cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1186/s13059-021-02339-6

Functional mapping of androgen receptor enhancer activity
Cited by: 15
Author(s): Chia Chi Flora Huang, Shreyas Lingadahalli, Tunç Morova, Doğancan Özturan, Eugene Hu, Ivan Pak Lok Yu, Simon Linder, Marlous Hoogstraat, Suzan Stelloo, Funda Sar, Henk van der Poel, Umut Berkay Altıntaş, Mohammadali Saffarzadeh, Stéphane Le Bihan, Brian McConeghy, Bengul Gokbayrak, Felix Y. Feng, Martin Gleave, Andries M. Bergman, Colin C. Collins, Faraz Hach, Wilbert Zwart, Eldon Emberly, Nathan A. Lack
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2020.00435

Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells
Cited by: 10
Author(s): Stephanie S Pavlovich, Tamarand L. Darling, Adam J. Hume, Robert A. Davey, Feng Feng, Elke Mühlberger, Thomas B. Kepler
Software Mentions: 6
Published: over 6 years ago

10.1186/s12920-019-0571-y

Stoichioproteomics reveal oxygen usage bias, key proteins and pathways in glioma
Cited by: 4
Author(s): Yuan Yin, Bo Li, Ke‐Jie Mou, Muhammad Tahir Khan, Aman Chandra Kaushik, Dong‐Qing Wei, Yujuan Zhang
Software Mentions: 6
Published: about 7 years ago

10.1186/s12920-021-01003-z

Repeat to gene expression ratios in leukemic blast cells can stratify risk prediction in acute myeloid leukemia
Cited by: 5
Author(s): Megumi Onishi-Seebacher, Galina Erikson, Zoe Sawitzki, Devon P. Ryan, Gabriele Greve, Michael Lübbert, Thomas Jenuwein
Software Mentions: 6
Published: about 5 years ago

10.1186/s13071-020-04386-7

Low temperature tolerance of three Aedes albopictus strains (Diptera: Culicidae) under constant and fluctuating temperature scenarios
Cited by: 14
Author(s): Lisa Tippelt, Doreen Werner, Helge Kampen
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13059-021-02326-x

AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Cited by: 5
Author(s): Kyle Fletcher, Lin Zhang, Juliana Gil, Rongkui Han, Keri Cavanaugh, Richard W. Michelmore
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2020.00978

Pseudozyma Priming Influences Expression of Genes Involved in Metabolic Pathways and Immunity in Zebrafish Larvae
Cited by: 8
Author(s): Prabhugouda Siriyappagouder, Jorge Galindo-Villegas, Anusha K. S. Dhanasiri, Qirui Zhang, Victoriano Mulero, Viswanath Kiron, Jorge Manuel de Oliveira Fernandes
Software Mentions: 6
Published: over 6 years ago

10.1186/s12920-019-0513-8

Evaluating single-subject study methods for personal transcriptomic interpretations to advance precision medicine
Cited by: 7
Author(s): Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Francesca Vitali, Helen Hao Zhang, Yves A. Lussier
Software Mentions: 6
Published: about 7 years ago

10.1186/s13071-019-3606-5

Comparative analysis of subsampling methods for large mosquito samples
Cited by: 3
Author(s): Linda Jaworski, Stéphanie Jansen, Wolf Peter Pfitzner, Matthias Beck, Norbert Becker, Jonas Schmidt‐Chanasit, Ellen Kiel, Renke Lühken
Software Mentions: 6
Published: about 7 years ago

10.1186/s13071-016-1597-z

Host-feeding patterns of mosquito species in Germany
Cited by: 51
Author(s): Jessica Börstler, Hanna Jöst, R. Garms, Andreas Krüger, Egbert Tannich, Norbert Becker, Jonas Schmidt‐Chanasit, Renke Lühken
Software Mentions: 6
Published: about 10 years ago

10.1242/dmm.049012

Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol
Cited by: 16
Author(s): Karen E. Boschen, Travis Ptacek, Matthew E. Berginski, Jeremy M. Simon, Scott E. Parnell
Software Mentions: 6
Published: about 5 years ago

10.1186/s13071-019-3761-8

Regional biogeography of microbiota composition in the Chagas disease vector Rhodnius pallescens
Cited by: 15
Author(s): Troy J. Kieran, Kaylee M. H. Arnold, Jesse C. Thomas, Christina P. Varian, Azäel Saldaña, José E. Calzada, Nicole L. Gottdenker
Software Mentions: 6
Published: almost 7 years ago

10.3732/apps.1600158

Source Identification of Western Oregon Douglas-Fir Wood Cores Using Mass Spectrometry and Random Forest Classification
Cited by: 31
Author(s): Kristen N. Finch, Edgard O. Espinoza, F. Andrew Jones, Richard Cronn
Software Mentions: 6
Published: over 9 years ago

