chen, Yang Su, Chaozhao Liang
Software Mentions: 6
Published: over 6 years ago

10.3389/fmolb.2021.619110

Screening and Identification of Key Common and Specific Genes and Their Prognostic Roles in Different Molecular Subtypes of Breast Cancer
Cited by: 7
Author(s): Na Sun, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Yi Zhang, Fei Han, Xiaowei Qi
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-79736-7

BIRC5 is a prognostic biomarker associated with tumor immune cell infiltration
Cited by: 37
Author(s): Lijun Xu, Wenpeng Yu, Han Xiao, Lin Kang
Software Mentions: 6
Published: over 5 years ago

10.1101/2021.07.06.21259528

Pre-vaccination and early B cell signatures predict antibody response to SARS-CoV-2 mRNA vaccine
Cited by: 2
Author(s): Lela Kardava, Nicholas Rachmaninoff, Lau Ww, Buckner Cm, Krittin Trihemasava, de Assis Fl, W Wang, X Zhang, Y Wang, Cheng Feng Chiang, Sandeep Narpala, Robert Reger, McCormack Ge, Seamon Ca, Childs Rw, A. F. Suffredini, Strich, Chertow Ds, Davey Rt, Sneller Mc, Sarah O’Connell, Li Y, Adrian B. McDermott, Tae‐Wook Chun, Fauci As, Tsang Js, Susan Moir
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41396-021-00895-0

Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets
Cited by: 22
Author(s): Danièle De Luca, Roberta Piredda, Diana Sarno, Wiebe H. C. F. Kooistra
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms7100473

Rapid Bacterial Community Changes during Vermicomposting of Grape Marc Derived from Red Winemaking
Cited by: 18
Author(s): María Gómez-Brandòn, Manuel Aira, Allison R. Kolbe, Nariane de Andrade, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms9010076

Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics
Cited by: 44
Author(s): Katharina Kesy, Matthias Labrenz, Brittan S. Scales, Bernd Kreikemeyer, Sonja Oberbeckmann
Software Mentions: 6
Published: over 5 years ago

10.3389/fbioe.2018.00200

Harvest of the Oleaginous Microalgae Scenedesmus obtusiusculus by Flocculation From Culture Based on Natural Water Sources
Cited by: 17
Author(s): Felix Bracharz, Daniel Helmdach, Isabel Aschenbrenner, Nils Funck, Daniel Wibberg, Anderson M. Winkler, Frank Bohnen, Jörn Kalinowski, Norbert Mehlmer, Thomas Brück
Software Mentions: 6
Published: over 7 years ago

10.1038/s42003-021-02012-5

High and specific diversity of protists in the deep-sea basins dominated by diplonemids, kinetoplastids, ciliates and foraminiferans
Cited by: 22
Author(s): Alexandra Schoenle, Manon Hohlfeld, Karoline Hermanns, Frédéric Mahé, Colomban de Vargas, Frank Nitsche, Hartmut Arndt
Software Mentions: 6
Published: about 5 years ago

10.1186/s13046-020-01739-z

LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: over 5 years ago

10.1101/2021.09.08.21263284

Robust immune response to the BNT162b mRNA vaccine in an elderly population vaccinated 15 months after recovery from COVID-19
Cited by: 12
Author(s): Hye Kyung Lee, Ludwig Knabl, Ludwig Knabl, Sebastian Kapferer, Birgit Pateter, Mary Walter, Priscilla A. Furth, Lothar Hennighausen
Software Mentions: 6
Published: almost 5 years ago

10.3390/microorganisms8091449

Population Dynamics between Erwinia amylovora, Pantoea agglomerans and Bacteriophages: Exploiting Synergy and Competition to Improve Phage Cocktail Efficacy
Cited by: 18
Author(s): Steven Gayder, Michael Parcey, Darlene Nesbitt, Alan J. Castle, A. M. Svircev
Software Mentions: 6
Published: almost 6 years ago

10.3390/microorganisms8020279

Diversity of Bacterial Biosynthetic Genes in Maritime Antarctica
Cited by: 9
Author(s): Adriana Rego, António G G Sousa, João P. Santos, Francisco Pascoal, João Canário, Pedro N. Leão, Catarina Magalhães
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms9051060

