cran: FactoMineR | Projects | Ecosyste.ms: Papers

10.1002/pmic.201400392

Visualization of proteomics data using R and Bioconductor
Cited by: 46
Author(s): Laurent Gatto, Lisa M. Breckels, Thomas Naake, Sebastian Gibb
Software Mentions: 62
Published: over 9 years ago

mixOmics: An R package for ‘omics feature selection and multiple data integration
Cited by: 1,902
Author(s): Florian Rohart, Benoît Gautier, Amrit Singh, Kim‐Anh Lê Cao
Software Mentions: 29
Published: about 7 years ago

10.3389/fimmu.2021.659444

Development and Validation of a CD8+ T Cell Infiltration-Related Signature for Melanoma Patients
Cited by: 13
Author(s): Yuan Yuan, Zheng Zhu, Ying Lan, Saili Duan, Zijue Zhu, Xi Zhang, Guoyin Li, Hui Qü, Yao Feng, Hui Cai, Zewen Song
Software Mentions: 24
Published: over 3 years ago

10.1186/s13072-016-0095-z

EpiMINE, a computational program for mining epigenomic data
Cited by: 11
Author(s): Sri Ganesh Jammula, Diego Pasini
Software Mentions: 23
Published: about 8 years ago

10.3389/fmicb.2020.550420

Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline
Cited by: 91
Author(s): Daniel Straub, Nia Blackwell, Adrian Langarica‐Fuentes, Alexander Peltzer, Sven Nahnsen, Sara Kleindienst
Software Mentions: 22
Published: about 4 years ago

10.1186/1756-0500-3-277

EMA - A R package for Easy Microarray data analysis
Cited by: 45
Author(s): Nicolas Servant, Eléonore Gravier, Pierre Gestraud, Cécile Laurent, Caroline Paccard, Anne Biton, Isabel Martínez Brito, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupé
Software Mentions: 20
Published: about 14 years ago

10.18632/aging.203108

Cognitive dedifferentiation as a function of cognitive impairment in the ADNI and MemClin cohorts
Cited by: 2
Author(s): John Wallert, Anna Rennie, Daniel Ferreira, J‐Sebastian Muehlboeck, Lars‐Olof Wahlund, Eric Westman, Urban Ekman
Software Mentions: 20
Published: over 3 years ago

10.1371/journal.pntd.0005121

Seasonal and Spatial Environmental Influence on Opisthorchis viverrini Intermediate Hosts, Abundance, and Distribution: Insights on Transmission Dynamics and Sustainable Control
Cited by: 20
Author(s): Christina Sunyoung Kim, Pierre Echaubard, Apiporn Suwannatrai, Sasithorn Kaewkes, Bruce A. Wilcox, Banchob Sripa
Software Mentions: 19
Published: almost 8 years ago

10.3389/fonc.2021.646267

Exploring MRI Characteristics of Brain Diffuse Midline Gliomas With the H3 K27M Mutation Using Radiomics
Cited by: 13
Author(s): Qian Li, Fei Dong, Biao Jiang, Minming Zhang
Software Mentions: 18
Published: over 3 years ago

10.3390/brainsci11081017

Facial Signals and Social Actions in Multimodal Face-to-Face Interaction
Cited by: 14
Author(s): Naomi Nota, James P. Trujillo, Judith Holler
Software Mentions: 17
Published: over 3 years ago

10.1038/s41419-021-03909-z

Diagnostic and prognostic potential of the proteomic profiling of serum-derived extracellular vesicles in prostate cancer
Cited by: 14
Author(s): Michele Signore, Romina Alfonsi, Giulia Federici, Simona Nanni, Antonio Addario, Lucia Bertuccini, Aurora Aiello, Anna Pace, Isabella Sperduti, Giovanni Muto, Alessandro Giacobbe, Devis Collura, Lidia Brunetto, Giuseppe Simone, Manuela Costantini, Lucio Crinò, Stefania Rossi, Claudio Tabolacci, Marco Diociaiuti, Tania Merlino, Michele Gallucci, Steno Sentinelli, Rocco Papalia, Ruggero De Maria, Dèsirèe Bonci
Software Mentions: 16
Published: over 3 years ago