10.1186/s13059-019-1908-8

Host-associated microbiomes are predicted by immune system complexity and climate
Cited by: 45
Author(s): Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan G. Kueneman, Emmi Kurosawa, Brandon LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Software Mentions: 6
Published: over 6 years ago

10.1186/s13059-020-1947-1

Assembly of hundreds of novel bacterial genomes from the chicken caecum
Cited by: 95
Author(s): Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie Watson, Mick Watson
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2020.01860

Seasonal and Spatial Variations in Bacterial Communities From Tetrodotoxin-Bearing and Non-tetrodotoxin-Bearing Clams
Cited by: 7
Author(s): Laura Biessy, John K. Pearman, Kirsty F. Smith, Ian Hawes, Susanna A. Wood
Software Mentions: 6
Published: about 6 years ago

10.3389/fnhum.2021.623766

Object-Location Memory Training in Older Adults Leads to Greater Deactivation of the Dorsal Default Mode Network
Cited by: 1
Author(s): Ania Mikos, Brigitta Malagurski, Franziskus Liem, Susan Mérillat, Lutz Jäncke
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.668311

Construction of a circRNA-Related Prognostic Risk Score Model for Predicting the Immune Landscape of Lung Adenocarcinoma
Cited by: 0
Author(s): Huawei Li, Jun Wang, Linyou Zhang
Software Mentions: 6
Published: about 5 years ago

10.3390/ijerph18030954

Photosynthesis and Related Physiological Parameters Differences Affected the Isoprene Emission Rate among 10 Typical Tree Species in Subtropical Metropolises
Cited by: 6
Author(s): Junyao Lyu, Feng Xiong, Ning Sun, Yi‐Heng Li, Chunjiang Liu, Shan Yin
Software Mentions: 6
Published: over 5 years ago

10.1007/s00572-021-01042-5

Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit
Cited by: 21
Author(s): Verena Säle, Javier Palenzuela, Concepción Azcón–Aguilar, Iván Sánchez-Castro, Gladstone Alves da Silva, Benjamin Seitz, Ewald Sieverding, Marcel G. A. van der Heijden, Fritz Oehl
Software Mentions: 6
Published: about 5 years ago

10.18632/aging.202718

TMBIM6, a potential virus target protein identified by integrated multiomics data analysis in SARS-CoV-2-infected host cells
Cited by: 4
Author(s): Qizheng Han, Junhao Wang, Haihua Luo, Lei Li, Xinya Lu, Aihua Liu, Yongqiang Deng, Yong Jiang
Software Mentions: 6
Published: over 5 years ago

10.1128/AEM.02421-18

Superior Dispersal Ability Can Lead to Persistent Ecological Dominance throughout Succession
Cited by: 9
Author(s): Primrose J. Boynton, Celeste Peterson, Anne Pringle
Software Mentions: 6
Published: over 7 years ago

10.3390/ijerph17113762

Psychometric Properties of the Condom Use Self-Efficacy Scale among Young Colombians
Cited by: 7
Author(s): Vanessa Sanchez-Mendoza, Encarnación Soriano Ayala, Pablo Vallejo‐Medina
Software Mentions: 6
Published: over 6 years ago

10.3390/ijerph18094966

Core and Whole Body Vibration Exercise Influences Muscle Sensitivity and Posture during a Military Foot March
Cited by: 2
Author(s): Kaitlin D. Lyons, Aaron G Parks, Oluwagbemiga O DadeMatthews, Nilophar L Zandieh, Paige McHenry, Kenneth E. Games, Michael D. Goodlett, William M. Murrah, Jaimie A. Roper, JoEllen M. Sefton
Software Mentions: 6
Published: over 5 years ago

10.1084/jem.20200606

Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Cited by: 31
Author(s): Allyson L. Byrd, Menghan Liu, Kei E. Fujimura, Svetlana Lyalina, Deepti R. Nagarkar, Bruno Charbit, Jacob Bergstedt, Étienne Patin, Oliver J. Harrison, Lluı́s Quintana-Murci, Ira Mellman, Darragh Duffy, Matthew L. Albert
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12879-017-2351-7

1H-NMR analysis of feces: new possibilities in the helminthes infections research
Cited by: 19
Author(s): Sarantos Kostidis, Daria Kokova, Natalia Dementeva, Irina V. Saltykova, Hye Kyong Kim, Young Hae Choi, Oleg A. Mayboroda
Software Mentions: 6
Published: over 9 years ago

10.3389/fgene.2020.565626

A Near-Chromosome Level Genome Assembly of Anopheles stephensi
Cited by: 14
Author(s): Afiya Razia Chida, Samathmika Ravi, Suvratha Jayaprasad, Kiran Paul, Jaysmita Saha, Chinjusha Suresh, Saurabh Whadgar, Naveen Kumar, Raksha Rao K, Chaitali Ghosh, Bibha Choudhary, Suresh Subramani, Subhashini Srinivasan
Software Mentions: 6
Published: almost 6 years ago