Microbial Composition of SCOBY Starter Cultures Used by Commercial Kombucha Brewers in North America
Cited by: 42
Author(s): Keisha Harrison, Chris Curtin
Software Mentions: 6
Published: about 5 years ago

10.1038/s42003-021-02044-x

Cooperative root graft networks benefit mangrove trees under stress
Cited by: 2
Author(s): Alejandra G. Vovides, Marie-Christin Wimmler, Flalk Schrewe, Thorsten Balke, Martin Zwanzig, Cyril Piou, Étienne Delay, Jorge López‐Portillo, Uta Berger
Software Mentions: 6
Published: about 5 years ago

10.1128/mSystems.00613-20

Interplay between Position-Dependent Codon Usage Bias and Hydrogen Bonding at the 5ʹ End of ORFeomes
Cited by: 6
Author(s): Juan C. Villada, Maria F. Duran, Patrick K. H. Lee
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12859-020-3404-2

IPCO: Inference of Pathways from Co-variance analysis
Cited by: 3
Author(s): Mrinmoy Das, Tarini Shankar Ghosh, Ian B. Jeffery
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms8111741

Bile Acid Signal Molecules Associate Temporally with Respiratory Inflammation and Microbiome Signatures in Clinically Stable Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephanie Flynn, F. Jerry Reen, José A. Caparrós-Martín, David F. Woods, Jörg Peplies, Sarath Ranganathan, Stephen M. Stick, Fergal O’Gara
Software Mentions: 6
Published: over 5 years ago

10.3390/ani10091612

Efficacy of Management and Monitoring Methods to Prevent Post-Harvest Losses Caused by Rodents
Cited by: 1
Author(s): Inge Krijger, Gerrit Gort, Steven R. Belmain, P.W.G. Groot Koerkamp, R.B. Shafali, B.G. Meerburg
Software Mentions: 6
Published: almost 6 years ago

10.3389/fimmu.2021.707830

In-Depth Profiling of T-Cell Responsiveness to Commonly Recognized CMV Antigens in Older People Reveals Important Sex Differences
Cited by: 6
Author(s): Bernhard Reus, Stefano Caserta, Martin Larsen, George W. Morrow, Aalia Bano, Michael Hallensleben, Chakravarthi Rajkumar, Alejandra Pera, Florian Kern
Software Mentions: 6
Published: almost 5 years ago

10.3390/microorganisms9020208

Aquatic Bacterial Diversity, Community Composition and Assembly in the Semi-Arid Inner Mongolia Plateau: Combined Effects of Salinity and Nutrient Levels
Cited by: 29
Author(s): Xiangming Tang, Guobo Xie, Kwang‐Tsao Shao, Wei Tian, Guang Gao, Boqiang Qin
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-020-01524-w

Substrate thermal properties influence ventral brightness evolution in ectotherms
Cited by: 6
Author(s): Jonathan Goldenberg, Liliana D’Alba, Karen Bisschop, Bram Vanthournout, Matthew D. Shawkey
Software Mentions: 6
Published: over 5 years ago

10.1186/s12885-015-1993-3

TGFβ isoforms and receptors mRNA expression in breast tumours: prognostic value and clinical implications
Cited by: 23
Author(s): Chenfeng Chen, Kong‐Nan Zhao, Paul P. Masci, Sunil R. Lakhani, Annika Antonsson, Peter T. Simpson, Luis Vitetta
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: over 7 years ago

10.1128/mSystems.00540-20

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Cited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: almost 6 years ago

10.3390/microorganisms8030368

Optimization of Preservation Methods Allows Deeper Insights into Changes of Raw Milk Microbiota
Cited by: 8
Author(s): Alexandre J.K. Ouamba, Gisèle LaPointe, Simon Dufour, Denis Roy
Software Mentions: 6
Published: over 6 years ago

10.7554/eLife.58139

Sex-specific effects of cooperative breeding and colonial nesting on prosociality in corvids
Cited by: 20
Author(s): Lisa Horn, Thomas Bugnyar, Michael Griesser, Marietta Hengl, Ei-Ichi Izawa, Tim Oortwijn, Christiane Rössler, Clara Scheer, Martina Schiestl, Masaki Suyama, Alex H. Taylor, Lisa-Claire Vanhooland, Auguste Marie Philippa von Bayern, Yvonne Zürcher, Jorg J. M. Massen
Software Mentions: 6
Published: over 5 years ago

