Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: PERMANOVA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA
Multivariate Analysis of Variance Based on Distances and
Permutations
2 versions
Latest release: over 2 years ago
299 downloads last month
Papers Mentioning PERMANOVA 6,292
10.3389/fmicb.2020.01376
Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?Cited by: 28
Author(s): Ilya B. Slizovskiy, Kingshuk Mukherjee, Christopher Dean, Christina Boucher, Noelle Noyes
Software Mentions: 8
Published: almost 4 years ago
10.1007/s12031-020-01787-2
Studying Autism Using Untargeted Metabolomics in Newborn Screening SamplesCited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: over 3 years ago
10.1002/acn3.51441
Gut microbiome is associated with multiple sclerosis activity in childrenCited by: 18
Author(s): Mary Horton, Kathryn McCauley, Douglas Fadrosh, Kei E. Fujimura, Jennifer Graves, Jayne Ness, Yolanda Wheeler, Mark Gorman, Leslie Benson, Bianca Weinstock‐Guttman, Amy Waldman, Moses Rodriguez, Jan‐Mendelt Tillema, Lauren Krupp, Anita Belman, Soe Mar, Mary Rensel, Tanuja Chitnis, T. Charles Casper, John Rose, Janace Hart, Xiaorong Shao, Helen Tremlett, Susan V. Lynch, Lisa F. Barcellos, Emmanuelle Waubant
Software Mentions: 8
Published: almost 3 years ago
10.1038/s41396-021-00902-4
Intracellular bacteria are common and taxonomically diverse in cultured and in hospite algal endosymbionts of coral reefsCited by: 51
Author(s): Justin Maire, Sam K. Girvan, Sophie E. Barkla, Alexis Perez‐Gonzalez, David J. Suggett, Linda L. Blackall, Madeleine J. H. van Oppen
Software Mentions: 8
Published: over 3 years ago
10.1038/s41396-019-0383-2
Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in rootsCited by: 596
Author(s): Samiran Banerjee, Florian Walder, Lucie Büchi, Marion Meyer, Alain Held, Andreas Gattinger, Thomas Keller, Raphaël Charles, Marcel G. A. van der Heijden
Software Mentions: 8
Published: about 5 years ago
10.3389/fmicb.2021.644828
The Cheese Production Facility Microbiome Exhibits Temporal and Spatial VariabilityCited by: 12
Author(s): Jared Johnson, Chris Curtin, Joy Waite‐Cusic
Software Mentions: 8
Published: about 3 years ago
10.1186/s12866-020-1716-z
Repeated inoculation with fresh rumen fluid before or during weaning modulates the microbiota composition and co-occurrence of the rumen and colon of lambsCited by: 31
Author(s): Shaobo Yu, Guangyu Zhang, Zhibo Liu, Peng Wu, Zhongtang Yu, Jiakun Wang
Software Mentions: 8
Published: over 4 years ago
10.1038/s41396-020-0621-7
Spatiotemporal dynamics of the archaeal community in coastal sediments: assembly process and co-occurrence relationshipCited by: 120
Author(s): Jiwen Liu, Shangqing Zhu, Xiaoyue Liu, Peng Yao, Tiantian Ge, Xiao‐Hua Zhang
Software Mentions: 8
Published: about 4 years ago
10.3389/fmicb.2021.676615
Attributes of Drying Define the Structure and Functioning of Microbial Communities in Temperate Riverbed SedimentCited by: 7
Author(s): José Schreckinger, Michael Mutz, Clara Mendoza‐Lera, Aline Frossard
Software Mentions: 8
Published: almost 3 years ago
10.3389/fmicb.2020.626713
Temporal Dynamics of Cloacal Microbiota in Adult Laying Chickens With and Without Access to an Outdoor RangeCited by: 6
Author(s): Janneke Schreuder, Francisca C. Velkers, Alex Bossers, Ruth Bouwstra, W.F. de Boer, Pim van Hooft, J.A. Stegeman, Stephanie D. Jurburg
Software Mentions: 8
Published: over 3 years ago
10.1128/mSphere.00916-19
Dual and Triple Epithelial Coculture Model Systems with Donor-Derived Microbiota and THP-1 Macrophages To Mimic Host-Microbe Interactions in the Human Sinonasal CavitiesCited by: 15
Author(s): Charlotte De Rudder, Marta Calatayud, Sarah Lebeer, Tom Van de Wiele
Software Mentions: 8
Published: about 4 years ago
10.1128/mSystems.00174-16
Distinct Biogeographic Patterns for Archaea, Bacteria, and Fungi along the Vegetation Gradient at the Continental Scale in Eastern ChinaCited by: 89