10.7554/eLife.61812

Reproducible analysis of disease space via principal components using the novel R package syndRomics
Cited by: 18
Author(s): Abel Torres-Espín, Austin Chou, J. Russell Huie, Nikos Kyritsis, Pavan S. Upadhyayula, Adam R. Ferguson
Software Mentions: 16
Published: almost 4 years ago

10.1038/s41598-021-81583-z

Foraging niche partitioning in sympatric seabird populations
Cited by: 11
Author(s): Christina Petalas, Thomas Lazarus, Richard Lavoie, Kyle H. Elliott, Mélanie F. Guigueno
Software Mentions: 16
Published: almost 4 years ago

10.3389/fimmu.2020.572924

Differential Skewing of Circulating MR1-Restricted and γδ T Cells in Human Psoriasis Vulgaris
Cited by: 7
Author(s): Vera Plužarić, Mario Štefanić, Martina Mihalj, Maja Tolušić Levak, Ivanka Muršić, Ljubica Glavaš‐Obrovac, Martin Petřek, Péter Balogh, Stana Tokić
Software Mentions: 14
Published: almost 4 years ago

10.1186/s12967-021-02894-3

Identification of immune subtypes of cervical squamous cell carcinoma predicting prognosis and immunotherapy responses
Cited by: 8
Author(s): Yimin Li, Shun Lü, Shubin Wang, Xinhao Peng, Jinyi Lang
Software Mentions: 14
Published: over 3 years ago

10.1038/s41598-020-59849-9

Response of the human gut and saliva microbiome to urbanization in Cameroon
Cited by: 25
Author(s): Ana Lokmer, Sophie Aflalo, Norbert Amougou, Sophie Lafosse, Alain Froment, Francis Ekwin Tabe, Mathilde Poyet, Mathieu Groussin, Rihlat Saïd-Mohamed, Laure Ségurel
Software Mentions: 14
Published: almost 5 years ago

10.1016/j.xpro.2021.100837

Protocol for hybrid flux balance, statistical, and machine learning analysis of multi-omic data from the cyanobacterium Synechococcus sp. PCC 7002
Cited by: 3
Author(s): Supreeta Vijayakumar, Claudio Angione
Software Mentions: 13
Published: almost 3 years ago

10.3390/cancers13174311

Landscape of Bone Marrow Metastasis in Human Neuroblastoma Unraveled by Transcriptomics and Deep Multiplex Imaging
Cited by: 15
Author(s): Daria Lazic, Florian Kromp, Fikret Rifatbegovic, Peter Repiščák, Michael Kirr, Filip Mívalt, Florian Halbritter, Marie Bernkopf, Andrea Bileck, Marek Ussowicz, Inge M. Ambros, Peter F. Ambros, Christopher Gerner, Ruth Ladenstein, Christian Ostalecki, Sabine Taschner‐Mandl
Software Mentions: 13
Published: about 3 years ago

10.1186/1471-2164-14-46

Systems infection biology: a compartmentalized immune network of pig spleen challenged with Haemophilus parasuis
Cited by: 9
Author(s): Ming Zhao, Xiangdong Liu, Xinyun Li, Hongbo Chen, Hui Jin, Rui Zhou, Mengjin Zhu, Shuhong Zhao
Software Mentions: 13
Published: almost 12 years ago

10.3389/fmicb.2021.689262

Monitoring of Antimicrobial Resistance to Aminoglycosides and Macrolides in Campylobacter coli and Campylobacter jejuni From Healthy Livestock in Spain (2002–2018)
Cited by: 9
Author(s): Vicente Lopez-Chavarrias, María Ugarte‐Ruiz, Carmen Bárcena, Adolfo Olarra, María Teresa Antonio García, José Luís Saez, Cristina de Frutos, Tania Serrano, I. Abad Perez, M. Moreno, Lucas Domı́nguez, Julio Álvarez
Software Mentions: 13
Published: over 3 years ago

10.7554/eLife.67784

Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe
Cited by: 26
Author(s): Ella Katz, Jiajie Li, Benjamin Jaegle, Haim Ashkenazy, R. Shawn Abrahams, Clement Bagaza, Samuel Holden, Chris J Pires, Ruthie Angelovici, Daniel J. Kliebenstein
Software Mentions: 13
Published: over 3 years ago

