Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: ape

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/ape

Analyses of Phylogenetics and Evolution
102 versions
Latest release: over 1 year ago
374 dependent packages
72,114 downloads last month

Papers Mentioning ape 918

10.1371/journal.pone.0224947
Does caching strategy vary with microclimate in endangered Mt. Graham red squirrels?
Cited by: 1
Author(s): Calebe P. Mendes, John L. Koprowski
Software Mentions: 10
Published: about 5 years ago
10.1016/j.celrep.2020.107885
CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features
Cited by: 9
Author(s): Alexander Greenshields‐Watson, Meriem Attaf, Bruce J. MacLachlan, Thomas Whalley, Cristina Rius, Aaron Wall, Alun G. Lloyd, Hywel Hughes, Kathryn E. Strange, Georgina H Mason, Andrea J. A. Schauenburg, Sarah Hulin-Curtis, James Geary, Yuan Chen, Sarah N. Lauder, Kathryn Smart, Dhanasekaran Vijaykrishna, Miguel L. Grau, Mikhail Shugay, Robert Andrews, Garry Dolton, P.J. Rizkallah, Awen Gallimore, Andrew K. Sewell, Andrew Godkin, David K. Cole
Software Mentions: 10
Published: over 4 years ago
10.1038/s41598-018-32681-y
Medicinal value of sunflower pollen against bee pathogens
Cited by: 77
Author(s): Jonathan J. Giacomini, Jessica Leslie, David R. Tarpy, Evan C. Palmer‐Young, Rebecca E. Irwin, Lynn S. Adler
Software Mentions: 10
Published: about 6 years ago
10.7717/peerj.11222
The postcranial skeleton of <i>Cerrejonisuchus improcerus</i> (Crocodyliformes: Dyrosauridae) and the unusual anatomy of dyrosaurids
Cited by: 1
Author(s): Isaure Scavezzoni, Valentin Fischer
Software Mentions: 10
Published: over 3 years ago
10.1371/journal.pone.0144779
Identifying Centres of Plant Biodiversity in South Australia
Cited by: 33
Author(s): Greg R. Guerin, Ed Biffin, Zdravko Baruch, Andrew J. Lowe
Software Mentions: 10
Published: almost 9 years ago
10.1038/srep42808
Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data
Cited by: 21
Author(s): Fredrick M. Mobegi, Amelieke J. H. Cremers, Marien I. de Jonge, Stephen D. Bentley, Sacha A. F. T. van Hijum, Aldert Zomer
Software Mentions: 10
Published: almost 8 years ago
10.1002/ece3.7563
The interaction of resource use and gene flow on the phenotypic divergence of benthic and pelagic morphs of Icelandic Arctic charr (<i>Salvelinus alpinus</i>)
Cited by: 10
Author(s): Matthew K. Brachmann, Kevin J. Parsons, Skúli Skúlason, Moira M. Ferguson
Software Mentions: 10
Published: over 3 years ago
10.1371/journal.pone.0138031
The Effect of Host-Plant Phylogenetic Isolation on Species Richness, Composition and Specialization of Insect Herbivores: A Comparison between Native and Exotic Hosts
Cited by: 16
Author(s): Julio Miguel Grandez-Rios, Leonardo Lima Bergamini, Walter Santos de Araújo, Fabricio Villalobos, Mário Almeida‐Neto
Software Mentions: 10
Published: about 9 years ago
10.1371/journal.pntd.0008934
An investig-ation into the epidemiology of chikungunya virus across neglected regions of Indonesia
Cited by: 6
Author(s): Sam Stubbs, Edison Johar, Frilasita A. Yudhaputri, Benediktus Yohan, Marsha S. Santoso, Rahma Hayati, Dionisius Denis, Barbara Blacklaws, Ann M. Powers, R. Tedjo Sasmono, Khin Saw Aye Myint, Simon D. W. Frost
Software Mentions: 10
Published: almost 4 years ago
10.1098/rspb.2021.0343
A multi-faceted comparative perspective on elevational beta-diversity: the patterns and their causes
Cited by: 17
Author(s): Yuanbao Du, Liqing Fan, Zaifu Xu, Zhixin Wen, Tianlong Cai, Anderson Feijó, Junhua Hu, Fumin Lei, Qisen Yang, Huijie Qiao
Software Mentions: 10
Published: over 3 years ago
10.1098/rspb.2021.0853
Adaptations to light contribute to the ecological niches and evolution of the terrestrial avifauna
Cited by: 11
Author(s): Ian J. Ausprey
Software Mentions: 10
Published: over 3 years ago
10.1098/rsos.171218
Tongues on the EDGE: language preservation priorities based on threat and lexical distinctiveness
Cited by: 2
Author(s): Nicolas Perrault, Maxwell J. Farrell, T. Jonathan Davies