Author(s): Bin Ma, Zhongmin Dai, Haizhen Wang, Melissa Dsouza, Xingmei Liu, Yan He, Jianjun Wu, Jorge L. Mazza Rodrigues, Jack A. Gilbert, Philip C. Brookes, Jianming Xu
Software Mentions: 8
Published: about 7 years ago
10.1128/mSphere.00488-17
Novel ITS1 Fungal Primers for Characterization of the MycobiomeCited by: 68
Author(s): Mykhaylo Usyk, Christine P. Zolnik, Hitesh D. Patel, Michael H. Levi, Robert D. Burk
Software Mentions: 8
Published: over 6 years ago
10.1128/mSystems.00122-17
Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic DevelopmentCited by: 27
Author(s): Keaton Stagaman, Tara J Cepon-Robins, Melissa A. Liebert, Theresa E. Gildner, Samuel S. Urlacher, Felicia C. Madimenos, Karen Guillemin, J. Josh Snodgrass, Lawrence S. Sugiyama, Brendan J. M. Bohannan
Software Mentions: 8
Published: about 6 years ago
10.3389/fmicb.2021.632935
Co-Occurrence of Listeria spp. and Spoilage Associated Microbiota During Meat Processing Due to Cross-Contamination EventsCited by: 19
Author(s): Benjamin Zwirzitz, Stefanie U. Wetzels, Emmanuel D. Dixon, Svenja Fleischmann, Evelyne Selberherr, Sarah Thalguter, Narciso M. Quijada, Monika Dzieciol, Martin Wagner, Beatrix Stessl
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-020-69828-9
Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae)Cited by: 0
Author(s): Jonas Frankel-Bricker
Software Mentions: 8
Published: almost 4 years ago
10.1186/s40168-018-0468-6
Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primateCited by: 44
Author(s): Pål Trosvik, Eric J. de Muinck, Eli Knispel Rueness, Peter J. Fashing, Evan C. Beierschmitt, Kadie R. Callingham, Jacob B. Kraus, Thomas H. Trew, Amera Moges, Addisu Mekonnen, Vivek V. Venkataraman, Nga Nguyen
Software Mentions: 8
Published: about 6 years ago
10.3390/microorganisms8091265
Modulation of Gut Microbiota in Korean Navy Trainees following a Healthy Lifestyle ChangeCited by: 10
Author(s): Young Hun Jung, Setu Bazie Tagele, HyunWoo Son, Jerald Conrad Ibal, Dorsaf Kerfahi, Hyunju Yun, Bora Lee, Clara Yongjoo Park, Eun Soo Kim, Sang-Jun Kim, Jae‐Ho Shin
Software Mentions: 8
Published: over 3 years ago
10.3390/microorganisms9091873
Nutrient Enrichment Predominantly Affects Low Diversity Microbiomes in a Marine Trophic Symbiosis between Algal Farming Fish and CoralsCited by: 5
Author(s): Adriana Messyasz, Rebecca L. Maher, Sonora S. Meiling, Rebecca Vega Thurber
Software Mentions: 8
Published: over 2 years ago
10.1038/s41598-019-38483-0
Metabotyping as a Stopover in Genome-to-Phenome MappingCited by: 31
Author(s): Pubudu Handakumbura, Bryan Stanfill, Albert Rivas‐Ubach, Dan Fortin, John P. Vogel, Christer Jansson
Software Mentions: 8
Published: over 5 years ago
10.1038/s41598-019-39638-9
Gut microbiota of the European Brown Hare (Lepus europaeus)Cited by: 14
Author(s): Gabrielle Stalder, Beate Pinior, Benjamin Zwirzitz, Igor Loncaric, Dennis Jakupović, Sebastian Vetter, Steve Smith, Annika Posautz, Franz Hoelzl, Martin Wagner, Daniel Hoffmann, Anna Kübber‐Heiss, Evelyne Mann
Software Mentions: 8
Published: about 5 years ago
10.1186/s42523-021-00111-6
Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa)Cited by: 2
Author(s): Bridget Chalifour, Jingchun Li
Software Mentions: 8
Published: almost 3 years ago
10.1038/s41598-018-34019-0
Microbial structure and function in infant and juvenile rhesus macaques are primarily affected by age, not vaccination statusCited by: 4
Author(s): Yu Hasegawa, Britni Curtis, Vernon Yutuc, Megan Rulien, Kelly Morrisroe, Kristin Watkins, Clayton Ferrier, Chris English, Laura Hewitson, Carolyn M. Slupsky
Software Mentions: 8
Published: over 5 years ago
10.1038/s41598-018-34921-7
Terminal restriction fragment length polymorphism is an “old school” reliable technique for swift microbial community screening in anaerobic digestionCited by: 37
Author(s): Jo De Vrieze, Umer Zeeshan Ijaz, Aaron Marc Saunders, Susanne Theuerl
Software Mentions: 8
Published: over 5 years ago
10.1093/gigascience/giz004
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approachesCited by: 103
