cran: ggplot2 | Projects | Ecosyste.ms: Papers

10.1371/journal.pbio.3001158

Disparate temperature-dependent virus–host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium
Cited by: 66
Author(s): Philip V’kovski, Mitra Gultom, Jenna N. Kelly, Silvio Steiner, Julie Russeil, Bastien Mangeat, Elisa Cora, Joern Pezoldt, Melle Holwerda, Annika Kratzel, Laura Laloli, Manon Wider, Jasmine Portmann, Thao Thi Phuong Tran, Nadine Ebert, Hanspeter Stalder, Rune Hartmann, Vincent Gardeux, Daniel Alpern, Bart Deplancke, Volker Thiel, Ronald Dijkman
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pbio.3000202

PlotsOfData—A web app for visualizing data together with their summaries
Cited by: 394
Author(s): Marten Postma, Joachim Goedhart
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pone.0247790

Parasitism and host behavior in the context of a changing environment: The Holocene record of the commercially important bivalve Chamelea gallina, northern Italy
Cited by: 3
Author(s): John Warren Huntley, Daniele Scarponi
Software Mentions: 9
Published: over 5 years ago

10.3389/fmicb.2021.654135

Gullies and Moraines Are Islands of Biodiversity in an Arid, Mountain Landscape, Asgard Range, Antarctica
Cited by: 3
Author(s): Adam J. Solon, Claire F. Mastrangelo, Lara Vimercati, Pacifica Sommers, John L. Darcy, Eli M. S. Gendron, Dorota L. Porazinska, Steven K. Schmidt
Software Mentions: 9
Published: over 5 years ago

10.1155/2021/7408893

Identification of a Four-lncRNA Prognostic Signature for Colon Cancer Based on Genome Instability
Cited by: 2
Author(s): Duo Yun, Zhimin Yang
Software Mentions: 9
Published: about 5 years ago

10.3390/metabo10030086

Local Phenomena Shape Backyard Soil Metabolite Composition
Cited by: 9
Author(s): Tra D Nguyen, Mahbobeh Lesani, Ines Forrest, Yunpeng Lan, Danya A. Dean, Quentin M. R. Gibaut, Yanting Guo, Ekram Hossain, Marcela Olvera, Hannah Panlilio, Adwaita R. Parab, Chao‐Yi Wu, Jean A. Bernatchez, Robert H. Cichewicz, Laura-Isobel McCall
Software Mentions: 9
Published: over 6 years ago

10.7554/eLife.60188

Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells
Cited by: 42
Author(s): Kristen L. Wells, Corey N. Miller, Andreas R. Gschwind, Wei Wu, Jonah D Phipps, Mark S. Anderson, Lars M. Steinmetz
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0078009

Frequency Response and Gap Tuning for Nonlinear Electrical Oscillator Networks
Cited by: 0
Author(s): Harish S. Bhat, Garnet J. Vaz
Software Mentions: 9
Published: almost 13 years ago

10.3389/fonc.2020.578809

Identification and Verification on Prognostic Index of Lower-Grade Glioma Immune-Related LncRNAs
Cited by: 7
Author(s): Jing Wen, Youjun Wang, Lili Luo, Peng Lu, Caixia Chen, Jian Guo, Yunlong Ge, Wenjun Li, Xin Jin
Software Mentions: 9
Published: almost 6 years ago

10.3389/fmicb.2021.616956

Assembly Processes and Co-occurrence Patterns of Abundant and Rare Bacterial Community in the Eastern Indian Ocean
Cited by: 9
Author(s): Liuyang Li, Laxman Pujari, Chao Wu, Dongyang Huang, Yuqiu Wei, Congcong Guo, Guicheng Zhang, Wenzhe Xu, Haijiao Liu, Xingzhou Wang, Min Wang, Jun Sun
Software Mentions: 9
Published: about 5 years ago

10.1002/ece3.6190

Friend or foe? A parasitic wasp shifts the cost/benefit ratio in a nursery pollination system impacting plant fitness
Cited by: 2
Author(s): Carmen Villacañas de Castro, Thomas S. Hoffmeister
Software Mentions: 9
Published: over 6 years ago

10.1128/AEM.00121-20

Assessment of Soil Features on the Growth of Environmental Nontuberculous Mycobacterial Isolates from Hawai'i
Cited by: 15
Author(s): Cody Glickman, Ravleen Virdi, Nabeeh A. Hasan, L. Elaine Epperson, Leeza Brown, Stephanie N. Dawrs, James Crooks, Edward D. Chan, Michael Strong, Stephen T. Nelson, Jennifer R. Honda
Software Mentions: 9
Published: about 6 years ago