10.1084/jem.20192275

NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation
Cited by: 44
Author(s): Carla Castro, Michelle Rosenzwajg, Raphaël Carapito, Mohammad Shahrooei, Martina Konantz, Amjad Khan, Zhichao Miao, Miriam Groß, Thibaud Tranchant, Mirjana Radosavljevic, Nicodème Paul, Tristan Stemmelen, Fabien Pitoiset, Aurélie Hirschler, Benoît Nespola, Anne Molitor, Véronique Rolli, Angélique Pichot, Laura Faletti, Bruno Rinaldi, Sylvie Friant, Mark Mednikov, Hatice Karaüzüm, M. Javad Aman, Christine Carapito, Claudia Lengerke, Vahid Ziaee, Wafaa Eyaid, Stephan Ehl, Fayhan Alroqi, Nima Parvaneh, Seiamak Bahram
Software Mentions: 6
Published: about 6 years ago

10.1186/s13059-017-1374-0

Epigenetic supersimilarity of monozygotic twin pairs
Cited by: 76
Author(s): Timothy E. Van Baak, Cristian Coarfa, Pierre Antoine Dugué, Giovanni Fiorito, Eleonora Laritsky, Maria S. Baker, Noah J. Kessler, Jianrong Dong, Jack D. Duryea, Matt J. Silver, Ayden Saffari, Andrew M. Prentice, Sophie E. Moore, Akram Ghantous, Michael N. Routledge, Yun Gong, Zdenko Herceg, Paolo Víneis, Gianluca Severi, John L. Hopper, Melissa C. Southey, Graham G. Giles, Roger L. Milne, Robert A. Waterland
Software Mentions: 6
Published: over 8 years ago

10.1186/s13046-020-01739-z

LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2021.571231

Identification and Analysis of Potential Key Genes Associated With Hepatocellular Carcinoma Based on Integrated Bioinformatics Methods
Cited by: 21
Author(s): Zhuolin Li, Yao Lin, Bizhen Cheng, Qiaoxin Zhang, Yingmu Cai
Software Mentions: 6
Published: over 5 years ago

10.1186/s12879-016-1361-1

Killer-cell Immunoglobulin-like Receptor (KIR) gene profiles modify HIV disease course, not HIV acquisition in South African women
Cited by: 13
Author(s): Vivek Naranbhai, Debra de Assis Rosa, Lise. Werner, Roshila Moodley, Heather A. Hong, Ayesha B. M. Kharsany, Koleka Mlisana, Sengeziwe Sibeko, Nigel Garrett, Denis Chopera, William H. Carr, Quarraisha Abdool Karim, Adrian V. S. Hill, Salim S. Abdool Karim, Marcus Altfeld, Clive M. Gray, Thumbi Ndung’u
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-018-32229-0

Soil resources and element stocks in drylands to face global issues
Cited by: 98
Author(s): César Plaza, Claudio Zaccone, Kasia Sawicka, Ana Méndez, Ana M. Tarquis, Gabriel Gascó, G.B.M. Heuvelink, Edward A. G. Schuur, Fernando T. Maestre
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmicb.2017.02102

Functionality of Root-Associated Bacteria along a Salt Marsh Primary Succession
Cited by: 17
Author(s): Miao Wang, Erqin Li, Chen Liu, Alexandre Jousset, Joana Falcão Salles
Software Mentions: 6
Published: almost 9 years ago

10.1111/mpp.12819

Population genomics of an outbreak of the potato late blight pathogen,Phytophthora infestans, reveals both clonality and high genotypic diversity
Cited by: 14
Author(s): Sundy Maurice, Melanie Montes, Bent Nielsen, Lars Bødker, Michael D. Martin, Carina Grøntved Jønck, Rasmus Kjøller, Søren Rosendahl
Software Mentions: 6
Published: over 7 years ago

10.3389/fgene.2020.00404

Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization
Cited by: 20
Author(s): Hrant Hovhannisyan, Ester Saus, Ewa Księżopolska, Alex J Hinks Roberts, Edward J. Louis, Toni Gabaldón
Software Mentions: 6
Published: over 6 years ago

10.7150/ijbs.62553

DDX39 as a predictor of clinical prognosis and immune checkpoint therapy efficacy in patients with clear cell renal cell carcinoma
Cited by: 11
Author(s): Yewei Bao, Aimin Jiang, Kai Dong, Xinxin Gan, Wenliang Gong, Zhenjie Wu, Bing Liu, Yi Bao, Jie Wang, Linhui Wang
Software Mentions: 6
Published: over 5 years ago

10.1007/s00436-020-06666-8

Research paper on abiotic factors and their influence on Ixodes ricinus activity—observations over a two-year period at several tick collection sites in Germany
Cited by: 14
Author(s): Jörn Gethmann, Bernd Hoffmann, Elisa Kasbohm, Jochen Süß, Birgit Habedank, Franz Josef Conraths, Martin Beer, Christine Klaus
Software Mentions: 6
Published: over 6 years ago