Software Mentions: 10
Published: almost 7 years ago
10.1093/gigascience/giaa060
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
Cited by: 35
Author(s): Wenxi Wang, Zihao Wang, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo
Software Mentions: 10
Published: over 4 years ago
10.1038/s41396-019-0458-0
Virome heterogeneity and connectivity in waterfowl and shorebird communities
Cited by: 53
Author(s): Michelle Wille, Mǎng Shī, Marcel Klaassen, Aeron C. Hurt, Edward C. Holmes
Software Mentions: 9
Published: over 5 years ago
10.1007/s00040-018-0624-9
The gut microbiome is associated with behavioural task in honey bees
Cited by: 75
Author(s): Julia C. Jones, Carmelo Fruciano, J. H. Marchant, Falk Hildebrand, Kristoffer Forslund, Peer Bork, Philipp Engel, William O. Hughes
Software Mentions: 9
Published: over 6 years ago
10.1002/ece3.6335
High dispersal capacity and biogeographic breaks shape the genetic diversity of a globally distributed reef‐dwelling calcifier
Cited by: 16
Author(s): Martina Prazeres, Raphaël Morard, Thomas E. Roberts, Steve S. Doo, Jamaluddin Jompa, Christiane Schmidt, Marleen Stuhr, Willem Renema, Michal Kučera
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pone.0229887
Characterization of dairy cow rumen bacterial and archaeal communities associated with grass silage and maize silage based diets
Cited by: 4
Author(s): Jueeli D. Vaidya, S. van Gastelen, Hauke Smidt, Caroline M. Plugge, Joan E. Edwards
Software Mentions: 9
Published: over 4 years ago
10.1002/aps3.11344
A basic dd <scp>RAD</scp> seq two‐enzyme protocol performs well with herbarium and silica‐dried tissues across four genera
Cited by: 20
Author(s): Ingrid E. Jordon‐Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pone.0067048
Complete Mitochondrial DNA Sequences of the Threadfin Cichlid (Petrochromis trewavasae) and the Blunthead Cichlid (Tropheus moorii) and Patterns of Mitochondrial Genome Evolution in Cichlid Fishes
Cited by: 40
Author(s): Christoph Fischer, Stephan Koblmüller, Christian Gülly, Christian Schlötterer, Christian Sturmbauer, Gerhard G. Thallinger
Software Mentions: 9
Published: over 11 years ago
10.1186/s12862-020-01671-y
Sex determination systems in reptiles are related to ambient temperature but not to the level of climatic fluctuation
Cited by: 12
Author(s): Paola Cornejo‐Páramo, Andrés Lira‐Noriega, Ciro Ramírez-Suástegui, Fausto Méndez-de-la-Cruz, Tamás Székely, Araxi O. Urrutia, Diego Cortez
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pbio.3001276
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae
Cited by: 37
Author(s): Matthieu Haudiquet, Amandine Nucci, Olaya Rendueles, Eduardo P. C. Rocha
Software Mentions: 9
Published: over 3 years ago
10.1007/s00265-021-03041-0
Neophobia in 10 ungulate species—a comparative approach
Cited by: 14
Author(s): Alina Schaffer, Álvaro López Caicoya, Montserrat Colell, Ruben Holland, Lorenzo von Fersen, Anja Widdig, Federica Amici
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0236084
Mating system is correlated with immunogenetic diversity in sympatric species of Peromyscine mice
Cited by: 0
Author(s): Jesyka Meléndez‐Rosa, Ke Bi, Eileen A. Lacey
Software Mentions: 9
Published: over 4 years ago
10.1186/s12983-016-0162-0
Evolution of body morphology and beak shape revealed by a morphometric analysis of 14 Paridae species
Cited by: 28
Author(s): Shimiao Shao, Quan Qing, Tianlong Cai, Gang Song, Yanhua Qu, Fumin Lei
Software Mentions: 9
Published: over 8 years ago
10.1093/g3journal/jkab238
Whole-genome variation of transposable element insertions in a maize diversity panel
Cited by: 13
Author(s): Yinjie Qiu, Christine H. O’Connor, Rafael Della Coletta, Jonathan S. Renk, Patrick J. Monnahan, Jaclyn M. Noshay, Zhikai Liang, Amanda M. Gilbert, Sarah N. Anderson, Suzanne E. McGaugh, Nathan M. Springer, Candice N. Hirsch
Software Mentions: 9
Published: over 3 years ago
10.1128/mSystems.00815-20