10.18632/aging.202831

Seven interferon gamma response genes serve as a prognostic risk signature that correlates with immune infiltration in lung adenocarcinoma
Cited by: 11
Author(s): Boyang Yao, Lixin Wang, Heyong Wang, Jinxia Bao, Qiwen Li, Fengzhi Yu, Wenjing Zhu, Li Zhang, Wang Li, Gu Zhan, Ke Fei, Peng Zhang, Fan Zhang, Xiaoying Huang
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0219698

Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns
Cited by: 11
Author(s): Alexander Platzer, Thomas Nußbaumer, Thomas Karonitsch, Josef S. Smolen, Daniel Aletaha
Software Mentions: 12
Published: over 5 years ago

10.1186/s13567-021-00981-3

Immunogenicity and protective efficacy of a Streptococcus suis vaccine composed of six conserved immunogens
Cited by: 8
Author(s): Christine Weiße, Denise Dittmar, Beata Jakóbczak, Volker Florian, Nicole Schütze, Gottfried Alber, Kristin Klose, Stephan Michalik, Peter Valentin‐Weigand, Uwe Völker, Christoph Georg Baums
Software Mentions: 12
Published: about 3 years ago

10.3389/fmed.2021.644724

Exploring the Clinical Characteristics of COVID-19 Clusters Identified Using Factor Analysis of Mixed Data-Based Cluster Analysis
Cited by: 10
Author(s): Han Liang, Pan Shen, Jiahui Yan, Yao Huang, Xin Ba, Wei Chen Lin, Hui Wang, Ying Huang, Kai Qin, Yu Wei, Zhe Chen, Shenghao Tu
Software Mentions: 12
Published: over 3 years ago

10.7554/eLife.38579

FoxA1 and FoxA2 drive gastric differentiation and suppress squamous identity in NKX2-1-negative lung cancer
Cited by: 52
Author(s): Soledad A. Camolotto, S. R. Pattabiraman, Timothy Mosbruger, Alex Jones, Veronika K Belova, Grace Orstad, Mitchell Streiff, Lydia Salmond, Chris Stubben, Klaus H. Kaestner, Eric L. Snyder
Software Mentions: 12
Published: almost 6 years ago

10.3390/biom11020338

Fungal X-Intrinsic Protein Aquaporin from Trichoderma atroviride: Structural and Functional Considerations
Cited by: 1
Author(s): Maroua Ben Amira, Mohamed Faize, Magnus Karlsson, Mukesh Dubey, Magdalena Frąc, Jacek Panek, Boris Fumanal, Aurélie Gousset-Dupont, Jean-Louis Julien, Hatem Chaar, Daniel Auguin, Robin Mom, Philippe Label, Jean-Stéphane Venisse
Software Mentions: 12
Published: over 3 years ago

10.3389/fimmu.2021.647832

Large-Scale Gene Expression Signatures Reveal a Microbicidal Pattern of Activation in Mycobacterium leprae-Infected Monocyte-Derived Macrophages With Low Multiplicity of Infection
Cited by: 9
Author(s): Thyago Leal-Calvo, Bruna Letícia Martins, Daniele Ferreira de Faria Bertoluci, Patrícia Sammarco Rosa, Rodrigo Mendes de Camargo, G. Germano, Vânia Niéto Brito de Souza, Ana Carla Pereira Latini, Milton Ozório Moraes
Software Mentions: 12
Published: over 3 years ago

10.3390/plants10050879

Multivariate Analysis of Morpho-Physiological Traits Reveals Differential Drought Tolerance Potential of Bread Wheat Genotypes at the Seedling Stage
Cited by: 26
Author(s): Mohammed Mohi-Ud-Din, Md. Alamgir Hossain, Md. Motiar Rohman, Md. Nesar Uddin, Md. Sabibul Haque, Jalal Uddin Ahmed, Akbar Hossain, Mohamed M. Hassan, Mohammad Golam Mostofa
Software Mentions: 12
Published: over 3 years ago

10.3389/fgene.2020.00906

Construction and Validation of Novel Diagnostic and Prognostic DNA Methylation Signatures for Hepatocellular Carcinoma
Cited by: 7
Author(s): Ran Li, Liyan Shui, Junling Jia, Chao Wu
Software Mentions: 12
Published: over 4 years ago