Author(s): Darshan B. Dhakan, Abhijit Maji, Ashok Sharma, Rituja Saxena, Joby Pulikkan, Tony Grace, Andrés Gómez, Joy Scaria, Katherine R. Amato, Vineet K. Sharma
Software Mentions: 8
Published: over 5 years ago
10.1186/s12864-020-6703-0
Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical predictionCited by: 26
Author(s): Xubo Qian, Yong‐Xin Liu, Xiaohong Ye, Wen Jie Zheng, Shaoxia Lv, Miaojun Mo, Jinjing Lin, Wen-Qin Wang, Weihan Wang, Xianning Zhang, Meiping Lu
Software Mentions: 8
Published: about 4 years ago
10.1186/s13073-017-0428-y
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson’s disease patientsCited by: 378
Author(s): Janis R. Bedarf, Falk Hildebrand, Luís Pedro Coelho, Shinichi Sunagawa, Mohammad Bahram, Felix Goeser, Peer Bork, Ullrich Wüllner
Software Mentions: 8
Published: about 7 years ago
10.1186/s12864-020-06971-7
Comparative genomic analysis of Flavobacteriaceae: insights into carbohydrate metabolism, gliding motility and secondary metabolite biosynthesisCited by: 44
Author(s): Asimenia Gavriilidou, Johanna Gutleben, Dennis Versluis, Francesca Forgiarini, Mark W. J. van Passel, Colin J. Ingham, Hauke Smidt, Detmer Sipkema
Software Mentions: 8
Published: over 3 years ago
10.3389/fmicb.2019.01834
Captivity and Infection by the Fungal Pathogen Batrachochytrium salamandrivorans Perturb the Amphibian Skin MicrobiomeCited by: 35
Author(s): Kieran A. Bates, Jennifer Shelton, Victoria L. Mercier, Kevin Hopkins, Xavier A. Harrison, Silviu O. Petrovan, Matthew C. Fisher
Software Mentions: 8
Published: over 4 years ago
10.1128/mSystems.00152-21
Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal PigletsCited by: 2
Author(s): Shriram Patel, Abel A. Vlasblom, Koen M. Verstappen, Aldert Zomer, Ad C. Fluit, Malbert R. C. Rogers, Jaap A. Wagenaar, Marcus J. Claesson, Birgitta Duim
Software Mentions: 8
Published: over 2 years ago
10.1038/s41396-021-00949-3
Social networks strongly predict the gut microbiota of wild miceCited by: 51
Author(s): Aura Raulo, Bryony Allen, Tanya Troitsky, Arild Husby, Josh A. Firth, Tim Coulson, Sarah C. L. Knowles
Software Mentions: 8
Published: about 3 years ago
10.1080/19490976.2021.1903289
Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiotaCited by: 9
Author(s): Mariia Taguer, Ben Shapiro, Corinne F. Maurice
Software Mentions: 8
Published: over 3 years ago
10.3389/fmicb.2019.02492
Do Organic Substrates Drive Microbial Community Interactions in Arctic Snow?Cited by: 17
Author(s): Benoît Bergk Pinto, Lorrie Maccario, Aurélien Dommergue, Timothy M. Vogel, Catherine Larose
Software Mentions: 8
Published: over 4 years ago
10.1093/molbev/msab029
Herbicide Selection Promotes Antibiotic Resistance in Soil MicrobiomesCited by: 56
Author(s): Hanpeng Liao, Xi Li, Qiue Yang, Yudan Bai, Peng Cui, Chang Wen, Chen Liu, Zhi Chen, Jiahuan Tang, Jiangang Che, Zhen Yu, Stefan Geisen, Shungui Zhou, Ville‐Petri Friman, Yong‐Guan Zhu
Software Mentions: 8
Published: over 3 years ago
10.1093/molbev/msaa135
Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral MicrobiomeCited by: 25
Author(s): Jaelle C. Brealey, Henrique G. Leitão, Tom van der Valk, Wenbo Xu, Katia Bougiouri, Love Dalén, Katerina Guschanski
Software Mentions: 8
Published: almost 4 years ago
10.3389/fmicb.2018.03247
Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary ProbioticsCited by: 45
Author(s): S. R. Gupta, Adriána Fečkaninová, Jep Lokesh, Jana Koščová, Mette Sørensen, Jorge M. O. Fernandes, Viswanath Kiron
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0134502
Identifying Shifts in Leaf-Litter Ant Assemblages (Hymenoptera: Formicidae) across Ecosystem Boundaries Using Multiple Sampling MethodsCited by: 15
Author(s): Michal Wiezik, Marek Svitok, Adela Wieziková, Martin Dovčiak
Software Mentions: 8
Published: almost 9 years ago
10.1038/s41598-017-14785-z
Poly-β-hydroxybutyrate administration during early life: effects on performance, immunity and microbial community of European sea bass yolk-sac larvaeCited by: 18