Traditional Human Populations and Nonhuman Primates Show Parallel Gut Microbiome Adaptations to Analogous Ecological Conditions
Cited by: 11
Author(s): Ashok Sharma, Klára J. Petrželková, Barbora Pafčo, Carolyn A. Jost Robinson, Terence Fuh, Brenda A. Wilson, Rebecca M. Stumpf, Manolito Torralba, Ran Blekhman, Bryan A. White, Karen E. Nelson, Steven R. Leigh, Andrés Gómez
Software Mentions: 9
Published: almost 4 years ago
10.1186/s12862-015-0440-z
The influence of ecological and geographical context in the radiation of Neotropical sigmodontine rodents
Cited by: 48
Author(s): Andrés Parada, Guillermo D’Elı́a, R. Eduardo Palma
Software Mentions: 9
Published: about 9 years ago
10.3390/pathogens9080628
Comparative Analysis of the Bacterial and Fungal Communities in the Gut and the Crop of Aedes albopictus Mosquitoes: A Preliminary Study
Cited by: 10
Author(s): Morgane Guégan, Edwige Martin, Claire Valiente Moro
Software Mentions: 9
Published: over 4 years ago
10.7717/peerj.5055
A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon <i>Nitraria</i> L.(Nitrariaceae)
Cited by: 19
Author(s): Amber Woutersen, Phillip E. Jardine, Raúl Giovanni Bogotá-Ángel, Hongxiang Zhang, Daniele Silvestro, Alexandre Antonelli, Elena Gogna, Roy Erkens, William D. Gosling, Guillaume Dupont‐Nivet, Carina Hoorn
Software Mentions: 9
Published: over 6 years ago
10.1038/s41598-021-96431-3
Phytochemistry reflects different evolutionary history in traditional classes versus specialized structural motifs
Cited by: 7
Author(s): Kathryn A. Uckele, Joshua P. Jahner, Eric J. Tepe, Lora A. Richards, Lee A. Dyer, Kaitlin M. Ochsenrider, Casey S. Philbin, Massuo Jorge Kato, Lydia F. Yamaguchi, Matthew L. Forister, Angela M. Smilanich, Craig D. Dodson, Christopher S. Jeffrey, Thomas L. Parchman
Software Mentions: 9
Published: about 3 years ago
10.3390/toxics9010010
Phylogenetic Integration Reveals the Zebrafish Core Microbiome and Its Sensitivity to Environmental Exposures
Cited by: 18
Author(s): Thomas J. Sharpton, Keaton Stagaman, Michael J. Sieler, Holly K. Arnold, Edward W. Davis
Software Mentions: 9
Published: almost 4 years ago
10.1038/s41598-021-98542-3
A differential DNA methylome signature of pulmonary immune cells from individuals converting to latent tuberculosis infection
Cited by: 11
Author(s): Lovisa Karlsson, Jyotirmoy Das, Moa Nilsson, Amanda Tyrén, Isabelle Pehrson, Nina Idh, Shumaila Sayyab, Jakob Paues, César Ugarte-Gil, Melissa Méndez-Aranda, Maria Lerm
Software Mentions: 9
Published: about 3 years ago
10.1111/mec.15120
Lineage specific histories of <i>Mycobacterium tuberculosis</i> dispersal in Africa and Eurasia
Cited by: 69
Author(s): Mary O’Neill, Abigail C. Shockey, Alex Zarley, William Aylward, Vegard Eldholm, Andrew Kitchen, Caitlin S. Pepperell
Software Mentions: 9
Published: over 5 years ago
10.12688/wellcomeopenres.14694.1
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS
Cited by: 161
Author(s): Gerry Tonkin‐Hill, John A. Lees, Stephen D. Bentley, Simon D. W. Frost, Jukka Corander
Software Mentions: 9
Published: over 6 years ago
10.3389/fmicb.2020.00175
Cultivation of Bacteria From Aplysina aerophoba: Effects of Oxygen and Nutrient Gradients
Cited by: 10
Author(s): Johanna Gutleben, Catarina Loureiro, Laura Adriana Ramírez Romero, Sudarshan A. Shetty, René H. Wijffels, Hauke Smidt, Detmer Sipkema
Software Mentions: 9
Published: almost 5 years ago
10.1093/aobpla/plab016
Divergence of stem biomechanics and hydraulics between <i>Bauhinia</i> lianas and trees
Cited by: 6
Author(s): Xiangwu Yan, Yu Song, Fu-Chuan Wu, Shubin Zhang, Jiao‐Lin Zhang
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0241529
Persistence of the ground beetle (Coleoptera: Carabidae) microbiome to diet manipulation
Cited by: 5
Author(s): Anita Silver, Sean Perez, Melanie Gee, Bethany Xu, Shreeya Garg, Kipling Will, Amanjit Gill
Software Mentions: 9
Published: over 3 years ago
10.1038/s41598-019-50565-7
Tradeoffs in hyphal traits determine mycelium architecture in saprobic fungi
Cited by: 14