10.1155/2020/4252580

A Novel RNA-Seq-Based Model for Preoperative Prediction of Lymph Node Metastasis in Oral Squamous Cell Carcinoma
Cited by: 7
Author(s): Bo Qiao, Min Zhao, Jing Wu, Huan Wu, Yiming Zhao, Fanhao Meng, Yu Tian, Situo Wang, Jianxin Shi, Haizhong Zhang
Software Mentions: 9
Published: about 6 years ago

10.1098/rspb.2018.0270

Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: over 8 years ago

10.1371/journal.pone.0193164

Mosquito pornoscopy: Observation and interruption of Aedes aegypti copulation to determine female polyandric event and mixed progeny
Cited by: 10
Author(s): Danilo O. Carvalho, Samira Chuffi, Rafaella Sayuri Ioshino, I. C. S. Marques, Regina Fini, Maria Karina Costa, Helena Rocha Corrêa de Araújo, André Luis Costa-da-Silva, Bianca Burini Kojin, Margareth Lara Capurro
Software Mentions: 9
Published: over 8 years ago

10.1186/s12936-020-3133-z

Influence of house characteristics on mosquito distribution and malaria transmission in the city of Yaoundé, Cameroon
Cited by: 10
Author(s): Carmène Sandra Ngadjeu, Patricia Doumbe-Belisse, Abdou Talipouo, Landre Djamouko-Djonkam, Parfait Awono-Ambene, Sévilor Kekeunou, Wilson Toussile, Charles S. Wondji, Christophe Antonio-Nkondjio
Software Mentions: 9
Published: over 6 years ago

10.1038/s42003-021-01948-y

High biodiversity in a benzene-degrading nitrate-reducing culture is sustained by a few primary consumers
Cited by: 9
Author(s): Chrats Melkonian, Lucas Fillinger, Siavash Atashgahi, Ulisses Nunes da Rocha, Eric Kuiper, Brett G. Olivier, Martin Braster, Willi Gottstein, Rick Helmus, John R. Parsons, Hauke Smidt, Marcelle van der Waals, Jan Gerritse, Bernd W. Brandt, Wilfred F. M. Röling, Douwe Molenaar, Rob J.M. van Spanning
Software Mentions: 9
Published: over 5 years ago

10.3389/fgene.2021.623424

Correlations Between Tumor Mutation Burden and Immunocyte Infiltration and Their Prognostic Value in Colon Cancer
Cited by: 17
Author(s): Zhangjian Zhou, Xin Xie, Xuan Wang, Xin Zhang, Wenxin Li, Tuanhe Sun, Yifan Cai, Jianhua Wu, Chengxue Dang, Hao Zhang
Software Mentions: 9
Published: over 5 years ago

10.1073/pnas.2104254118

Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution
Cited by: 22
Author(s): Nicolas Blavet, Hua Yang, Handong Su, Pavel Solanský, Ryan N. Douglas, Miroslava Karafiátová, Lucie Šimková, Jing Zhang, Yalin Liu, Jie Hou, Xiaowen Shi, Chen Chen, Mohamed El-Walid, Morgan McCaw, Patrice S. Albert, Zhi Gao, Changzeng Zhao, Gil Ben-Zvi, Lior Glick, Guy Kol, Jinghua Shi, Jan Vrána, Hana Šimková, Jonathan C. Lamb, Kathleen J. Newton, R. Kelly Dawe, Jaroslav Doležel, Tieming Ji, Kobi Baruch, Fangpu Han, James A. Birchler, Jan Bartoš
Software Mentions: 9
Published: over 5 years ago

10.7717/peerj.9017

Population structure and microbial community diversity of two common tetillid sponges in a tropical reef lagoon
Cited by: 10
Author(s): Jake Ivan P. Baquiran, Michael Angelou L. Nada, Niño Posadas, Dana P. Manogan, Patrick C. Cabaitan, Cecilia Conaco
Software Mentions: 9
Published: over 6 years ago

10.1080/19490976.2021.1957408

Imbalance of the intestinal virome and altered viral-bacterial interactions caused by a conditional deletion of the vitamin D receptor
Cited by: 14
Author(s): Jilei Zhang, Yongguo Zhang, Yinglin Xia, Jun Sun
Software Mentions: 9
Published: almost 6 years ago

10.7717/peerj.10008

A model of twenty-three metabolic-related genes predicting overall survival for lung adenocarcinoma
Cited by: 3
Author(s): Zhenyu Zhao, Boxue He, Qidong Cai, Pengfei Zhang, Ping Xiong, Yuqian Zhang, Hui Xie, Xiang Wang
Software Mentions: 9
Published: about 6 years ago

10.3389/fmicb.2018.01323

Exposure to Arsenic Alters the Microbiome of Larval Zebrafish
Cited by: 37
Author(s): Dylan Dahan, Brooke A. Jude, Regina Lamendella, Felicia Keesing, Gabriel G. Perron
Software Mentions: 9
Published: over 8 years ago