Author(s): Andrea Franke, Olivia Roth, Peter De Schryver, Till Bayer, Linsey Garcia‐Gonzalez, Sven Künzel, Peter Bossier, Joanna J. Miest, Catriona Clemmesen
Software Mentions: 8
Published: over 6 years ago
10.1038/s41598-021-91118-1
The presence of Pseudogymnoascus destructans, a fungal pathogen of bats, correlates with changes in microbial metacommunity structureCited by: 3
Author(s): Matthew Grisnik, Joshua B. Grinath, Donald M. Walker
Software Mentions: 8
Published: almost 3 years ago
10.1093/cz/zoab026
Hormonal modulation of reproduction and fertility signaling in polistine waspsCited by: 8
Author(s): Cíntia Akemi Oi, Rafael Carvalho da Silva, I. D. R. Stevens, Helena Mendes Ferreira, Fábio Santos do Nascimento, Tom Wenseleers
Software Mentions: 8
Published: about 3 years ago
10.3390/microorganisms9091943
Fungi in Permafrost-Affected Soils of the Canadian Arctic: Horizon- and Site-Specific Keystone Taxa Revealed by Co-Occurrence NetworkCited by: 6
Author(s): Milan Varsadiya, Tim Urich, Gustaf Hugelius, Jiří Bárta
Software Mentions: 8
Published: over 2 years ago
10.1128/mSystems.01153-20
Bacterial Communities in Concrete Reflect Its Composite Nature and Change with WeatheringCited by: 8
Author(s): E. Anders Kiledal, Jessica L. Keffer, Julia A. Maresca
Software Mentions: 8
Published: almost 3 years ago
10.3389/fmicb.2017.02414
Plant Phylogeny and Life History Shape Rhizosphere Bacterial Microbiome of Summer Annuals in an Agricultural FieldCited by: 48
Author(s): Bryan D. Emmett, Nicholas D. Youngblut, Daniel H. Buckley, Laurie E. Drinkwater
Software Mentions: 8
Published: over 6 years ago
10.3389/fmicb.2019.02872
Soil Bacterial and Fungal Communities Exhibit Distinct Long-Term Responses to Disturbance in Temperate ForestsCited by: 33
Author(s): Ernest D. Osburn, Steven G. McBride, Frank O. Aylward, Brian D. Badgley, Brian D. Strahm, Jennifer D. Knoepp, John E. Barrett
Software Mentions: 8
Published: over 4 years ago
10.3389/fmicb.2020.01045
Effects of Intra- and Interspecific Plant Density on Rhizosphere Bacterial CommunitiesCited by: 23
Author(s): Andrea Cavalieri, Friedhelm Bak, Adriana M. García-Lemos, Jacob Weiner, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 8
Published: almost 4 years ago
10.3390/microorganisms9061153
Variation in Human Milk Composition Is Related to Differences in Milk and Infant Fecal Microbial CommunitiesCited by: 30
Author(s): Ryan M. Pace, Janet E. Williams, Bianca Robertson, Kimberly A. Lackey, Courtney L. Meehan, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela G. Kita, Linda J. Kvist, Gloria E. Otoo, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Mark A. McGuire, Lars Bode, Michelle K. McGuire
Software Mentions: 8
Published: almost 3 years ago
10.3390/microorganisms7120662
Grapevine Phyllosphere Community Analysis in Response to Elicitor Application against Powdery MildewCited by: 17
Author(s): Luca Nerva, Chiara Pagliarani, Massimo Pugliese, M. Monchiero, Solène Gonthier, M. L. Gullino, Giorgio Gambino, Walter Chitarra
Software Mentions: 8
Published: over 4 years ago
10.3389/fmicb.2018.02621
Elevated CO2 Has Little Influence on the Bacterial Communities Associated With the pH-Tolerant Coral, Massive Porites spp.Cited by: 18
Author(s): Paul A. O’Brien, Hillary A. Smith, Stewart Fallon, Katharina Fabricius, Bette L. Willis, Kathleen M. Morrow, David G. Bourne
Software Mentions: 8
Published: over 5 years ago
10.3389/fmicb.2020.00494
A Multi-Omics Analysis Suggests Links Between the Differentiated Surface Metabolome and Epiphytic Microbiota Along the Thallus of a Mediterranean Seaweed HolobiontCited by: 27
Author(s): Benoît Paix, Nathan Carriot, Raphaëlle Barry‐Martinet, Stéphane Greff, Benjamin Misson, Jean‐François Briand, Gérald Culioli
Software Mentions: 8
Published: about 4 years ago
10.1038/s41396-020-0622-6
Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomesCited by: 35