Author(s): Anika Lehmann, Weiguo Zheng, Katharina Soutschek, Julien Roy, Andrey Yurkov, Matthias C. Rillig
Software Mentions: 9
Published: about 5 years ago
10.1016/j.celrep.2019.01.041
RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
Cited by: 510
Author(s): Gianni Monaco, Bernett Lee, Weili Xu, Seri Mustafah, You Yi Hwang, Christophe Carré, Nicolas Burdin, Lucian Visan, Michele Ceccarelli, Michael Poidinger, Alfred Zippelius, João Pedro de Magalhães, Anis Larbi
Software Mentions: 9
Published: almost 6 years ago
10.1038/s41598-019-42921-4
Haematological traits co-vary with migratory status, altitude and energy expenditure: a phylogenetic, comparative analysis
Cited by: 14
Author(s): Kang Nian Yap, Olivia Tsai, Tony Williams
Software Mentions: 9
Published: over 5 years ago
10.1371/journal.pone.0240218
Spatio-temporal modeling of visceral leishmaniasis in Midwest Brazil: An ecological study of 18-years data (2001–2018)
Cited by: 5
Author(s): Everton Falcão de Oliveira, Alessandra Gutierrez de Oliveira, Carla Cardozo Pinto de Arruda, Wagner de Souza Fernandes, Márcio José de Medeiros
Software Mentions: 9
Published: about 4 years ago
10.3389/fmicb.2020.01398
Microbiome Shifts Associated With the Introduction of Wild Atlantic Horseshoe Crabs (Limulus polyphemus) Into a Touch-Tank Exhibit
Cited by: 9
Author(s): Ariel D. Friel, Sean A. Neiswenter, Cale O. Seymour, Lauren Rose Bali, Ginger McNamara, Fabian Leija, Jack Jewell, Brian P. Hedlund
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pone.0036664
Functional Morphometric Analysis of the Furcula in Mesozoic Birds
Cited by: 33
Author(s): Roger A. Close, Emily J. Rayfield
Software Mentions: 9
Published: over 12 years ago
10.1186/s40168-019-0743-1
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms
Cited by: 128
Author(s): Philipp Rausch, Malte Rühlemann, Shauni Doms, Shauni Doms, Tal Dagan, Katja Dierking, Hanna Domin, Sebastian Fraune, Jakob von Frieling, Ute Hentschel, Femke Anouska Heinsen, Marc P. Höppner, Martin T. Jahn, Cornelia Jaspers, Kohar Annie B. Kissoyan, Daniela Langfeldt, Ateequr Rehman, Thorsten B.H. Reusch, Thomas Roeder, Ruth A. Schmitz, Hinrich Schulenburg, Ryszard Soluch, Felix Sommer, Eva H. Stukenbrock, Nancy Weiland‐Bräuer, Philip Rosenstiel, André Franke, Thomas C. G. Bosch, John F. Baines
Software Mentions: 9
Published: about 5 years ago
10.1371/journal.pone.0220770
Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application
Cited by: 40
Author(s): Edward Lopatto, Jinlyung Choi, Alfredo Colina, Lanying Ma, Adina Howe, Shannon M. Hinsa-Leasure
Software Mentions: 9
Published: over 5 years ago
10.1186/s12862-015-0296-2
Recurrent camouflaged invasions and dispersal of an Asian freshwater gastropod in tropical Africa
Cited by: 11
Author(s): Bert Van Bocxlaer, Catharina Clewing, Jean-Papy Mongindo Etimosundja, Alidor Busanga Kankonda, Oscar Wembo Ndeo, Christian Albrecht
Software Mentions: 9
Published: over 9 years ago
10.1002/mbo3.780
Biases in the metabarcoding of plant pathogens using rust fungi as a model system
Cited by: 13
Author(s): Andreas Makiola, Ian A. Dickie, Robert J. Holdaway, Jamie R. Wood, Kate H. Orwin, Charles K. Lee, Travis R. Glare
Software Mentions: 9
Published: almost 6 years ago
10.1073/pnas.2104254118
Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution
Cited by: 22
Author(s): Nicolas Blavet, Hua Yang, Handong Su, Pavel Solanský, Ryan N. Douglas, Miroslava Karafiátová, Lucie Šimková, Jing Zhang, Yalin Liu, Jie Hou, Xiaowen Shi, Chen Chen, Mohamed El-Walid, Morgan McCaw, Patrice S. Albert, Zhi Gao, Changzeng Zhao, Gil Ben-Zvi, Lior Glick, Guy Kol, Jinghua Shi, Jan Vrána, Hana Šimková, Jonathan C. Lamb, Kathleen J. Newton, R. Kelly Dawe, Jaroslav Doležel, Tieming Ji, Kobi Baruch, Fangpu Han, James A. Birchler, Jan Bartoš
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0204877
Rare haplotype load as marker for lethal mutagenesis
Cited by: 7
Author(s): Josep Gregori, María Eugenia Soria, Isabel Gallego, Mercedes Guerrero-Murillo, Juan Ignacio Esteban, Josep Quer, Celia Perales, Esteban Domingo