10.1002/ece3.6044

Variation of chemical compounds in wild Heliconiini reveals ecological factors involved in the evolution of chemical defenses in mimetic butterflies
Cited by: 21
Author(s): Ombeline Sculfort, Érika Cristina Pinheiro de Castro, Krzysztof M. Kozak, Søren Bak, Marianne Élias, Bastien Nay, Violaine Llaurens
Software Mentions: 11
Published: almost 5 years ago

10.3389/fphys.2020.00845

Dynamic Courtship Signals and Mate Preferences in Sepia plangon
Cited by: 5
Author(s): Alejandra López Galán, Wen-Sung Chung, N. Justin Marshall
Software Mentions: 11
Published: over 4 years ago

10.3389/fpls.2020.599228

Hormopriming to Mitigate Abiotic Stress Effects: A Case Study of N9-Substituted Cytokinin Derivatives With a Fluorinated Carbohydrate Moiety
Cited by: 17
Author(s): Magdaléna Bryksová, Andrea Hybenová, Alba E. Hernándiz, Ondřej Novák, Aleš Pěnčík, Lukáš Spíchal, Nuria De Diego, Karel Doležal
Software Mentions: 11
Published: almost 4 years ago

10.3390/jcm10184245

Machine-Learning Points at Endoscopic, Quality of Life, and Olfactory Parameters as Outcome Criteria for Endoscopic Paranasal Sinus Surgery in Chronic Rhinosinusitis
Cited by: 4
Author(s): Jörn Lötsch, Constantin A. Hintschich, Petros Petridis, Jürgen Pade, Thomas Hummel
Software Mentions: 11
Published: about 3 years ago

10.3390/ijms22147269

Genome-Wide Identification, Structure Characterization, and Expression Pattern Profiling of the Aquaporin Gene Family in Betula pendula
Cited by: 3
Author(s): Jean-Stéphane Venisse, Eele Õunapuu-Pikas, Maxime Dupont, Aurélie Gousset-Dupont, Mouadh Saadaoui, Mohamed Faize, Song Chen, Su Chen, Gilles Pétel, Boris Fumanal, Patricia Roeckel‐Drevet, Arne Sellin, Philippe Label
Software Mentions: 11
Published: over 3 years ago

10.1371/journal.pbio.2005396

Gut microbiome transition across a lifestyle gradient in Himalaya
Cited by: 109
Author(s): Aashish R. Jha, Emily Davenport, Yoshina Gautam, Dinesh Bhandari, Sarmila Tandukar, Katharine M. Ng, Gabriela K. Fragiadakis, Susan Holmes, Guru Prasad Gautam, Jeff D. Leach, Jeevan Bahadur Sherchand, Carlos D. Bustamante, Justin L. Sonnenburg
Software Mentions: 10
Published: about 6 years ago

10.1371/journal.pone.0224947

Does caching strategy vary with microclimate in endangered Mt. Graham red squirrels?
Cited by: 1
Author(s): Calebe P. Mendes, John L. Koprowski
Software Mentions: 10
Published: about 5 years ago

10.1007/s00401-020-02224-9

Altered DNA methylation profiles in blood from patients with sporadic Creutzfeldt–Jakob disease
Cited by: 14
Author(s): Luke C. Dabin, Fernando Guntoro, Tracy Campbell, Tony Bélicard, Adam R. Smith, Rebecca G. Smith, Rachel Raybould, Jonathan M. Schott, Katie Lunnon, Peter Sarkies, John Collinge, Simon Mead, Emmanuelle Viré
Software Mentions: 10
Published: about 4 years ago

10.1038/s42003-019-0646-5

Histone acetylation orchestrates wound-induced transcriptional activation and cellular reprogramming in Arabidopsis
Cited by: 59
Author(s): Bart Rymen, Ayako Kawamura, Alice Lambolez, Soichi Inagaki, Arika Takebayashi, Akira Iwase, Yuki Sakamoto, Kaori Sako, David S. Favero, Momoko Ikeuchi, Takamasa Suzuki, Masanori Seki, Tetsuji Kakutani, François Roudier, Keiko Sugimoto
Software Mentions: 10
Published: about 5 years ago