Author(s): Bettina Glasl, Steven J. Robbins, Pedro R. Frade, Emma Marangon, Patrick W. Laffy, David G. Bourne, Nicole S. Webster
Software Mentions: 8
Published: about 4 years ago
10.1038/s41598-020-80840-x
Distinct bacterial community structure and composition along different cowpea producing ecoregions in Northeastern BrazilCited by: 7
Author(s): Luciana de Sousa Lopes, Lucas William Mendes, Jadson Emanuel Lopes Antunes, Louise Melo de Souza Oliveira, Vânia Maria Maciel Melo, Arthur Prudêncio de Araújo Pereira, Antônio Félix da Costa, José de Paula Oliveira, Cosme Rafael Martínez, Márcia do Vale Barreto Figueiredo, Ademir Sérgio Ferreira de Araújo
Software Mentions: 8
Published: over 3 years ago
10.1038/s41396-018-0279-6
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probingCited by: 228
Author(s): Roland C. Wilhelm, Rahul Singh, Lindsay D. Eltis, William W. Mohn
Software Mentions: 8
Published: over 5 years ago
10.1038/s41598-018-26332-5
Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majorityCited by: 47
Author(s): John K. Pearman, Matthieu Leray, Rodrigo Villalobos, Ryuji J. Machida, Michael L. Berumen, Nancy Knowlton, Susana Carvalho
Software Mentions: 8
Published: almost 6 years ago
10.1002/ece3.7211
Investigating the morphological and genetic divergence of arctic char ( <i>Salvelinus alpinus)</i> populations in lakes of arctic AlaskaCited by: 3
Author(s): Stephen L. Klobucar, Jessica A. Rick, Elizabeth G. Mandeville, Catherine E. Wagner, Phaedra Budy
Software Mentions: 8
Published: about 3 years ago
10.3389/fmicb.2021.584676
Microbial Community Characteristics Largely Unaffected by X-Ray Computed Tomography of Sediment CoresCited by: 0
Author(s): Erica Ewton, Scott Klasek, Erin K. Peck, J. Wiest, Frederick S. Colwell
Software Mentions: 8
Published: about 3 years ago
10.1111/mec.15484
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton ZoneCited by: 43
Author(s): Olivier Laroche, Oliver Kersten, Craig R. Smith, Erica Goetze
Software Mentions: 8
Published: almost 4 years ago
10.3389/fmicb.2021.654108
Gut Microbiota of Drosophila subobscura Contributes to Its Heat Tolerance and Is Sensitive to Transient Thermal StressCited by: 22
Author(s): Angélica Jaramillo, Luis E. Castañeda
Software Mentions: 8
Published: about 3 years ago
10.1371/journal.pone.0217804
Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeonsCited by: 12
Author(s): Kirsten Grond, Julie Perreau, Wesley T. Loo, A. James Spring, Colleen M. Cavanaugh, Sarah M. Hird
Software Mentions: 8
Published: almost 5 years ago
10.1080/19490976.2021.1966263
Deprivation of dietary fiber in specific-pathogen-free mice promotes susceptibility to the intestinal mucosal pathogen <i>Citrobacter rodentium</i>Cited by: 28
Author(s): Mareike Neumann, Alex Steimle, Erica T. Grant, Mathis Wolter, Amy Parrish, Stéphanie Willième, Dirk Brenner, Eric C. Martens, Mahesh S. Desai
Software Mentions: 8
Published: over 3 years ago
10.3390/microorganisms9020378
Differences in the Concentration of the Fecal Neurotransmitters GABA and Glutamate Are Associated with Microbial Composition among Healthy Human SubjectsCited by: 18
Author(s): Hend Altaib, Kohei Nakamura, Mayuko Abe, Yassien Badr, Emiko Yanase, Izumi Nomura, Tomohiko Suzuki
Software Mentions: 8
Published: over 3 years ago
10.1111/1365-2656.13065
Host genetics and geography influence microbiome composition in the sponge <i>Ircinia campana</i>Cited by: 48
Author(s): Sarah M. Griffiths, Rachael E. Antwis, Luca Lenzi, Anita Lucaci, Donald C. Behringer, Mark J. Butler, Richard F. Preziosi
Software Mentions: 8
Published: over 4 years ago
10.3389/fmicb.2020.555347
Dysbiosis in the Dead: Human Postmortem Microbiome Beta-Dispersion as an Indicator of Manner and Cause of DeathCited by: 22
Author(s): Sierra F. Kaszubinski, Jennifer L. Pechal, Katelyn Smiles, Carl J. Schmidt, Heather R. Jordan, Mariah H. Meek, M. Eric Benbow
Software Mentions: 8
Published: over 3 years ago
10.1128/mSystems.01356-20
Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral CommunitiesCited by: 26
