Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/g3journal/jkab238

https://doi.org/10.1093/g3journal/jkab238

Whole-genome variation of transposable element insertions in a maize diversity panel

Cited by: 13
Author(s): Yinjie Qiu, Christine H. O’Connor, Rafael Della Coletta, Jonathan S. Renk, Patrick J. Monnahan, Jaclyn M. Noshay, Zhikai Liang, Amanda M. Gilbert, Sarah N. Anderson, Suzanne E. McGaugh, Nathan M. Springer, Candice N. Hirsch
Published: over 3 years ago

Software Mentions 9

cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: Platypus
Single-Cell Immune Repertoire and Gene Expression Analysis
Papers that mentioned: 218
cran: plink
IRT Separate Calibration Linking Methods
Papers that mentioned: 399
cran: StAMPP
Statistical Analysis of Mixed Ploidy Populations
Papers that mentioned: 58
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: nj
Triangle plots
Papers that mentioned: 2
pypi: Platypus
A minimal language
Papers that mentioned: 218
pypi: plink
A full featured Tk-based knot and link editor
Papers that mentioned: 399