10.1038/s41598-020-74909-w

Multi-strain volatile profiling of pathogenic and commensal cutaneous bacteria
Cited by: 19
Author(s): Shane Fitzgerald, Emer Duffy, Linda Holland, Aoife Morrin
Software Mentions: 10
Published: about 4 years ago

10.1038/s41598-020-76103-4

Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
Cited by: 3
Author(s): Dèdéou Apocalypse Tchokponhoué, Enoch G. Achigan‐Dako, Sognigbé N’Danikou, Daniel Nyadanu, Rémi Kahane, Jacob S Houéto, V.N. Fassinou Hotegni, Alfred Odindo, Julia Sibiya
Software Mentions: 10
Published: about 4 years ago

10.1186/s13046-019-1212-1

The kinase inhibitor SI113 induces autophagy and synergizes with quinacrine in hindering the growth of human glioblastoma multiforme cells
Cited by: 23
Author(s): Silvia Matteoni, Claudia Abbruzzese, Paola Matarrese, Gabriele De Luca, Anna Maria Mileo, Stefania Miccadei, Silvia Schenone, Francesca Musumeci, Tobias Haas, Giovanni Sette, Carmine Maria Carapella, Rosario Amato, Nicola Perrotti, Michele Signore, Marco G. Paggi
Software Mentions: 10
Published: over 5 years ago

10.3389/fonc.2020.00973

Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data
Cited by: 8
Author(s): Lauren Hsu, Aedín C. Culhane
Software Mentions: 10
Published: over 4 years ago

10.1002/ece3.7563

The interaction of resource use and gene flow on the phenotypic divergence of benthic and pelagic morphs of Icelandic Arctic charr (Salvelinus alpinus)
Cited by: 10
Author(s): Matthew K. Brachmann, Kevin J. Parsons, Skúli Skúlason, Moira M. Ferguson
Software Mentions: 10
Published: over 3 years ago

10.7554/eLife.18683

Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development
Cited by: 185
Author(s): Felipe Mora‐Bermúdez, Farhath Badsha, Sabina Kanton, J. Gray Camp, Benjamin Vernot, Kathrin Köhler, Birger Voigt, Keisuke Okita, Tomislav Maričić, Zhisong He, Robert Lachmann, Svante Pääbo, Barbara Treutlein, Wieland B. Huttner
Software Mentions: 10
Published: about 8 years ago

10.1371/journal.pone.0249858

Morpho-agronomic, biochemical and molecular analysis of genetic diversity in the Mesoamerican common bean panel
Cited by: 5
Author(s): Alexandre Simões Nogueira, Vânia Moda-Cirino, Jéssica Delfini, Luriam Aparecida Brandão, Silas Mian, Leonel Vinícius Constantino, Douglas Mariani Zeffa, José dos Santos Neto, Leandro Simões Azeredo Gonçalves
Software Mentions: 9
Published: over 3 years ago

10.7717/peerj.6127

Bacterial and archaeal spatial distribution and its environmental drivers in an extremely haloalkaline soil at the landscape scale
Cited by: 8
Author(s): Martha Adriana Martínez-Olivas, Norma G. Jiménez‐Bueno, Juan Alfredo Hernández-García, Carmine Fusaro, Marco Luna‐Guido, Yendi E. Navarro‐Noya, Luc Dendooven
Software Mentions: 9
Published: over 5 years ago

10.1128/mBio.01527-20

A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates
Cited by: 11
Author(s): Nathan B. Pincus, Egon A. Ozer, Jonathan P. Allen, M. Nguyen, James J. Davis, Deborah R. Winter, Chih Hsien Chuang, Cheng-Hsun Chiu, Laura Zamorano, Antonio Oliver, Alan R. Hauser
Software Mentions: 9
Published: about 4 years ago

10.3389/fvets.2021.627894

Factors Affecting the Development of Bovine Respiratory Disease: A Cross-Sectional Study in Beef Steers Shipped From France to Italy
Cited by: 14
Author(s): Barbara Padalino, Francesco Cirone, Martina Zappaterra, Daniele Tullio, Gigliola Ficco, Antonio Giustino, Linda Amarachi Ndiana, Annamaria Pratelli
Software Mentions: 9
Published: over 3 years ago