Author(s): Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan, Phillip G. Popovich
Software Mentions: 8
Published: almost 3 years ago
10.1371/journal.pone.0231875
Soil fungal communities differ between shaded and sun-intensive coffee plantations in El SalvadorCited by: 10
Author(s): M. V. Rao, Robert A. Rice, Robert C. Fleischer, Carly R. Muletz‐Wolz
Software Mentions: 8
Published: about 4 years ago
10.1128/mSystems.01150-20
Distinct Community Assembly Processes of Abundant and Rare Soil Bacteria in Coastal Wetlands along an Inundation GradientCited by: 36
Author(s): Gui‐Feng Gao, Dan Peng, Binu M. Tripathi, Yihui Zhang, Haiyan Chu
Software Mentions: 8
Published: over 3 years ago
10.1002/ece3.6305
Effects of diet, habitat, and phylogeny on the fecal microbiome of wild African savanna (<i>Loxodonta africana</i>) and forest elephants (<i>L. cyclotis</i>)Cited by: 16
Author(s): Kris Budd, Joe C. Gunn, Tabitha Finch, Katy E. Klymus, Noah Sitati, Lori S. Eggert
Software Mentions: 8
Published: about 4 years ago
10.1038/s41598-021-89065-y
Exposure to airborne bacteria depends upon vertical stratification and vegetation complexityCited by: 24
Author(s): Jake M. Robinson, Christian Cando‐Dumancela, Rachael E. Antwis, Ross Cameron, Craig Liddicoat, Ravin Poudel, Philip Weinstein, Martin F. Breed
Software Mentions: 8
Published: about 3 years ago
10.1007/s00125-019-4848-7
Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention studyCited by: 117
Author(s): Thomas Bryrup, Cæcilie W. Thomsen, Timo Kern, Kristine H. Allin, Ivan Brandslund, Niklas Rye Jørgensen, Henrik Vestergaard, Torben Hansen, Oluf Pedersen, Trine Nielsen
Software Mentions: 8
Published: about 5 years ago
10.1038/s41598-019-55706-6
Tailings microbial community profile and prediction of its functionality in basins of tungsten mineCited by: 26
Author(s): Ana Paula Chung, Carina Coimbra, Pedro Farias, Romeu Francisco, Rita Branco, Francisco Veiga Simão, Érico Rodrigues Gomes, Alcides Pereira, Maria Cristina Vila, António Fiúza, Martin Steen Mortensen, Søren J. Sørensen, Paula V. Morais
Software Mentions: 8
Published: over 4 years ago
10.3390/nu13093295
Associations between Maternal Diet, Body Composition and Gut Microbial Ecology in PregnancyCited by: 14
Author(s): Meghan L. Ruebel, Stephanie Gilley, Clark Sims, Ying Zhang, Donald Turner, Sree V. Chintapalli, Brian D. Piccolo, Aline Andres, Kartik Shankar
Software Mentions: 8
Published: over 2 years ago
10.1038/s41598-021-92913-6
Ganoderma lucidum promotes sleep through a gut microbiota-dependent and serotonin-involved pathway in miceCited by: 14
Author(s): Chunyan Yao, Zhiyuan Wang, Huiyong Jiang, Yan Ren, Qin Huang, Yin Wang, Hui Xie, Ying Zou, Ying Yu, Longxian Lv
Software Mentions: 8
Published: almost 3 years ago
10.1038/s41598-020-57622-6
Mainland and island populations of Mussaenda kwangtungensis differ in their phyllosphere fungal community composition and network structureCited by: 16
Author(s): Xin Qian, Shengchun Li, Bian Wu, Yong-Long Wang, Niu‐Niu Ji, Hui Yao, Hongyue Cai, Miaomiao Shi, Dianxiang Zhang
Software Mentions: 8
Published: over 4 years ago
10.3389/fmicb.2021.728479
Cross-Sectional Study on the Gut Microbiome of Parkinson’s Disease Patients in Central ChinaCited by: 11
Author(s): Liangwei Mao, Yu Zhang, Jing Tian, Ming Sang, Guimin Zhang, Yiming Zhou, Puqing Wang
Software Mentions: 8
Published: over 2 years ago
10.1128/mBio.00637-18
How, When, and Where Relic DNA Affects Microbial DiversityCited by: 114
Author(s): Jay T. Lennon, Mario E. Muscarella, Sarah A. Placella, Brent K Lehmkuhl
Software Mentions: 8
Published: almost 6 years ago
10.3389/fpls.2020.601975
Flower Diversification Across “Pollinator Climates”: Sensory Aspects of Corolla Color Evolution in the Florally Diverse South American Genus Jaborosa (Solanaceae)Cited by: 9
Author(s): Marcela Moré, Ana C. Ibañez, María Eugenia Drewniak, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: over 3 years ago