10.3389/fpls.2019.01184

Ramf: An Open-Source R Package for Statistical Analysis and Display of Quantitative Root Colonization by Arbuscular Mycorrhiza Fungi
Cited by: 2
Author(s): Marco Chiapello, Debatosh Das, Caroline Gutjahr
Software Mentions: 6
Published: over 6 years ago

10.3389/fpls.2020.570001

Experimental Warming Changes Phenology and Shortens Growing Season of the Dominant Invasive Plant Bromus tectorum (Cheatgrass)
Cited by: 10
Author(s): Armin J. Howell, Daniel E. Winkler, Michala L. Phillips, Brandon E. McNellis, Sasha C. Reed
Software Mentions: 6
Published: over 5 years ago

10.1186/s13059-014-0459-2

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi
Cited by: 106
Author(s): Xiaofang Jiang, Ashley Peery, Andrew Brantley Hall, Atashi Sharma, Xiaoguang Chen, Robert M. Waterhouse, Aleksey Komissarov, Michelle M. Riehle, Yogesh S. Shouche, Maria V. Sharakhova, Daniel Lawson, Nazzy Pakpour, Peter Arensburger, Victoria L M Davidson, Karin Eiglmeier, Scott J. Emrich, Phillip George, Ryan Kennedy, Shrinivasrao P. Mane, G. Maslen, Chioma Oringanje, Yumin Qi, Robert E. Settlage, Marta Tojo, José M. C. Tubío, Maria Unger, Bo Wang, Kenneth D. Vernick, José M. C. Ribeiro, Anthony A. James, Kristin Michel, Michael A. Riehle, Shirley Luckhart, Igor V. Sharakhov, Zhijian Tu
Software Mentions: 6
Published: almost 12 years ago

10.1038/s41598-020-77878-2

Recent land use and management changes decouple the adaptation of livestock diversity to the environment
Cited by: 9
Author(s): Elena Velado‐Alonso, Ignacio Morales‐Castilla, Antonio Gómez‐Sal
Software Mentions: 6
Published: over 5 years ago

10.1186/s13046-019-1372-z

Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancer
Cited by: 61
Author(s): Apostolos Zaravinos, Constantinos Roufas, Majdi Nagara, Beatriz de Lucas, Maria Oblovatskaya, Christodoulos Efstathiades, Christos Dimopoulos, Georgios D. Ayiomamitis
Software Mentions: 6
Published: almost 7 years ago

10.1186/s13567-016-0374-5

Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7
Cited by: 7
Author(s): Alexander Corbishley, Timothy Connelley, E Wolfson, Keith T. Ballingall, Amy Elizabeth Beckett, David L. Gally, Tom N. McNeilly
Software Mentions: 6
Published: almost 10 years ago

10.3390/plants9121801

The Role of Symbiotic Microorganisms, Nutrient Uptake and Rhizosphere Bacterial Community in Response of Pea (Pisum sativum L.) Genotypes to Elevated Al Concentrations in Soil
Cited by: 10
Author(s): Andrey A. Belimov, А. И. Шапошников, D. S. Syrova, Arina Kichko, Polina Guro, O. S. Yuzikhin, T. S. Azarova, Anna L Sazanova, E. A. Sekste, Vladimir A Litvinskiy, Vladimir V. Nosikov, А. А. Завалин, E. E. Andronov, Vera I. Safronova
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.5669

From the cage to the wild: introductions of Psittaciformes to Puerto Rico
Cited by: 10
Author(s): Wilfredo Falcón, Raymond L. Tremblay
Software Mentions: 6
Published: over 7 years ago

10.3390/ani11030625

RNA-Seq Implies Divergent Regulation Patterns of LincRNA on Spermatogenesis and Testis Growth in Goats
Cited by: 6
Author(s): Dongdong Bo, Xunping Jiang, Guiqiong Liu, Ronggui Hu, Yuqing Chong
Software Mentions: 6
Published: over 5 years ago