10.1186/s13073-015-0225-4

Many obesity-associated SNPs strongly associate with DNA methylation changes at proximal promoters and enhancers
Cited by: 104
Author(s): Sarah Voisin, Markus Sällman Almén, Galina Yurevna Zheleznyakova, Lina Lundberg, Sanaz Zarei, Sandra Castillo, Fia Ence Eriksson, Emil Nilsson, Matthias Blüher, Yvonne Böttcher, Peter Kovacs, Jānis Kloviņš, Mathias Rask‐Andersen, Helgi B. Schiöth
Software Mentions: 9
Published: about 9 years ago

10.3390/ijerph17134698

Spatio-Temporal Dynamic of Malaria Incidence: A Comparison of Two Ecological Zones in Mali
Cited by: 7
Author(s): François Freddy Ateba, Issaka Sagara, Nafomon Sogoba, Mahamoudou Touré, Drissa Konaté, Sory Ibrahim Diawara, Seidina A. S. Diakité, Ayouba Diarra, Massa Coulibaly, Mathias Dolo, Amagana Dolo, Adama Sacko, Sidibé M’Baye Thiam, Aliou Sissako, Lansana Sangaré, Mahamadou Diakité, Ousmane Koïta, Mady Cissoko, Sékou F. Traorè, Peter J. Winch, Manuel Febrero–Bande, Jeffrey G. Shaffer, Donald J. Krogtad, Hannah C. Marker, Jean Gaudart
Software Mentions: 9
Published: over 4 years ago

10.1002/ece3.5927

Islands in the desert for cavity‐nesting bees and wasps: Ecology, patterns of diversity, and conservation at oases of Baja California Peninsula
Cited by: 4
Author(s): Armando Falcón‐Brindis, María Luisa Jiménez, Ricardo Rodríguez‐Estrella
Software Mentions: 9
Published: almost 5 years ago

10.3389/fpls.2018.01673

Genetic and Pathogenicity Diversity of Aphanomyces euteiches Populations From Pea-Growing Regions in France
Cited by: 19
Author(s): Anne Quillévéré‐Hamard, Gwenola Le Roy, Anne Moussart, Alain Baranger, Didier Andrivon, Marie‐Laure Pilet‐Nayel, Christophe Le May
Software Mentions: 9
Published: about 6 years ago

10.1038/s41598-020-77201-z

An improved de novo assembling and polishing of Solea senegalensis transcriptome shed light on retinoic acid signalling in larvae
Cited by: 3
Author(s): José Córdoba-Caballero, Pedro Seoane, Fernando M. Jabato, James R. Perkins, Manuel Manchado, M. Gonzalo Claros
Software Mentions: 9
Published: almost 4 years ago

10.1242/dev.158501

Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human preimplantation epiblast
Cited by: 143
Author(s): Giuliano Giuseppe Stirparo, Thorsten Boroviak, Ge Guo, Jennifer Nichols, Austin Smith, Paul Bertone
Software Mentions: 9
Published: almost 7 years ago

10.1038/s41422-021-00562-1

Distinct immune signatures discriminate between asymptomatic and presymptomatic SARS-CoV-2pos subjects
Cited by: 8
Author(s): Shanhe Yu, Caixia Di, Shijun Chen, Mingquan Guo, Jiayang Yan, Zhaoqin Zhu, Li Liu, Rilu Feng, Yinyin Xie, Ruihong Zhang, Juan Chen, Mengxi Wang, Dong Wei, Hai Fang, Tong Yin, Jinyan Huang, Sai‐Juan Chen, Hongzhou Lu, Jiang Zhu, Jieming Qu
Software Mentions: 9
Published: about 3 years ago

10.1038/s41598-019-53903-x

Proteome characterization of used nesting material and potential protein sources from group housed male mice, Mus musculus
Cited by: 16
Author(s): Amanda J. Barabas, Uma K. Aryal, Brianna N. Gaskill
Software Mentions: 9
Published: almost 5 years ago

10.1186/s40168-020-00887-w

Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate
Cited by: 73
Author(s): Nguyen K. Nguyen, Edward C. Deehan, Zhengxiao Zhang, Mingliang Jin, Nami Baskota, María Elisa Pérez-Muñoz, Janis Cole, Yunus E. Tunçil, Benjamin Seethaler, Ting Wang, Martine Laville, Nathalie M. Delzenne, Stephan C. Bischoff, Bruce R. Hamaker, Inés Martínez, Dan Knights, Jeffrey A. Bakal, Carla M. Prado, Jens Walter
Software Mentions: 9
Published: over 4 years ago