10.3758/s13414-018-1538-3

Bottom-up attention capture with distractor and target singletons defined in the same (color) dimension is not a matter of feature uncertainty
Cited by: 11
Author(s): Hanna Weichselbaum, Ulrich Ansorge
Software Mentions: 9
Published: over 8 years ago

10.1093/gigascience/giy083

Clustering trees: a visualization for evaluating clusterings at multiple resolutions
Cited by: 353
Author(s): Luke Zappia, Alicia Oshlack
Software Mentions: 9
Published: over 8 years ago

10.1371/journal.pone.0220770

Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application
Cited by: 40
Author(s): Edward Lopatto, Jinlyung Choi, Alfredo Colina, Lanying Ma, Adina Howe, Shannon M. Hinsa-Leasure
Software Mentions: 9
Published: about 7 years ago

10.3390/metabo11040211

gcProfileMakeR: An R Package for Automatic Classification of Constitutive and Non-Constitutive Metabolites
Cited by: 3
Author(s): Fernando Pérez-Sánz, Victoria Ruiz-Hernández, Marta I. Terry, Sara Arce-Gallego, Julia Weiß, Pedro J. Navarro, Marcos Egea‐Cortines
Software Mentions: 9
Published: over 5 years ago

10.7554/eLife.49452

Adaptive thermal plasticity enhances sperm and egg performance in a model insect
Cited by: 23
Author(s): Ramakrishnan Vasudeva, Andreas Sutter, Kris Sales, Matthew E. Dickinson, Alyson J. Lumley, Matthew J. G. Gage
Software Mentions: 9
Published: about 7 years ago

10.3389/fimmu.2019.00413

Transcriptional Profiles of California Sea Lion Peripheral NK and CD+8 T Cells Reflect Ecological Regionalization and Infection by Oncogenic Viruses
Cited by: 4
Author(s): Ignacio Peñín, Mónica Eugenia Figueroa-Cabañas, Fabiola Guerrero-de la Rosa, Luis A. Soto-García, Roberto Álvarez-Martínez, Adriana Flores-Morán, Karina Acevedo‐Whitehouse
Software Mentions: 9
Published: over 7 years ago

10.7717/peerj.7155

Nature representation in South American protected areas: country contrasts and conservation priorities
Cited by: 16
Author(s): Germán Baldi, Santiago A. Schauman, Marcos Texeira, Sofía Marinaro, Osvaldo A. Martin, Patricia Gandini, Estéban G. Jobbágy
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pone.0177276

Succinct workflows for circulating tumor cells after enrichment: From systematic counting to mutational profiling
Cited by: 11
Author(s): Vernon G. Wong, Josephine Mun Yee Ko, Chi-Tat Lam, Maria Li Lung
Software Mentions: 9
Published: over 9 years ago

10.1371/journal.pone.0095224

Two-Stage, In Silico Deconvolution of the Lymphocyte Compartment of the Peripheral Whole Blood Transcriptome in the Context of Acute Kidney Allograft Rejection
Cited by: 18
Author(s): Casey P. Shannon, Robert Balshaw, Raymond T. Ng, J. Wilson-McManus, Paul Keown, Robert McMaster, Bruce M. McManus, David Landsberg, Nicole M. Isbel, Greg Knoll, Scott J. Tebbutt
Software Mentions: 9
Published: over 12 years ago

10.1186/s13073-021-00902-1

Integrative statistical analyses of multiple liquid biopsy analytes in metastatic breast cancer
Cited by: 16
Author(s): Corinna Keup, Vinay Suryaprakash, Siegfried Hauch, Markus Storbeck, Peter F. Hahn, Markus Sprenger-Haussels, Hans‐Christian Kolberg, Mitra Tewes, Oliver Hoffmann, Rainer Kimmig, Sabine Kasimir‐Bauer
Software Mentions: 9
Published: over 5 years ago

10.7717/peerj.6746

Deterministic processes dominate soil microbial community assembly in subalpine coniferous forests on the Loess Plateau
Cited by: 19
Author(s): Pengyu Zhao, Jiabing Bao, Xue Wang, Yi Liu, Cui Li, Bo Chai
Software Mentions: 9
Published: over 7 years ago

10.7554/eLife.65905

Convergent organization of aberrant MYB complex controls oncogenic gene expression in acute myeloid leukemia
Cited by: 28
Author(s): Sumiko Takao, Lauren Forbes, Masahiro Uni, Shu‐Yuan Cheng, Jose Mario Bello Pineda, Yusuke Tarumoto, Paolo Cifani, Gerard Minuesa, Celine Chen, Michael G. Kharas, Robert K. Bradley, Christopher R. Vakoc, Richard P. Koche, Alex Kentsis
Software Mentions: 9
Published: over 5 years ago