10.3390/toxins13080583
Metaproteomics Reveals Alteration of the Gut Microbiome in Weaned Piglets Due to the Ingestion of the Mycotoxins Deoxynivalenol and ZearalenoneCited by: 6
Author(s): Johan S. Sáenz, Alina Kurz, Ursula Ruczizka, Moritz Bünger, Maximiliane Dippel, Veronika Nagl, Bertrand Grenier, Andrea Ladinig, Jana Seifert, Evelyne Selberherr
Software Mentions: 8
Published: over 2 years ago
10.3389/fpls.2017.00930
The Influence of Land Use Intensity on the Plant-Associated Microbiome of Dactylis glomerata L.Cited by: 44
Author(s): Jennifer Estendorfer, Barbara Stempfhuber, Paula Haury, Gisle Vestergaard, Matthias C. Rillig, Jasmin Joshi, Peter Schröder, Michael Schloter
Software Mentions: 8
Published: almost 7 years ago
10.1007/s00300-021-02823-6
Seasonal dynamics of meroplankton in a sub-Antarctic fjord (Southern Patagonia, Chile)Cited by: 1
Author(s): Santiago E A Pineda-Metz, Américo Montiel
Software Mentions: 8
Published: about 3 years ago
10.1038/s41598-021-96160-7
Wolves, dogs and humans in regular contact can mutually impact each other’s skin microbiotaCited by: 6
Author(s): Stefanie U. Wetzels, Cameron Strachan, Beate Conrady, Martin Wagner, Iwan Burgener, Zsófia Virányi, Evelyne Selberherr
Software Mentions: 8
Published: over 2 years ago
10.1002/ece3.7579
Molecular diet analysis of neotropical bats based on fecal DNA metabarcodingCited by: 36
Author(s): Melissa R. Ingala, Nancy B. Simmons, Claudia Wultsch, Konstantinos Krampis, Kaiya L. Provost, Susan L. Perkins
Software Mentions: 8
Published: about 3 years ago
10.3390/plants10081512
Floral Scent Evolution in the Genus Jaborosa (Solanaceae): Influence of Ecological and Environmental FactorsCited by: 6
Author(s): Marcela Moré, Florencia Soteras, Ana C. Ibañez, Stefan Dötterl, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: almost 3 years ago
10.1371/journal.pone.0209200
Effects of urbanization on the foraging ecology and microbiota of the generalist seabird Larus argentatusCited by: 61
Author(s): Matthew Fuirst, Richard R. Veit, Megan Hahn, Nolwenn M. Dheilly, Lesley H. Thorne
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0187758
Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forestCited by: 20
Author(s): Fatima Zahra Maghnia, Younes Abbas, Frédéric Mahe, Benaissa Kerdouh, Estelle Tournier, Mohamed Ouadji, Pierre Tisseyre, Yves Prin, Naïma El Ghachtouli, Salah Eddine Bakkali Yakhlef, Robin Duponnois, Hervé Sanguin
Software Mentions: 8
Published: over 6 years ago
10.1038/s41598-021-99046-w
Using fecal immunochemical tubes for the analysis of the gut microbiome has the potential to improve colorectal cancer screeningCited by: 7
Author(s): Kertu Liis Krigul, Oliver Aasmets, Kreete Lüll, Tõnis Org, Elin Org
Software Mentions: 8
Published: over 2 years ago
10.7717/peerj.1356
Urban habitat complexity affects species richness but not environmental filtering of morphologically-diverse antsCited by: 22
Author(s): Alessandro Ossola, M. Nash, Fiona J. Christie, Amy K. Hahs, Stephen J. Livesley
Software Mentions: 8
Published: over 8 years ago
10.1002/ece3.6913
Changes in beta diversity and species functional traits differ between saplings and mature trees in an old‐growth forestCited by: 1
Author(s): David Anthony Kirk, Marie‐Hélène Brice, Michael S. W. Bradstreet, Ken A. Elliott
Software Mentions: 8
Published: over 3 years ago
10.1002/ece3.5289
Disturbance history mediates climate change effects on subtropical forest biomass and dynamicsCited by: 16
Author(s): Alexandre F. Souza, Solon Jonas Longhi
Software Mentions: 8
Published: almost 5 years ago
10.3389/fmicb.2020.00789
Unraveling the Diversity of Eukaryotic Microplankton in a Large and Deep Perialpine Lake Using a High Throughput Sequencing ApproachCited by: 18
Author(s): Nico Salmaso, Bruno Adriano, Massimo Pindo
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-021-93918-x
Probiotic supplementation reduces inflammatory profiles but does not prevent oral immune perturbations during SIV infectionCited by: 4