Software Mentions: 9
Published: about 6 years ago
10.1098/rspb.2018.0270
Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: over 6 years ago
10.1371/journal.pone.0225936
Improving distribution models of riparian vegetation with mobile laser scanning and hydraulic modelling
Cited by: 2
Author(s): Tua Nylén, Elina Kasvi, Jouni Salmela, Harri Kaartinen, Antero Kukko, Anttoni Jaakkola, Juha Hyyppä, Petteri Alho
Software Mentions: 9
Published: almost 5 years ago
10.1098/rsos.172177
The evolutionary history of polycotylid plesiosaurians
Cited by: 27
Author(s): Valentin Fischer, Roger Benson, Patrick S. Druckenmiller, Hilary F. Ketchum, Nathalie Bardet
Software Mentions: 9
Published: over 6 years ago
10.1002/ece3.2641
Convergent evolution in social swallows (Aves: Hirundinidae)
Cited by: 12
Author(s): Allison E. Johnson, Jonathan S. Mitchell, Mary Bomberger Brown
Software Mentions: 8
Published: almost 8 years ago
10.1371/journal.pone.0185487
The fine-scale genetic structure and evolution of the Japanese population
Cited by: 26
Author(s): Fumihiko Takeuchi, Tomohiro Katsuya, Ryosuke Kimura, Toru Nabika, Minoru Isomura, Takayoshi Ohkubo, Yasuharu Tabara, Ken Yamamoto, Mitsuhiro Yokota, Xuanyao Liu, Woei-Yuh Saw, Dolikun Mamatyusupu, Wenjun Yang, Shuhua Xu, Yik-Ying Teo, Norihiro Kato
Software Mentions: 8
Published: about 7 years ago
10.1093/icb/icw041
Suchian Feeding Success at the Interface of Ontogeny and Macroevolution
Cited by: 33
Author(s): Paul M. Gignac, Haley O’Brien
Software Mentions: 8
Published: over 8 years ago
10.7554/eLife.51261
The evolution of the vestibular apparatus in apes and humans
Cited by: 21
Author(s): Alessandro Urciuoli, Clément Zanolli, Amélie Beaudet, Jean Dumoncel, Frédéric Santos, Salvador Moyà‐Solà, David M. Alba
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0100687
In the Wake of Invasion: Tracing the Historical Biogeography of the South American Cricetid Radiation (Rodentia, Sigmodontinae)
Cited by: 65
Author(s): Rafael N. Leite, Sergios‐Orestis Kolokotronis, Francisca Cunha Almeida, Fernanda P. Werneck, Donald E. Rogers, Marcelo Weksler
Software Mentions: 8
Published: over 10 years ago
10.1371/journal.pbio.2004830
Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species
Cited by: 73
Author(s): Reuben W. Nowell, Pedro Almeida, Christopher G. Wilson, Thomas P. Smith, Diego Fontaneto, Alastair Crisp, Gos Micklem, Alan Tunnacliffe, Chiara Boschetti, Timothy G. Barraclough
Software Mentions: 8
Published: over 6 years ago
10.1186/s13104-016-2171-7
The effect of DNA extraction methodology on gut microbiota research applications
Cited by: 54
Author(s): Konstantinos Gerasimidis, Martin Bertz, Christopher Quince, K. T. Brunner, Alanna E. Bruce, Emilie Combet, Szymon T. Calus, Nicholas J. Loman, Umer Zeeshan Ijaz
Software Mentions: 8
Published: over 8 years ago
10.1002/ece3.2723
Different categories of biodiversity explain productivity variation after fertilization in a Tibetan alpine meadow community
Cited by: 19
Author(s): Xiaolong Zhou, Zhihao Guo, Pengfei Zhang, Honglin Li, Chengjin Chu, Xilai Li, Guozhen Du
Software Mentions: 8
Published: over 7 years ago
10.1002/ece3.6263
Diet specialization and brood parasitism in cuckoo species
Cited by: 4
Author(s): Federico Morelli, Yanina Benedetti, Anders Pape Møller
Software Mentions: 8
Published: over 4 years ago
10.1186/s12866-021-02222-1
Patterns of yeast diversity distribution and its drivers in rhizosphere soil of Hami melon orchards in different regions of Xinjiang
Cited by: 7
Author(s): Shanshan Zhu, Yonghui Lei, Chong Wang, Yu‐Mei Wei, Chuncheng Wang, Yanfei Sun
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.pone.0226689
Role of ecology in shaping external nasal morphology in bats and implications for olfactory tracking
Cited by: 15
Author(s): Alyson F. Brokaw, Michael Smotherman
Software Mentions: 8
Published: almost 5 years ago
10.1002/ece3.6172