10.1155/2021/8864436

Identification and Validation of a Tumor Microenvironment-Related Gene Signature for Prognostic Prediction in Advanced-Stage Non-Small-Cell Lung Cancer
Cited by: 10
Author(s): Xuening Zhang, Xiaoguang Shi, Hao Zhao, Xiaocan Jia, Yongli Yang
Software Mentions: 9
Published: over 5 years ago

10.12688/f1000research.27062.2

SAPHIR: a Shiny application to analyze tissue section images
Cited by: 0
Author(s): Elodie Germani, Hugues Lelouard, Mathieu Fallet
Software Mentions: 9
Published: over 5 years ago

10.3389/fvets.2020.603990

Modeling Thermal Suitability for Reindeer (Rangifer tarandus ssp.) Brainworm (Elaphostrongylus rangiferi) Transmission in Fennoscandia
Cited by: 2
Author(s): Hannah Rose Vineer, Torill Mørk, Diana Williams, Rebecca K. Davidson
Software Mentions: 9
Published: almost 6 years ago

10.7717/peerj.5217

Avian community characteristics and demographics reveal how conservation value of regenerating tropical dry forest changes with forest age
Cited by: 8
Author(s): Steven C. Latta, Nathan L. Brouwer, Danilo Mejía, María M. Paulino
Software Mentions: 9
Published: over 8 years ago

10.1186/s12859-021-04020-y

MeltingPlot, a user-friendly online tool for epidemiological investigation using High Resolution Melting data
Cited by: 4
Author(s): Matteo Perini, Gherard Batisti Biffignandi, Domenico Di Carlo, Ajay Ratan Pasala, Aurora Piazza, Simona Panelli, Gian Vincenzo Zuccotti, Francesco Comandatore
Software Mentions: 9
Published: over 5 years ago

10.3897/mycokeys.81.66249

Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa
Cited by: 6
Author(s): Peter Meidl, Brendan Furneaux, Kassim I. Tchan, Kerri L. Kluting, Martin Ryberg, Marie-Laure Guissou, Bakary Soro, Aïssata Traoré, Gbamon Konomou, Nourou S. Yorou, Anna Rosling
Software Mentions: 9
Published: over 5 years ago

10.1038/s41396-019-0546-1

Spatial and temporal axes impact ecology of the gut microbiome in juvenile European lobster (Homarus gammarus)
Cited by: 29
Author(s): Corey C. Holt, Mark van der Giezen, Carly L. Daniels, Grant D. Stentiford, David Bass
Software Mentions: 9
Published: almost 7 years ago

10.15698/mic2021.08.757

Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
Cited by: 13
Author(s): Maria Paula Rueda‐Mejia, Lukas Nägeli, Stefanie Lutz, Richard D. Hayes, Adithi R. Varadarajan, Igor V. Grigoriev, Christian H. Ahrens, Florian M. Freimoser
Software Mentions: 9
Published: about 5 years ago

10.1038/s41396-019-0416-x

Variability in snake skin microbial assemblages across spatial scales and disease states
Cited by: 19
Author(s): Donald M. Walker, Jacob E. Leys, Matthew Grisnik, Alejandro Grajal-Puche, Christopher M. Murray, Matthew C. Allender
Software Mentions: 9
Published: over 7 years ago

10.3389/fgene.2020.00785

Systematic Evaluation of the Diagnostic and Prognostic Significance of Competitive Endogenous RNA Networks in Prostate Cancer
Cited by: 3
Author(s): Zihu Guo, Han Liang, Yingxue Fu, Ziyin Wu, Yaohua Ma, Yueping Liu, Haiqing Wang, Li Jiang, Shengnan Liang, Zhenzhong Wang, Furong Li, Wei Xiao, Jingbo Wang, Yonghua Wang
Software Mentions: 9
Published: about 6 years ago

10.1186/s12918-016-0349-1

DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Cited by: 156
Author(s): Andrew McKenzie, Igor Katsyv, Won Min Song, Minghui Wang, Bin Zhang
Software Mentions: 9
Published: almost 10 years ago

10.1155/2019/5076467

Prediction of the Outcome for Patients with Glioblastoma with lncRNA Expression Profiles
Cited by: 4
Author(s): Qinglin Liu, Changjing Qi, Gang Li, Wandong Su
Software Mentions: 9
Published: almost 7 years ago

10.3389/fgene.2019.00828

The Construction and Comprehensive Analysis of ceRNA Networks and Tumor-Infiltrating Immune Cells in Bone Metastatic Melanoma
Cited by: 19
Author(s): Runzhi Huang, Zhiwei Zeng, Guangyu Li, Dianwen Song, Penghui Yan, Huabin Yin, Peng Hu, Xiaolong Zhu, Ruizhi Chang, Xu Zhang, Jie Zhang, Tong Meng, Zongqiang Huang
Software Mentions: 9
Published: about 7 years ago