10.1186/s13059-014-0459-2

Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi
Cited by: 106
Author(s): Xiaofang Jiang, Ashley Peery, Andrew Brantley Hall, Atashi Sharma, Xiaoguang Chen, Robert M. Waterhouse, Aleksey Komissarov, Michelle M. Riehle, Yogesh S. Shouche, Maria V. Sharakhova, Daniel Lawson, Nazzy Pakpour, Peter Arensburger, Victoria L M Davidson, Karin Eiglmeier, Scott J. Emrich, Phillip George, Ryan Kennedy, Shrinivasrao P. Mane, G. Maslen, Chioma Oringanje, Yumin Qi, Robert E. Settlage, Marta Tojo, José M. C. Tubío, Maria Unger, Bo Wang, Kenneth D. Vernick, José M. C. Ribeiro, Anthony A. James, Kristin Michel, Michael A. Riehle, Shirley Luckhart, Igor V. Sharakhov, Zhijian Tu
Software Mentions: 6
Published: almost 12 years ago

10.1038/s41396-020-00829-2

Niche-adaptation in plant-associated Bacteroidetes favours specialisation in organic phosphorus mineralisation
Cited by: 53
Author(s): Ian Lidbury, Chiara Borsetto, Andrew Murphy, Andrew R. Bottrill, Alexandra M. E. Jones, Gary D. Bending, John P. Hammond, Yin Chen, Elizabeth M. H. Wellington, David J. Scanlan
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12864-021-07720-0

Comparative neurotranscriptomics reveal widespread species differences associated with bonding
Cited by: 5
Author(s): Joel A. Tripp, Alejandro Berrío, Lisa A. McGraw, Mikhail V. Matz, Jamie K. Davis, Kiyoshi Inoue, James W. Thomas, Larry J. Young, Steve Phelps
Software Mentions: 6
Published: over 5 years ago

10.1016/j.molmet.2020.101067

Gut microbiota impairs insulin clearance in obese mice
Cited by: 24
Author(s): Kevin P. Foley, Soumaya Zlitni, Brittany M. Duggan, Nicole G. Barra, Fernando F. Anhê, Joseph F. Cavallari, Brandyn D. Henriksbo, Cassandra Y. Chen, Michael Huang, Trevor C. Lau, Roxanne Plante, Michael Schwab, André Marette, Jonathan D. Schertzer
Software Mentions: 6
Published: over 5 years ago

10.1186/s13046-019-1372-z

Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancer
Cited by: 61
Author(s): Apostolos Zaravinos, Constantinos Roufas, Majdi Nagara, Beatriz de Lucas, Maria Oblovatskaya, Christodoulos Efstathiades, Christos Dimopoulos, Georgios D. Ayiomamitis
Software Mentions: 6
Published: about 7 years ago

10.1186/s13059-018-1407-3

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads
Cited by: 90
Author(s): Yohei Sasagawa, Hiroki Danno, Hitomi Takada, Masashi Ebisawa, Kaori Tanaka, Tetsutaro Hayashi, Akira Kurisaki, Itoshi Nikaido
Software Mentions: 6
Published: over 8 years ago

10.1017/S0031182021000111

Dual RNA-Seq transcriptome analysis of chicken macrophage-like cells (HD11) infected in vitro with Eimeria tenella
Cited by: 5
Author(s): Arnar K. S. Sandholt, Feifei Xu, Robert Söderlund, Anna Lundén, Karin Troell, Staffan G. Svärd, Eva Wattrang
Software Mentions: 6
Published: over 5 years ago

10.1007/s10710-018-9328-1

Visualising the global structure of search landscapes: genetic improvement as a case study
Cited by: 12
Author(s): Nadarajen Veerapen, Gabriela Ochoa
Software Mentions: 6
Published: about 8 years ago

10.1002/minf.202000005

Using Machine Learning Methods and Structural Alerts for Prediction of Mitochondrial Toxicity
Cited by: 30
Author(s): Jennifer Hemmerich, Florentina Troger, Barbara Füzi, Gerhard Ecker
Software Mentions: 6
Published: over 6 years ago

10.1038/ismej.2017.165

Recurrent patterns of microdiversity in a temperate coastal marine environment
Cited by: 110
Author(s): Meghan Chafee, Antonio Fernández-Guerra, Pier Luigi Buttigieg, Gunnar Gerdts, A. Murat Eren, Hanno Teeling, Rudolf Amann
Software Mentions: 6
Published: almost 9 years ago

10.1093/aobpla/plaa059

Defoliation severity is positively related to soil solution nitrogen availability and negatively related to soil nitrogen concentrations following a multi-year invasive insect irruption
Cited by: 4
Author(s): Emma Conrad-Rooney, Audrey Barker Plotkin, Valerie J. Pasquarella, Joseph S. Elkinton, Jennifer L. Chandler, Jaclyn Hatala Matthes
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41396-020-00844-3

Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles
Cited by: 45
Author(s): Annelein Meisner, L. Basten Snoek, Joseph Nesme, Elizabeth Dent, Samuel Jacquiod, Aimée T. Classen, Anders Priemé
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.638458

Expression Profile Analysis Identifies a Novel Seven Immune-Related Gene Signature to Improve Prognosis Prediction of Glioblastoma
Cited by: 5
Author(s): Li Hu, Zhibin Han, Xingbo Cheng, Sida Wang, Yumeng Feng, Zhiguo Lin
Software Mentions: 6
Published: over 5 years ago

10.1038/s41396-021-00931-z

Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline
Cited by: 8
Author(s): Grégoire Michoud, David Kamanda Ngugi, Alan Barozzi, Giuseppe Merlino, María Ll. Calleja, António Delgado Huertas, Xosé Anxelu G. Morán, Daniele Daffonchio
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0192834

Thermal physiology of Amazonian lizards (Reptilia: Squamata)
Cited by: 27
Author(s): Luisa Maria Diele‐Viegas, Laurie J. Vitt, Barry Sinervo, Guarino Rinaldi Colli, Fernanda P. Werneck, Donald B. Miles, William E. Magnusson, Juan Carlos Santos, Carla M. Sette, Gabriel Henrique de Oliveira Caetano, Emerson Guedes Pontes, Teresa Cristina Sauer Ávila-Pires
Software Mentions: 6
Published: over 8 years ago

10.1038/s41436-018-0337-5

Translating genotype data of 44,000 biobank participants into clinical pharmacogenetic recommendations: challenges and solutions
Cited by: 65
Author(s): Sulev Reisberg, Kristi Krebs, Maarja Lepamets, Mart Kals, Reedik Mägi, Kristjan Metsalu, Volker M. Lauschke, Jaak Vilo, Lili Milani
Software Mentions: 6
Published: about 7 years ago

10.3389/fgene.2021.612011

TGFβ1: An Indicator for Tumor Immune Microenvironment of Colon Cancer From a Comprehensive Analysis of TCGA
Cited by: 3
Author(s): Jinyan Wang, Jinqiu Wang, Quan Gu, Yan Yang, Yajun Ma, Quan’an Zhang
Software Mentions: 6
Published: over 5 years ago

10.1101/2021.07.06.21259528

Pre-vaccination and early B cell signatures predict antibody response to SARS-CoV-2 mRNA vaccine
Cited by: 2
Author(s): Lela Kardava, Nicholas Rachmaninoff, Lau Ww, Buckner Cm, Krittin Trihemasava, de Assis Fl, W Wang, X Zhang, Y Wang, Cheng Feng Chiang, Sandeep Narpala, Robert Reger, McCormack Ge, Seamon Ca, Childs Rw, A. F. Suffredini, Strich, Chertow Ds, Davey Rt, Sneller Mc, Sarah O’Connell, Li Y, Adrian B. McDermott, Tae‐Wook Chun, Fauci As, Tsang Js, Susan Moir
Software Mentions: 6
Published: about 5 years ago

10.1101/2021.09.08.21263284

Robust immune response to the BNT162b mRNA vaccine in an elderly population vaccinated 15 months after recovery from COVID-19
Cited by: 12
Author(s): Hye Kyung Lee, Ludwig Knabl, Ludwig Knabl, Sebastian Kapferer, Birgit Pateter, Mary Walter, Priscilla A. Furth, Lothar Hennighausen
Software Mentions: 6
Published: almost 5 years ago

10.3390/genes12091300

Mitochondrial Genetic Heterogeneity in Leber’s Hereditary Optic Neuropathy: Original Study with Meta-Analysis
Cited by: 7
Author(s): Rajan Kumar Jha, Chhavi Dawar, Qurratulain Hasan, Akhilesh Pujar, Gaurav Gupta, Venugopalan Y Vishnu, Ramesh Kekunnaya, Kumarasamy Thangaraj
Software Mentions: 6
Published: about 5 years ago

10.1038/s41396-021-00895-0

Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets
Cited by: 22
Author(s): Danièle De Luca, Roberta Piredda, Diana Sarno, Wiebe H. C. F. Kooistra
Software Mentions: 6
Published: over 5 years ago

10.1101/2021.05.27.21257952

Immune transcriptomes from hospitalized patients infected with the SARS-CoV-2 variants B.1.1.7 and B.1.1.7 carrying the E484K escape mutation
Cited by: 3
Author(s): Hye Kyung Lee, Ludwig Knabl, Manuel Wieser, Anna Mur, August Zabernigg, Jana Schumacher, Norbert Kaiser, Priscilla A. Furth, Lothar Hennighausen
Software Mentions: 6
Published: over 5 years ago

