An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-021-02339-6

https://doi.org/10.1186/s13059-021-02339-6

Functional mapping of androgen receptor enhancer activity

Cited by: 15
Author(s): Chia Chi Flora Huang, Shreyas Lingadahalli, Tunç Morova, Doğancan Özturan, Eugene Hu, Ivan Pak Lok Yu, Simon Linder, Marlous Hoogstraat, Suzan Stelloo, Funda Sar, Henk van der Poel, Umut Berkay Altıntaş, Mohammadali Saffarzadeh, Stéphane Le Bihan, Brian McConeghy, Bengul Gokbayrak, Felix Y. Feng, Martin Gleave, Andries M. Bergman, Colin C. Collins, Faraz Hach, Wilbert Zwart, Eldon Emberly, Nathan A. Lack
Published: about 4 years ago

Software Mentions 6

bioconductor: chromVAR
Chromatin Variation Across Regions
Papers that mentioned: 46
Very Likely Science (65)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: ROSE
Random Over-Sampling Examples
Papers that mentioned: 131
Very Likely Science (75)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)