10.1042/BSR20202898

Comprehensive analysis reveals a prognostic and therapeutic biomarker CD3D in the breast carcinoma microenvironment
Cited by: 13
Author(s): Zhipeng Zhu, Weipeng Ye, Xiaofang Wu, Sihao Lin, Jiuhua Xu, Lulu Li, Jiayi Li, Haibin Wang, Zhengjie Huang
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0192157

Tissue analyses reveal a potential immune-adjuvant function of FAP-1 positive fibroblasts in non-small cell lung cancer
Cited by: 30
Author(s): Thomas K. Kilvaer, Mehrdad Rakaee, Turid Hellevik, Arne Östman, Carina Strell, Roy M. Bremnes, Lill-Tove Busund, Tom Dønnem, Iñigo Martínez-Zubiaurre
Software Mentions: 9
Published: over 8 years ago

10.3389/fmolb.2021.686110

Investigating the Role of Root Exudates in Recruiting Streptomyces Bacteria to the Arabidopsis thaliana Microbiome
Cited by: 14
Author(s): Sarah F. Worsley, Michael C. Macey, Samuel M. M. Prudence, Barrie Wilkinson, J. Colin Murrell, Matthew I. Hutchings
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-021-81051-8

Summer weather conditions influence winter survival of honey bees (Apis mellifera) in the northeastern United States
Cited by: 37
Author(s): Martina Calovi, Christina M. Grozinger, Douglas A. Miller, Sarah C. Goslee
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0188564

Widespread local chronic stressors in Caribbean coastal habitats
Cited by: 10
Author(s): Iliana Chollett, Rachel Collin, Carolina Bastidas, Aldo Cróquer, Peter M. H. Gayle, Eric Jordán-Dahlgren, Karen Koltes, Hazel A. Oxenford, Alberto Rodríguez-Ramírez, Ernesto Weil, Jahson Berhane Alemu, David Bone, Kenneth C. Buchan, Marcia Creary Ford, Edgar Escalante‐Mancera, Jaime Garzón-Ferreira, Héctor M. Guzmán, Björn Kjerfve, Eduardo Klein, Croy McCoy, Arthur C. Potts, Francisco Ruiz-Rentería, Struan R. Smith, John Tschirky, Jorge Cortés
Software Mentions: 9
Published: almost 9 years ago

10.3389/fpsyg.2020.01044

Association Between Preschoolers’ Specific Fine (But Not Gross) Motor Skills and Later Academic Competencies: Educational Implications
Cited by: 24
Author(s): Elena Escolano Pérez, Maria Luisa Herrero-Nivela, José Luís Losada
Software Mentions: 9
Published: over 6 years ago

10.1128/mSystems.00493-20

Exometabolite Dynamics over Stationary Phase Reveal Strain-Specific Responses
Cited by: 3
Author(s): John L. Chodkowski, Ashley Shade
Software Mentions: 9
Published: almost 6 years ago

10.1007/s10270-019-00721-4

Modeling compliance specifications in linear temporal logic, event processing language and property specification patterns: a controlled experiment on understandability
Cited by: 2
Author(s): Christoph Czepa, Amirali Amiri, Evangelos Ntentos, Uwe Zdun
Software Mentions: 9
Published: over 7 years ago

10.3389/fgene.2020.00192

Integrated Analysis Identifies a Nine-microRNA Signature Biomarker for Diagnosis and Prognosis in Colorectal Cancer
Cited by: 31
Author(s): Ziyang Di, Maojun Di, Weihua Fu, Qiang Tang, Yanwei Liu, Peijie Lei, Xinsheng Gu, Tong Liu, Min Sun
Software Mentions: 9
Published: over 6 years ago

10.3389/fgene.2021.691465

ARG2, MAP4K5 and TSTA3 as Diagnostic Markers of Steroid-Induced Osteonecrosis of the Femoral Head and Their Correlation With Immune Infiltration
Cited by: 10
Author(s): Rongguo Yu, Jiayu Zhang, Youguang Zhuo, Hong Xu, Jie Ye, Susu Tang, Nannan Liu, Yiyuan Zhang
Software Mentions: 9
Published: about 5 years ago

10.3390/s19122772

Extracting Value from Industrial Alarms and Events: A Data-Driven Approach Based on Exploratory Data Analysis
Cited by: 16
Author(s): Aguinaldo Bezerra, Ivanovitch Silva, Luiz Affonso Guedes, Diego R. C. Silva, Gustavo Bezerra Paz Leitão, Kaku Saito
Software Mentions: 9
Published: over 7 years ago