10.1186/s13071-019-3459-y

Mosquito (Diptera: Culicidae) larval ecology in natural habitats in the cold temperate Patagonia region of Argentina
Cited by: 13
Author(s): Marta G. Grech, Luz M. Manzo, Luis B. Epele, Magdalena Laurito, Alfredo Ñ. Claverie, Francisco Ludueña-Almeida, María Laura Miserendino, Walter Ricardo Almirón
Software Mentions: 6
Published: over 7 years ago

10.3390/antiox10030351

Physiological and Biochemical Dissection Reveals a Trade-Off between Antioxidant Capacity and Heat Tolerance in Bread Wheat (Triticum aestivum L.)
Cited by: 12
Author(s): Mohammed Mohi-Ud-Din, Md. Nurealam Siddiqui, Motiar Rohman, S. V. Krishna Jagadish, Jalal Uddin Ahmed, Mohamed M. Hassan, Akbar Hossain, Tofazzal Islam
Software Mentions: 6
Published: over 5 years ago

10.3390/genes12040549

Clinical Identification of Dysregulated Circulating microRNAs and Their Implication in Drug Response in Triple Negative Breast Cancer (TNBC) by Target Gene Network and Meta-Analysis
Cited by: 15
Author(s): Amal Qattan, Taher Al‐Tweigeri, Wafa Alkhayal, Kausar Suleman, Asma Tulbah, Suad Bin Amer
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8030368

Optimization of Preservation Methods Allows Deeper Insights into Changes of Raw Milk Microbiota
Cited by: 8
Author(s): Alexandre J.K. Ouamba, Gisèle LaPointe, Simon Dufour, Denis Roy
Software Mentions: 6
Published: over 6 years ago

10.1101/2021.05.11.21256862

Impact of BNT162b first vaccination on the immune transcriptome of elderly patients infected with the B.1.351 SARS-CoV-2 variant
Cited by: 2
Author(s): Ludwig Knabl, Hye Kyung Lee, Manuel Wieser, Anna Mur, August Zabernigg, Simon Rauch, Matthias Böck, Jana Schumacher, Norbert Kaiser, Priscilla A. Furth, Lothar Hennighausen
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.589881

The Toolbox for Fiber Flax Breeding: A Pipeline From Gene Expression to Fiber Quality
Cited by: 8
Author(s): Dmitry Galinousky, Natalia Mokshina, Tsimafei Padvitski, Marina Ageeva, Victor Bogdan, A. V. Kilchevsky, Т. А. Горшкова
Software Mentions: 6
Published: almost 6 years ago

10.1007/s00401-018-1821-3

5-Hydroxymethylcytosine preferentially targets genes upregulated in isocitrate dehydrogenase 1 mutant high-grade glioma
Cited by: 10
Author(s): Wioletta K. Glowacka, Harshika Jain, Makiko Okura, Abulizi Maimaitiming, Yasin Mamatjan, Romina Nejad, Hamza Farooq, Michael D. Taylor, Kenneth Aldape, Paul Kongkham
Software Mentions: 6
Published: over 8 years ago

10.3390/microorganisms9020208

Aquatic Bacterial Diversity, Community Composition and Assembly in the Semi-Arid Inner Mongolia Plateau: Combined Effects of Salinity and Nutrient Levels
Cited by: 29
Author(s): Xiangming Tang, Guobo Xie, Kwang‐Tsao Shao, Wei Tian, Guang Gao, Boqiang Qin
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8111741

Bile Acid Signal Molecules Associate Temporally with Respiratory Inflammation and Microbiome Signatures in Clinically Stable Cystic Fibrosis Patients
Cited by: 11
Author(s): Stephanie Flynn, F. Jerry Reen, José A. Caparrós-Martín, David F. Woods, Jörg Peplies, Sarath Ranganathan, Stephen M. Stick, Fergal O’Gara
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12920-021-00989-w

Identification of key genes in calcific aortic valve disease via weighted gene co-expression network analysis
Cited by: 7
Author(s): Jin-Yu Sun, Hua Yang, Hui Shen, Qiang Qu, Junyan Kan, Xiangqing Kong, Wei Sun, Yue-Yun Shen
Software Mentions: 6
Published: over 5 years ago

10.1101/2020.09.01.20185884

Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community
Cited by: 0
Author(s): Hye Kyung Lee, Ludwig Knabl, Lisa Pipperger, André Volland, Priscilla A. Furth, Keunsoo Kang, Harold E. Smith, Romuald Bellmann, Christina Bernhard, Norbert Kaiser, Hannes Gänzer, Mathias Ströhle, Andreas Walser, Dorothee von Laer, Lothar Hennighausen
Software Mentions: 6
Published: almost 6 years ago