Habitat transitions alter the adaptive landscape and shape phenotypic evolution in needlefishes (Belonidae)
Cited by: 10
Author(s): Matthew A. Kolmann, Michael D. Burns, Justin Y. K. Ng, Nathan R. Lovejoy, Devin D. Bloom
Software Mentions: 8
Published: over 4 years ago
10.1186/s12864-020-6653-6
Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp
Cited by: 14
Author(s): Gabriel A. Vignolle, Robert L. Mach, Astrid R. Mach-Aigner, Christian Derntl
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pone.0212248
Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti
Cited by: 17
Author(s): Ruvini V. Lelwala, Pasi K. Korhonen, Neil D. Young, Jason B. Scott, Peter K. Ades, Robin B. Gasser, P. W. J. Taylor
Software Mentions: 8
Published: over 5 years ago
10.1093/database/baz098
Progress in the study of genome size evolution in Asteraceae: analysis of the last update
Cited by: 14
Author(s): Daniel Vitales, P. Fernández, Teresa Garnatje, Sònia Garcia
Software Mentions: 8
Published: almost 6 years ago
10.7717/peerj.5179
<i>AnnotationBustR</i>: an R package to extract subsequences from GenBank annotations
Cited by: 9
Author(s): Samuel R. Borstein, Brian C. O’Meara
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0231526
Disentangling the influence of ecological and historical factors on seed germination and seedling types in a Neotropical dry forest
Cited by: 5
Author(s): Jorge Cortés‐Flores, Guadalupe Cornejo‐Tenorio, María Esther Sánchez‐Coronado, Alma Orozco‐Segovia, Guillermo Ibarra‐Manríquez
Software Mentions: 8
Published: over 4 years ago
10.3389/fpls.2020.601975
Flower Diversification Across “Pollinator Climates”: Sensory Aspects of Corolla Color Evolution in the Florally Diverse South American Genus Jaborosa (Solanaceae)
Cited by: 9
Author(s): Marcela Moré, Ana C. Ibañez, María Eugenia Drewniak, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: almost 4 years ago
10.1128/mBio.00637-18
How, When, and Where Relic DNA Affects Microbial Diversity
Cited by: 114
Author(s): Jay T. Lennon, Mario E. Muscarella, Sarah A. Placella, Brent K Lehmkuhl
Software Mentions: 8
Published: over 6 years ago
10.3389/fpls.2017.00930
The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.
Cited by: 44
Author(s): Jennifer Estendorfer, Barbara Stempfhuber, Paula Haury, Gisle Vestergaard, Matthias C. Rillig, Jasmin Joshi, Peter Schröder, Michael Schloter
Software Mentions: 8
Published: over 7 years ago
10.1038/s41598-021-97491-1
Metabolic drift in the aging nervous system is reflected in human cerebrospinal fluid
Cited by: 5
Author(s): Kristian Peters, Stephanie Herman, Payam Emami Khoonsari, Joachim Burman, Steffen Neumann, Kim Kultima
Software Mentions: 8
Published: about 3 years ago
10.1038/s42003-021-01658-5
Colonization and genetic diversification processes of Leishmania infantum in the Americas
Cited by: 30
Author(s): Philipp Schwabl, Mariana Côrtes Boité, Giovanni Bussotti, Arne Jacobs, Björn Andersson, Otacílio C. Moreira, Anita Leocádio Freitas-Mesquita, José Roberto Meyer‐Fernandes, Erich Loza Telleria, Yara M. Traub-Csekö, Slavica Vaselek, Tereza Leštinová, Petr Volf, Fernanda Nazaré Morgado, Renato Porrozzi, Martin S. Llewellyn, Gérald F. Späth, Elisa Cupolillo
Software Mentions: 8
Published: almost 4 years ago
10.1186/s12862-018-1251-9
Molecular variation across populations of a widespread North American firefly, Photinus pyralis, reveals that coding changes do not underlie flash color variation or associated visual sensitivity
Cited by: 12
Author(s): Sarah E. Lower, Kathrin F. Stanger‐Hall, David W. Hall
Software Mentions: 8
Published: about 6 years ago
10.1186/s12863-020-00921-8
Genome wide analysis reveals genetic divergence between Goldsinny wrasse populations
Cited by: 5
Author(s): Eva Jansson, François Besnier, Ketil Malde, Carl André, Geir Dahle, Kevin A. Glover
Software Mentions: 8
Published: about 4 years ago
10.3389/fmicb.2021.696398
The Microbiome of the Medicinal Plants Achillea millefolium L. and Hamamelis virginiana L.