10.7150/ijbs.62553

DDX39 as a predictor of clinical prognosis and immune checkpoint therapy efficacy in patients with clear cell renal cell carcinoma
Cited by: 11
Author(s): Yewei Bao, Aimin Jiang, Kai Dong, Xinxin Gan, Wenliang Gong, Zhenjie Wu, Bing Liu, Yi Bao, Jie Wang, Linhui Wang
Software Mentions: 6
Published: over 5 years ago

10.1038/srep33696

Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests
Cited by: 247
Author(s): Kristin Kaiser, Bernd Wemheuer, Vera Korolkow, Franziska Wemheuer, Heiko Nacke, Ingo Schöning, Marion Schrumpf, Rolf Daniel
Software Mentions: 6
Published: almost 10 years ago

10.3390/plants9020197

Tomato Phenotypic Diversity Determined by Combined Approaches of Conventional and High-Throughput Tomato Analyzer Phenotyping
Cited by: 19
Author(s): Amol N. Nankar, Ivanka Tringovska, Stanislava Grozeva, D. Ganeva, D. Kostova
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-79732-x

Assessing coral sperm motility
Cited by: 7
Author(s): Nikolas Zuchowicz, Jonathan Daly, Jessica Bouwmeester, Claire Lager, E. Michael Henley, C. Isabel Nuñez Lendo, Mary Hagedorn
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-44302-3

Dose-dependent effects of chronic alcohol drinking on peripheral immune responses
Cited by: 41
Author(s): Suhas Sureshchandra, Anthony M. Raus, Allen Jankeel, Brian Jin Kee Ligh, Nicole A.R. Walter, Natali Newman, Kathleen A. Grant, Ilhem Messaoudi
Software Mentions: 6
Published: about 7 years ago

10.1186/s12915-021-01147-5

Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model
Cited by: 13
Author(s): Hisayo Ono, Yasuhito Arai, Eisaku Furukawa, Daichi Narushima, Tetsuya Matsuura, Hiromi Nakamura, Daisuke Shiokawa, Masaya Nagai, Toshio Imai, Koshi Mimori, Koji Okamoto, Yoshitaka Hippo, Tatsuhiro Shibata, Mamoru Kato
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12885-021-08083-1

Gene expression and immune infiltration in melanoma patients with different mutation burden
Cited by: 8
Author(s): Liwei Wang, Chuanxi Fu, Rui Li, Lei Shi, Guosheng Zhao, Yan Zhang
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0220953

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Cited by: 67
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Michael Wright, Josip Rudar
Software Mentions: 6
Published: almost 7 years ago

10.3389/fimmu.2020.583644

Fusobacterium nucleatum Extracellular Vesicles Modulate Gut Epithelial Cell Innate Immunity via FomA and TLR2
Cited by: 27
Author(s): Camille Martin-Gallausiaux, Antoine Malabirade, Janine Habier, Paul Wilmes
Software Mentions: 6
Published: over 5 years ago

10.1007/s11060-021-03721-x

LAG-3 expression in the inflammatory microenvironment of glioma
Cited by: 19
Author(s): Maximilian J. Mair, Barbara Kiesel, Katharina Feldmann, Georg Widhalm, Karin Dieckmann, Adelheid Wöhrer, Leonhard Müllauer, Matthias Preusser, Anna S. Berghoff
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-43333-0

The efficiency of a new automated mosquito larval counter and its impact on larval survival
Cited by: 11
Author(s): Wadaka Mamaï, Hamidou Maïga, Miklós Gárdos, Péter Bán, Nanwintoum Séverin Bimbilé Somda, Anna Konczal, Thomas Wallner, Andrew G. Parker, Fabrizio Balestrino, Hanano Yamada, J. Gilles, Jérémy Bouyer
Software Mentions: 6
Published: about 7 years ago

10.1128/mSystems.01006-20

Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis
Cited by: 6
Author(s): A. K. M. Firoj Mahmud, K. Peter R. Nilsson, Anna Fahlgren, Roberto Navais, Rajdeep Choudhury, Kemal Avican, Maria Fällman
Software Mentions: 6
Published: over 5 years ago

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