10.3390/genes11101124

Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of qDTYs to Reproductive-Stage Drought Stress in Rice (Oryza sativa L.)
Cited by: 11
Author(s): Jeshurun Asher Tarun, Ramil Mauleon, Juan David Arbelaez, Sheryl Catausan, Shalabh Dixit, Arvind Kumar, Patrick J. Brown, Ajay Kohli, Tobias Kretzschmar
Software Mentions: 6
Published: almost 6 years ago

10.1128/mSystems.00385-21

Diverse Viruses Carrying Genes for Microbial Extremotolerance in the Atacama Desert Hyperarid Soil
Cited by: 22
Author(s): Yunha Hwang, Janina Rahlff, Dirk Schulze‐Makuch, Michael Schloter, Alexander J. Probst
Software Mentions: 6
Published: about 5 years ago

10.1038/s42003-021-02044-x

Cooperative root graft networks benefit mangrove trees under stress
Cited by: 2
Author(s): Alejandra G. Vovides, Marie-Christin Wimmler, Flalk Schrewe, Thorsten Balke, Martin Zwanzig, Cyril Piou, Étienne Delay, Jorge López‐Portillo, Uta Berger
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.606222

Agricultural Landscape Heterogeneity Matter: Responses of Neutral Genetic Diversity and Adaptive Traits in a Neotropical Savanna Tree
Cited by: 5
Author(s): Tatiana Souza do Amaral, Juliana Silveira dos Santos, Fernanda Fraga Rosa, Marcelo Bruno Pessôa, Lázaro José Chaves, Milton Cézar Ribeiro, Rosane Garcia Collevatti
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9051060

Microbial Composition of SCOBY Starter Cultures Used by Commercial Kombucha Brewers in North America
Cited by: 42
Author(s): Keisha Harrison, Chris Curtin
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8020279

Diversity of Bacterial Biosynthetic Genes in Maritime Antarctica
Cited by: 9
Author(s): Adriana Rego, António G G Sousa, João P. Santos, Francisco Pascoal, João Canário, Pedro N. Leão, Catarina Magalhães
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms8091449

Population Dynamics between Erwinia amylovora, Pantoea agglomerans and Bacteriophages: Exploiting Synergy and Competition to Improve Phage Cocktail Efficacy
Cited by: 18
Author(s): Steven Gayder, Michael Parcey, Darlene Nesbitt, Alan J. Castle, A. M. Svircev
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0169339

Comparison of bacterial communities from lava cave microbial mats to overlying surface soils from Lava Beds National Monument, USA
Cited by: 51
Author(s): Kathleen H. Lavoie, Ara S. Winter, Kaitlyn J. H. Read, Evan M. Hughes, M. Spilde, Diana E. Northup
Software Mentions: 6
Published: over 9 years ago

10.3389/fimmu.2018.01634

Robust B Cell Responses Predict Rapid Resolution of Lyme Disease
Cited by: 22
Author(s): Lisa K. Blum, Julia Z. Adamska, Dale S. Martin, Alison W. Rebman, Serra E. Elliott, Richard R.L. Cao, Monica E. Embers, Mark J. Soloski, William H. Robinson
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0174910

Evaluation of a gaze-controlled vision enhancement system for reading in visually impaired people
Cited by: 16
Author(s): Carlos Aguilar, Éric Castet
Software Mentions: 6
Published: over 9 years ago

10.3390/microorganisms9010076

Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics
Cited by: 44
Author(s): Katharina Kesy, Matthias Labrenz, Brittan S. Scales, Bernd Kreikemeyer, Sonja Oberbeckmann
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms7100473

Rapid Bacterial Community Changes during Vermicomposting of Grape Marc Derived from Red Winemaking
Cited by: 18
Author(s): María Gómez-Brandòn, Manuel Aira, Allison R. Kolbe, Nariane de Andrade, Marcos Pérez‐Losada, Jorge Domínguez
Software Mentions: 6
Published: almost 7 years ago

10.1128/mSystems.00540-20

Soil Bacterial Communities Exhibit Strong Biogeographic Patterns at Fine Taxonomic Resolution
Cited by: 29
Author(s): Sean K. Bay, Melodie A. McGeoch, Osnat Gillor, Nimrod Wieler, David J. Palmer, D. James Baker, Steven L. Chown, Chris Greening
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.00613-20

Interplay between Position-Dependent Codon Usage Bias and Hydrogen Bonding at the 5ʹ End of ORFeomes
Cited by: 6
Author(s): Juan C. Villada, Maria F. Duran, Patrick K. H. Lee
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.01006-20

Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis
Cited by: 6
Author(s): A. K. M. Firoj Mahmud, K. Peter R. Nilsson, Anna Fahlgren, Roberto Navais, Rajdeep Choudhury, Kemal Avican, Maria Fällman
Software Mentions: 6
Published: over 5 years ago