Cited by: 10
Author(s): Simon Sauer, Leon Dlugosch, Dietmar R. Kammerer, Florian C. Stintzing, Meinhard Simon
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-019-50858-x
Landscape determinants of density of blacklegged ticks, vectors of Lyme disease, at the northern edge of their distribution in Canada
Cited by: 19
Author(s): Benoit Talbot, Andreea Slatculescu, Charles Thickstun, Jules K. Koffi, Patrick A. Leighton, Roman McKay, Manisha A. Kulkarni
Software Mentions: 8
Published: about 5 years ago
10.1093/aobpla/plab018
Alpine speciation and morphological innovations: revelations from a species-rich genus in the northern hemisphere
Cited by: 5
Author(s): Yazhou Zhang, Jianguo Chen, Hang Sun
Software Mentions: 8
Published: over 3 years ago
10.3389/fpls.2021.647375
Molecular Evolution and Organization of Ribosomal DNA in the Hawkweed Tribe Hieraciinae (Cichorieae, Asteraceae)
Cited by: 11
Author(s): Judith Fehrer, Renata Slavíková, Ladislava Paštová, Jiřina Josefiová, Patrik Mráz, Jindřich Chrtek, Yann Bertrand
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-018-35827-0
Convergent evolution of an extreme dietary specialisation, the olfactory system of worm-eating rodents
Cited by: 31
Author(s): Quentin Martinez, Renaud Lebrun, Anang S. Achmadi, Jacob A. Esselstyn, Alistair R. Evans, Lawrence R. Heaney, Roberto Portela Miguez, Kevin C. Rowe, Pierre Henri Fabre
Software Mentions: 8
Published: almost 6 years ago
10.1038/s41598-019-47953-4
Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial
Cited by: 61
Author(s): Xuan He, Mariana Parenti, Tove Grip, Bo Lönnerdal, Niklas Timby, Magnus Domellöf, Olle Hernell, Carolyn M. Slupsky
Software Mentions: 8
Published: over 5 years ago
10.3390/toxins9080242
Enter the Dragon: The Dynamic and Multifunctional Evolution of Anguimorpha Lizard Venoms
Cited by: 36
Author(s): Ivan Koludarov, Timothy N. W. Jackson, Bianca op den Brouw, James Dobson, Daniel Dashevsky, Kevin Arbuckle, Christofer J. Clemente, Edward J. Stockdale, Chip Cochran, Jordan Debono, Carson Stephens, Nadya Panagides, Bin Li, Mary-Louise Roy Manchadi, Aude Violette, Rudy Fourmy, Iwan Hendrikx, Amanda Nouwens, Judith A. Clements, Paolo Martelli, Hang Fai Kwok
Software Mentions: 8
Published: over 7 years ago
10.1371/journal.pone.0216270
Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA
Cited by: 138
Author(s): Tyson Wepprich, Jeffrey R. Adrion, Leslie Ries, Jerome Wiedmann, Nick M. Haddad
Software Mentions: 8
Published: over 5 years ago
10.3389/fmicb.2021.686759
“Jumping Jack”: Genomic Microsatellites Underscore the Distinctiveness of Closely Related Pseudoperonospora cubensis and Pseudoperonospora humuli and Provide New Insights Into Their Evolutionary Past
Cited by: 2
Author(s): Marcin Nowicki, Denita Hadziabdic, Robert N. Trigiano, Sarah L. Boggess, Loukas Kanetis, Phillip A. Wadl, Peter S. Ojiambo, Marc A. Cubeta, Otmar Spring, Marco Thines, Fabian Runge, Brian E. Scheffler
Software Mentions: 8
Published: over 3 years ago
10.1186/1471-2148-13-134
Phylogenetic signal in the acoustic parameters of the advertisement calls of four clades of anurans
Cited by: 42
Author(s): Bruno Gingras, Elmira Mohandesan, Drasko Boko, W. Tecumseh Fitch
Software Mentions: 8
Published: almost 12 years ago
10.1038/s41598-017-09154-9
Analysis of spatial genetic variation reveals genetic divergence among populations of Primula veris associated to contrasting habitats
Cited by: 3
Author(s): Pablo Deschepper, Rein Brys, Miguel A. Fortuna, Hans Jacquemyn
Software Mentions: 8
Published: over 7 years ago
10.3390/v12111240
TBEV Subtyping in Terms of Genetic Distance