10.1186/s12859-017-1936-x

Software for rapid time dependent ChIP-sequencing analysis (TDCA)
Cited by: 1
Author(s): Mike Myschyshyn, Marco Farren-Dai, Tien-Jui Chuang, David J. Vocadlo
Software Mentions: 9
Published: almost 9 years ago

10.1371/journal.pone.0254356

Endpoint PCR coupled with capillary electrophoresis (celPCR) provides sensitive and quantitative measures of environmental DNA in singleplex and multiplex reactions
Cited by: 7
Author(s): Bettina Thalinger, Yannick Pütz, Michael Traugott
Software Mentions: 9
Published: over 5 years ago

10.3389/fnins.2020.00061

Regionally Distinct Astrocytes Display Unique Transcription Factor Profiles in the Adult Brain
Cited by: 35
Author(s): Brittney Lozzi, Teng-Wei Huang, Debosmita Sardar, Anna Yu-Szu Huang, Benjamin Deneen
Software Mentions: 9
Published: over 6 years ago

10.1111/1755-0998.13030

DeviaTE: Assembly‐free analysis and visualization of mobile genetic element composition
Cited by: 26
Author(s): Lukas Weilguny, Robert Kofler
Software Mentions: 9
Published: over 7 years ago

10.1186/s41065-021-00196-8

Dynamic co-expression modular network analysis in nonalcoholic fatty liver disease
Cited by: 4
Author(s): Jing Zheng, WU Hui-zhong, Zhiying Zhang, Songqiang Yao
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-021-96362-z

High efficacy of microbial larvicides for malaria vectors control in the city of Yaounde Cameroon following a cluster randomized trial
Cited by: 8
Author(s): Christophe Antonio-Nkondjio, Patricia Doumbe-Belisse, Landre Djamouko-Djonkam, Carmène Sandra Ngadjeu, Abdou Talipouo, Edmond Kopya, Roland Bamou, Marie Paul Audrey Mayi, Nadège Sonhafouo-Chiana, Diane Leslie Nkahe, Raymond Tabue, Dorothy A. Fosah, Jude D. Bigoga, Parfait Awono-Ambene, Charles S. Wondji
Software Mentions: 9
Published: about 5 years ago

10.1093/femsec/fiab097

Host species shape the community structure of culturable endophytes in fruits of wild berry species (Vaccinium myrtillus L., Empetrum nigrum L. and Vaccinium vitis-idaea L.)
Cited by: 9
Author(s): Minh-Phuong Nguyen, Kaisa Lehosmaa, Françoise Martz, Janne J. Koskimäki, Anna Maria Pirttilä, Hely Häggman
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-020-76315-8

Robustly forecasting maize yields in Tanzania based on climatic predictors
Cited by: 18
Author(s): Rahel Laudien, Bernhard Schauberger, David Makowski, Christoph Gornott
Software Mentions: 9
Published: almost 6 years ago

10.3389/fgene.2020.00441

Prognostic Value of a Stemness Index-Associated Signature in Primary Lower-Grade Glioma
Cited by: 28
Author(s): Mingwei Zhang, Xuezhen Wang, Xiaoping Chen, Feibao Guo, Jinsheng Hong
Software Mentions: 9
Published: over 6 years ago

10.1371/journal.ppat.1009068

Modeling intra-mosquito dynamics of Zika virus and its dose-dependence confirms the low epidemic potential of Aedes albopictus
Cited by: 16
Author(s): Sébastian Lequime, Jean-Sébastien Dehecq, Séverine Matheus, Franck de Laval, Lionel Alméras, Sébastien Briolant, Albin Fontaine
Software Mentions: 9
Published: almost 6 years ago

10.3389/fgene.2021.661988

Identification of Aging-Related Genes Associated With Clinical and Prognostic Features of Hepatocellular Carcinoma
Cited by: 12
Author(s): Xingte Chen, Lei Wang, Liang Hong, Zhiying Su, Xiaohong Zhong, Han Zhou, Xueqing Zhang, Junxin Wang, Lingdong Shao
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0249102

The rodent object-in-context task: A systematic review and meta-analysis of important variables
Cited by: 5
Author(s): Milou S. C. Sep, Marijn Vellinga, R. Angela Sarabdjitsingh, Marian Joëls
Software Mentions: 9
Published: over 5 years ago

10.1002/ece3.6335

High dispersal capacity and biogeographic breaks shape the genetic diversity of a globally distributed reef‐dwelling calcifier
Cited by: 16
Author(s): Martina Prazeres, Raphaël Morard, Thomas E. Roberts, Steve S. Doo, Jamaluddin Jompa, Christiane Schmidt, Marleen Stuhr, Willem Renema, Michal Kučera
Software Mentions: 9
Published: over 6 years ago