Author(s): Rhianna Jones, Kyle Kroll, Courtney Broedlow, Luca Schifanella, Scott Smith, Brady Hueber, Spandan V. Shah, Daniel R. Ram, Cordelia Manickam, Valerie Varner, Nichole R. Klatt, R. Keith Reeves
Software Mentions: 7
Published: almost 3 years ago
10.1038/s41598-020-60575-5
Dung beetles response to livestock management in three different regional contextsCited by: 8
Author(s): Celeste Beatriz Guerra Alonso, Gustavo A. Zurita, M. Isabel Bellocq
Software Mentions: 7
Published: about 4 years ago
10.1186/s40851-021-00176-w
Integrative taxonomy resolves species identities within the Macrobiotus pallarii complex (Eutardigrada: Macrobiotidae)Cited by: 18
Author(s): Daniel Stec, Matteo Vecchi, Magdalena Dudziak, Paul Bartels, Sara Calhim, Łukasz Michalczyk
Software Mentions: 7
Published: almost 3 years ago
10.1098/rsos.170073
Predictors and immunological correlates of sublethal mercury exposure in vampire batsCited by: 44
Author(s): Daniel J. Becker, Matthew M. Chumchal, Alexandra B. Bentz, Steven G. Platt, Gábor Á. Czirják, Thomas R. Rainwater, Sonia Altizer, Daniel G. Streicker
Software Mentions: 7
Published: about 7 years ago
10.1371/journal.pone.0200729
The murine female intestinal microbiota does not shift throughout the estrous cycleCited by: 18
Author(s): Jessica G. Wallace, Ryan Potts, Jake C. Szamosi, Michael G. Surette, Deborah M. Sloboda
Software Mentions: 7
Published: almost 6 years ago
10.1371/journal.pone.0229146
Vegetation changes in temperate ombrotrophic peatlands over a 35 year periodCited by: 20
Author(s): Nicolas Pinceloup, Monique Poulin, Marie‐Hélène Brice, Stéphanie Pellerin
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pbio.2004108
Rapid environmental effects on gut nematode susceptibility in rewilded miceCited by: 94
Author(s): Jacqueline M. Leung, Sarah A. Budischak, Hao Chung The, Christina Hansen, Rowann Bowcutt, Rebecca Neill, Mitchell Shellman, P’ng Loke, Andrea L. Graham
Software Mentions: 7
Published: about 6 years ago
10.3389/fpls.2020.602645
Bradyrhizobium as the Only Rhizobial Inhabitant of Mung Bean (Vigna radiata) Nodules in Tropical Soils: A Strategy Based on Microbiome for Improving Biological Nitrogen Fixation Using Bio-ProductsCited by: 11
Author(s): Vinício Oliosi Favero, Rita Hilário de Carvalho, Victória Monteiro da Motta, Ana Beatriz Carneiro Leite, Márcia Reed Rodrigues Coelho, Gustavo Ribeiro Xavier, Norma Gouvêa Rumjanek, Segundo Urquiaga
Software Mentions: 7
Published: over 3 years ago
10.1016/j.jprot.2018.08.013
Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growthCited by: 29
Author(s): Dwight R. Causey, Jin-Hyoung Kim, David Stead, Samuel Martín, Robert H. Devlin, Daniel J. Macqueen
Software Mentions: 7
Published: over 5 years ago
10.1007/s00572-020-01001-6
Phosphate availability and ectomycorrhizal symbiosis with Pinus sylvestris have independent effects on the Paxillus involutus transcriptomeCited by: 6
Author(s): Christina Paparokidou, Jonathan R. Leake, David J. Beerling, Stephen A. Rolfe
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-021-96967-4
Parasites and diet as main drivers of the Malagasy gut microbiome richness and functionCited by: 3
Author(s): Stanislas Mondot, Philippe Poirier, Ahmed Abou-Bacar, Valentin Greigert, Julie Brunet, Céline Nourrisson, Milijaona Randrianarivelojosia, Jean-Louis Razafindrakoto, Eugène Morel, Rivo Rakotomalala, Marion Leclerc, Karine Le Roux, Céline Monot, Patricia Lepage, Ermanno Candolfi
Software Mentions: 7
Published: over 2 years ago
10.3390/pathogens10010066
Contamination Sources and Transmission Routes for Campylobacter on (Mixed) Broiler Farms in Belgium, and Comparison of the Gut Microbiota of Flocks Colonized and Uncolonized with CampylobacterCited by: 8
Author(s): Karolien Hertogs, Annelies Haegeman, Dries Schaumont, Philippe Gelaude, Lieven De Zutter, Jeroen Dewulf, Marc Heyndrickx, Geertrui Rasschaert
Software Mentions: 7
Published: over 3 years ago