Cited by: 19
Author(s): Andrei A. Deviatkin, Galina G. Karganova, Yulia A. Vakulenko
Software Mentions: 8
Published: about 4 years ago
10.3389/fmicb.2019.02761
Differently Pre-treated Alfalfa Silages Affect the in vitro Ruminal Microbiota Composition
Cited by: 6
Author(s): Thomas Hartinger, Joan E. Edwards, Ruth Gómez Expósito, Hauke Smidt, Cajo J. F. ter Braak, N. Gresner, K. H. Südekum
Software Mentions: 8
Published: almost 5 years ago
10.1098/rsos.210664
A giant nektobenthic radiodont from the Burgess Shale and the significance of hurdiid carapace diversity
Cited by: 13
Author(s): Jean‐Bernard Caron, Joseph Moysiuk
Software Mentions: 8
Published: about 3 years ago
10.1186/s12862-017-0976-1
The effect of body size evolution and ecology on encephalization in cave bears and extant relatives
Cited by: 9
Author(s): Kristof Veitschegger
Software Mentions: 8
Published: over 7 years ago
10.1098/rsos.181588
Correlated evolution of neck length and leg length in birds
Cited by: 27
Author(s): Christine Böhmer, Olivia Plateau, Raphaël Cornette, Anick Abourachid
Software Mentions: 8
Published: over 5 years ago
10.1038/sdata.2019.34
Global transcriptome analysis of pig induced pluripotent stem cells derived from six and four reprogramming factors
Cited by: 11
Author(s): T. Fukuda, Keiko Doi, Kenichiro Donai, Kazumasa Takahashi, Hisato Kobayashi, Takashi Hirano, Katsuhiko Nishimori, Hiroshi Yasue
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pgen.1009253
Resistance to pirimiphos-methyl in West African Anopheles is spreading via duplication and introgression of the Ace1 locus
Cited by: 22
Author(s): Xavier Grau‐Bové, Eric R. Lucas, Dimitra Pipini, Emily J. Rippon, Arjèn Emiel van 't Hof, Constant Edi, Samuel Dadzie, Alexander Egyir-Yawson, John Essandoh, Joseph Chabi, Luc Djogbénou, Nicholas J. Harding, Alistair Miles, Dominic P. Kwiatkowski, Martin J. Donnelly, David Weetman
Software Mentions: 8
Published: almost 4 years ago
10.1099/mgen.0.000174
The complete replicons of 16 Ensifer meliloti strains offer insights into intra- and inter-replicon gene transfer, transposon-associated loci, and repeat elements
Cited by: 19
Author(s): Matthew S. Nelson, Joseph Guhlin, Brendan Epstein, Peter Tiffin, Michael J. Sadowsky
Software Mentions: 8
Published: over 6 years ago
10.1111/2041-210X.12490
hext , a software supporting tree‐based screens for hybrid taxa in multilocus data sets, and an evaluation of the homoplasy excess test
Cited by: 4
Author(s): Kevin Schneider, Stephan Koblmüller, Kristina M. Sefc
Software Mentions: 8
Published: about 9 years ago
10.1111/evo.12483
SEXUAL SPECIES ARE SEPARATED BY LARGER GENETIC GAPS THAN ASEXUAL SPECIES IN ROTIFERS
Cited by: 34
Author(s): Cuong Q. Tang, Ulrike Obertegger, Diego Fontaneto, Timothy G. Barraclough
Software Mentions: 8
Published: over 10 years ago
10.1002/ece3.7995
The hidden side of diversity: Effects of imperfect detection on multiple dimensions of biodiversity
Cited by: 7
Author(s): Aline Richter, Gabriel Nakamura, Cristiano Agra Iserhard, Leandro da Silva Duarte
Software Mentions: 8
Published: over 3 years ago
10.1371/journal.ppat.1006525
Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
Cited by: 53
Author(s): Olaya Rendueles, Marc García-Garcerá, Bertrand Néron, Marie Touchon, Eduardo P. C. Rocha
Software Mentions: 8
Published: over 7 years ago
10.1002/ece3.5466
Broodmate aggression and life history variation in accipitrid birds of prey
Cited by: 9
Author(s): Tomás Redondo, J.M. Latre Romero, Ricardo Dı́az-Delgado, Jenö Nagy
Software Mentions: 8
Published: over 5 years ago