10.1002/aps3.11344

A basic dd <scp>RAD</scp> seq two‐enzyme protocol performs well with herbarium and silica‐dried tissues across four genera
Cited by: 20
Author(s): Ingrid E. Jordon‐Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels
Software Mentions: 9
Published: over 6 years ago

10.2196/27163

Variation of Daily Care Demand in Swiss General Hospitals: Longitudinal Study on Capacity Utilization, Patient Turnover and Clinical Complexity Levels
Cited by: 5
Author(s): Narayan Sharma, René Schwendimann, Olga Endrich, Dietmar Ausserhofer, Michaël Simon
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-020-76792-x

Energy depletion and opportunistic microbial colonisation in white syndrome lesions from corals across the Indo-Pacific
Cited by: 3
Author(s): Hillary A. Smith, Jessica A. Conlan, F. Joseph Pollock, Naohiro Wada, Amanda Shore, Julia Yun-Hsuan Hung, Greta S. Aeby, Bette L. Willis, David S. Francis, David G. Bourne
Software Mentions: 9
Published: almost 6 years ago

10.1002/ece3.7437

Mixing tree species associated with arbuscular or ectotrophic mycorrhizae reveals dual mycorrhization and interactive effects on the fungal partners
Cited by: 14
Author(s): Heike Heklau, Nicole Schindler, François Buscot, Nico Eisenhauer, Olga Ferlian, Luis Daniel Prada-Salcedo, Helge Bruelheide
Software Mentions: 9
Published: over 5 years ago

10.1155/2021/6657397

Identifying Stage II Colorectal Cancer Recurrence Associated Genes by Microarray Meta-Analysis and Building Predictive Models with Machine Learning Algorithms
Cited by: 2
Author(s): Wei Lu, Xiang Pan, Siqi Dai, Dongliang Fu, Maxwell Hwang, Yaowu Zhu, Lina Zhang, Jingsun Wei, Xianglong Kong, Jun Li, Qian Xiao, Kefeng Ding
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-019-50565-7

Tradeoffs in hyphal traits determine mycelium architecture in saprobic fungi
Cited by: 14
Author(s): Anika Lehmann, Weiguo Zheng, Katharina Soutschek, Julien Roy, Andrey Yurkov, Matthias C. Rillig
Software Mentions: 9
Published: about 7 years ago

10.1177/1179546820951793

Carotid Plaque Morphology is Similar in Patients with Reduced and Normal Renal Function
Cited by: 1
Author(s): Caroline Heijl, Fredrik Kahn, Andreas Edsfeldt, Christoffer Tengryd, Jan Nilsson, Isabel Gonçalves
Software Mentions: 9
Published: almost 7 years ago

10.1002/ece3.5309

Evidence of strong stabilizing effects on the evolution of boreoeutherian (Mammalia) dental proportions
Cited by: 16
Author(s): Tesla A. Monson, Jean‐Renaud Boisserie, Marianne F. Brasil, Selene M. Clay, Rena R. Dvoretzky, Shruti Ravindramurthy, Christopher A. Schmitt, Antoine Souron, Risa Takenaka, Peter S. Ungar, Sunwoo Yoo, Michael Zhou, Madeleine E. Zuercher, Leslea J. Hlusko
Software Mentions: 9
Published: over 7 years ago

10.1038/s41598-020-76603-3

VolcaNoseR is a web app for creating, exploring, labeling and sharing volcano plots
Cited by: 230
Author(s): Joachim Goedhart, Martijn S. Luijsterburg
Software Mentions: 9
Published: almost 6 years ago

10.1111/mec.15106

The right response at the right time: Exploring helminth immune modulation in sticklebacks by experimental coinfection
Cited by: 10
Author(s): Agnes Piecyk, Marc Ritter, Martin Kalbe
Software Mentions: 9
Published: over 7 years ago

10.3389/fgene.2021.663617

Multi-Omics Data Analyses Construct a Six Immune-Related Genes Prognostic Model for Cervical Cancer in Tumor Microenvironment
Cited by: 10
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0149237

Optimizing Viral Discovery in Bats
Cited by: 35
Author(s): Caroline Young, Kevin J. Olival
Software Mentions: 9
Published: over 10 years ago

10.3389/fpls.2019.01717

Incorporating Local Adaptation Into Species Distribution Modeling of Paeonia mairei, an Endemic Plant to China
Cited by: 27
Author(s): Qihang Chen, Yijia Yin, Rui Zhao, Yong Yang, Jaime A. Teixeira da Silva, Xiaonan Yu
Software Mentions: 9
Published: over 6 years ago