10.1080/17453674.2019.1624339

Reduced periprosthetic fracture rate when changing from a tapered polished stem to an anatomical stem for cemented hip arthroplasty: an observational prospective cohort study with a follow-up of 2 years
Cited by: 17
Author(s): Jabbar Mohammed, Sebastian Mukka, Carl-Johan Hedbeck, Ghazi Chammout, Max Gordon, Olof Sköldenberg
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0246663

An open-sourced, web-based application to analyze weekly excess mortality based on the Short-term Mortality Fluctuations data series
Cited by: 38
Author(s): László Németh, Dmitri A. Jdanov, Vladimir M. Shkolnikov
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-44302-3

Dose-dependent effects of chronic alcohol drinking on peripheral immune responses
Cited by: 41
Author(s): Suhas Sureshchandra, Anthony M. Raus, Allen Jankeel, Brian Jin Kee Ligh, Nicole A.R. Walter, Natali Newman, Kathleen A. Grant, Ilhem Messaoudi
Software Mentions: 6
Published: over 7 years ago

10.3390/microorganisms8111754

Comparison of the Performance and Microbial Community Structure of Two Outdoor Pilot-Scale Photobioreactors Treating Digestate
Cited by: 9
Author(s): Aïda Bani, Katia Parati, Anna Pozzi, Cristina Previtali, Graziella Bongioni, Andrea Pizzera, Elena Ficara, Micol Bellucci
Software Mentions: 6
Published: almost 6 years ago

10.3390/genes10050381

Back to the Salt Mines: Genome and Transcriptome Comparisons of the Halophilic Fungus Aspergillus salisburgensis and Its Halotolerant Relative Aspergillus sclerotialis
Cited by: 13
Author(s): Hakim Tafer, Caroline Poyntner, Ksenija Lopandić, Katja Sterflinger, Güadalupe Piñar
Software Mentions: 6
Published: over 7 years ago

10.3390/pathogens9010024

Genome-Wide Analysis of Cyclophilin Proteins in 21 Oomycetes
Cited by: 2
Author(s): Yan Zhang, Kyle Fletcher, Rongkui Han, Richard W. Michelmore, Ruiwu Yang
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-44370-5

Rensch’s rule in avian lice: contradictory allometric trends for sexual size dimorphism
Cited by: 6
Author(s): Imre Sándor Piross, Andrea Harnos, Lajos Rózsa
Software Mentions: 6
Published: over 7 years ago

10.1101/2021.02.23.432450

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Cited by: 4
Author(s): Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Laura K. Donohue, Ian Ferguson, Margaret Guo, Deepti Rao, Weili Miao, David L. Reynolds, Xue Yang, Yang Zhao, Yen-Yu Yang, Yinsheng Wang, Paul A. Khavari
Software Mentions: 6
Published: over 5 years ago

10.1007/s10120-019-01027-6

The clinical value and usage of inflammatory and nutritional markers in survival prediction for gastric cancer patients with neoadjuvant chemotherapy and D2 lymphadenectomy
Cited by: 45
Author(s): Ziyu Li, Shuangxi Li, Xiangji Ying, Lianhai Zhang, Fei Shan, Yongning Jia, Jiafu Ji
Software Mentions: 6
Published: over 6 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms9010002

Genomic Analysis of Antimicrobial Resistance Genotype-to-Phenotype Agreement in Helicobacter pylori
Cited by: 15
Author(s): Tal Domanovich-Asor, Yair Motro, Boris Khalfin, Hillary A. Craddock, Avi Peretz, Jacob Moran-Gilad
Software Mentions: 6
Published: over 5 years ago

10.1111/acel.13381

Inhibition of the neuromuscular acetylcholine receptor with atracurium activates FOXO/DAF‐16‐induced longevity
Cited by: 7
Author(s): Rebecca L. McIntyre, Simone Denis, Rashmi Kamble, Marte Molenaars, Michael Petr, Bauke V. Schomakers, Mizanur Rahman, Siddhartha Datta Gupta, Márton L. Tóth, Siva A. Vanapalli, Aldo Jongejan, Morten Scheibye‐Knudsen, Riekelt H. Houtkooper, Georges E. Janssens
Software Mentions: 6
Published: about 5 years ago

10.1038/s41398-021-01531-3

Gut microbial biomarkers for the treatment response in first-episode, drug-naïve schizophrenia: a 24-week follow-up study
Cited by: 22
Author(s): Xiuxia Yuan, Yunpeng Wang, Xue Li, Jiajun Jiang, Yulin Kang, Lijuan Pang, Peifen Zhang, Ang Li, Luxian Lv, Ole A. Andreassen, Xiaoduo Fan, Shaohua Hu, Xueqin Song
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0256929

Modelling the effects of the repellent scent marks of pollinators on their foraging efficiency and the plant-pollinator community
Cited by: 0
Author(s): Elise Verrier, Emmanuelle Baudry, Carmen Bessa‐Gomes
Software Mentions: 6
Published: almost 5 years ago

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