10.3389/fmolb.2021.675683

Targeted Demethylation of the PLOD2 mRNA Inhibits the Proliferation and Migration of Renal Cell Carcinoma
Cited by: 9
Author(s): Congcong Cao, Qian Ma, Xinbo Huang, Aolin Li, Jun Li, Jing Ye, Yaoting Gui
Software Mentions: 8
Published: over 5 years ago

10.12688/f1000research.13541.1

archiDART v3.0: A new data analysis pipeline allowing the topological analysis of plant root systems
Cited by: 20
Author(s): Benjamin Delory, Li Mao, Christopher N. Topp, Guillaume Lobet
Software Mentions: 8
Published: almost 9 years ago

10.1007/s00248-019-01414-7

Tropical Rainforest Restoration Plantations Are Slow to Restore the Soil Biological and Organic Carbon Characteristics of Old Growth Rainforest
Cited by: 7
Author(s): Mark Bonner, Diane E. Allen, Richard Brackin, Timothy Smith, Tom Lewis, Luke P. Shoo, Susanne Schmidt
Software Mentions: 8
Published: about 7 years ago

10.12688/f1000research.2-192.v2

Cyrface: An interface from Cytoscape to R that provides a user interface to R packages
Cited by: 3
Author(s): Emanuel Gonçalvès, Franz Mirlach, Julio Sáez-Rodríguez
Software Mentions: 8
Published: over 12 years ago

10.3390/cancers13184656

The Evolution and Prognostic Role of Tumour-Infiltrating Lymphocytes and Peripheral Blood-Based Biomarkers in Inflammatory Breast Cancer Patients Treated with Neoadjuvant Chemotherapy
Cited by: 7
Author(s): Christophe Van Berckelaer, Iris Vermeiren, Leonie Vercauteren, Charlotte Rypens, Gizem Öner, Xuan Bich Trinh, Wiebren A.A. Tjalma, Glenn Broeckx, Emmanuelle Charafe‐Jauffret, Steven Van Laere, François Bertucci, Cécile Colpaert, Peter van Dam
Software Mentions: 8
Published: about 5 years ago

10.1038/s41598-019-46487-z

Understanding how birds rebuild fat stores during migration: insights from an experimental study
Cited by: 15
Author(s): Pedro M. Araújo, Iván Viegas, Afonso D. Rocha, Auxiliadora Villegas, John G. Jones, Liliana Mendonça, Jaime A. Ramos, José A. Masero, José A. Alves
Software Mentions: 8
Published: over 7 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pone.0235451

Is YouTube promoting the exotic pet trade? Analysis of the global public perception of popular YouTube videos featuring threatened exotic animals
Cited by: 14
Author(s): Georgia Kate Moloney, Jonathan Tuke, Eleonora Dal Grande, Torben Nielsen, Anne‐Lise Chaber
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0241059

Health related quality of life and satisfaction with care of stroke patients in Budapest: A substudy of the EuroHOPE project
Cited by: 7
Author(s): Ildikó Szőcs, Balázs Dobi, Judit Lám, Károly Orbán-Kis, Unto Häkkinen, Éva Bíró, Dániel Bereczki, Ildikó Vastagh
Software Mentions: 8
Published: about 6 years ago

10.1371/journal.pone.0239639

Monsters with a shortened vertebral column: A population phenomenon in radiating fish Labeobarbus (Cyprinidae)
Cited by: 9
Author(s): А. С. Голубцов, Nikolai B. Korostelev, Б. А. Левин
Software Mentions: 8
Published: almost 6 years ago

10.1038/s41598-019-47953-4

Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial
Cited by: 61
Author(s): Xuan He, Mariana Parenti, Tove Grip, Bo Lönnerdal, Niklas Timby, Magnus Domellöf, Olle Hernell, Carolyn M. Slupsky
Software Mentions: 8
Published: about 7 years ago

10.1111/2041-210X.13422

nosoi: A stochastic agent‐based transmission chain simulation framework in <scp>r</scp>
Cited by: 19
Author(s): Sébastian Lequime, Paul Bastide, Simon Dellicour, Philippe Lemey, Guy Baele
Software Mentions: 8
Published: over 6 years ago

10.3389/fpls.2021.675760

Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata
Cited by: 4
Author(s): Pezhman Safdari, Layla Höckerstedt, Mikael Brosché, Jarkko Salojärvi, Anna‐Liisa Laine
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0176663

Comparing multi-criteria decision analysis and integrated assessment to support long-term water supply planning
Cited by: 20
Author(s): Lisa Scholten, Max Maurer, Judit Lienert
Software Mentions: 8
Published: over 9 years ago

10.1371/journal.pone.0245639

Are we missing the forest for the trees? Conspecific negative density dependence in a temperate deciduous forest
Cited by: 3
Author(s): Kathryn E. Barry, Stefan A. Schnitzer
Software Mentions: 8
Published: over 5 years ago

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