10.1038/s41419-019-1775-y

A new bioavailable fenretinide formulation with antiproliferative, antimetabolic, and cytotoxic effects on solid tumors
Cited by: 34
Author(s): Isabella Orienti, Federica Francescangeli, Maria Laura De Angelis, Katia Fecchi, Lucilla Bongiorno-Borbone, Michele Signore, Angelo Peschiaroli, Alessandra Boe, Alessandro Bruselles, Angelita Costantino, Adriana Eramo, Valentina Salvati, Giovanni Sette, Paola Contavalli, Lello Zolla, Toshihiko Oki, Toshio Kitamura, Massimo Spada, Alessandro Giuliani, Marta Baiocchi, Filippo La Torre, Gerry Melino, Marco Tartaglia, Ruggero De Maria, Ann Zeuner
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0172278

Combined bio-logging and stable isotopes reveal individual specialisations in a benthic coastal seabird, the Kerguelen shag
Cited by: 16
Author(s): Elodie C. M. Camprasse, Yves Cherel, John P. Y. Arnould, Andrew J. Hoskins, Charles‐André Bost
Software Mentions: 9
Published: over 7 years ago

10.1038/s41598-021-95185-2

The food patterns of a multicenter cohort of Brazilian nulliparous pregnant women
Cited by: 3
Author(s): Maria J Miele, Renato Teixeira Souza, Iracema de Mattos Paranhos Calderon, Francisco Edson de Lucena Feitosa, Débora Farias Batista Leite, Edilberto A. Rocha Filho, Janete Vettorazzi, Jussara Mayrink, Karayna Gil Fernandes, Matias C. Vieira, Rodolfo C. Pacagnella, José Guilherme Cecatti
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0212024

Spatial and temporal development of deltamethrin resistance in malaria vectors of the Anopheles gambiae complex from North Cameroon
Cited by: 23
Author(s): Stanislas Mandeng, Herman Parfait Awono-Ambene, Jude D. Bigoga, Wolfgang Eyisap Ekoko, Achille Binyang, Michael Piameu, Lili Ranaise Mbakop, Betrand Nono Fesuh, Narcisse Mvondo, Raymond Tabue, Philippe Nwane, R. Mimpfoundi, Jean-Claude Toto, Immo Kleinschmidt, Tessa B. Knox, Abraham Mnzava, Martin J. Donnelly, Étienne Fondjo, Josiane Etang
Software Mentions: 9
Published: almost 6 years ago

10.3390/s19122772

Extracting Value from Industrial Alarms and Events: A Data-Driven Approach Based on Exploratory Data Analysis
Cited by: 16
Author(s): Aguinaldo Bezerra, Ivanovitch Silva, Luiz Affonso Guedes, Diego R. C. Silva, Gustavo Bezerra Paz Leitão, Kaku Saito
Software Mentions: 9
Published: over 5 years ago

10.3390/microorganisms9091814

Presence of Human Pathogens of the Borrelia burgdorferi sensu lato Complex Shifts the Sequence Read Abundances of Tick Microbiomes in Two German Locations
Cited by: 7
Author(s): Angeline Hoffmann, Thomas Müller, Volker Fingerle, Matthias Noll
Software Mentions: 9
Published: about 3 years ago

10.3389/fpls.2015.01172

The Potential of the MAGIC TOM Parental Accessions to Explore the Genetic Variability in Tomato Acclimation to Repeated Cycles of Water Deficit and Recovery
Cited by: 23
Author(s): Julie Ripoll, Laurent Urban, Nadia Bertin
Software Mentions: 9
Published: almost 9 years ago

10.3390/ijms221910277

Deciphering Differential Life Stage Radioinduced Reproductive Decline in Caenorhabditis elegans through Lipid Analysis
Cited by: 4
Author(s): Elizabeth Dufourcq‐Sekatcheff, Stéphan Cuiné, Yonghua Li‐Beisson, Loïc Quevarec, Myriam Richaud, Simon Galas, Sandrine Frelon
Software Mentions: 9
Published: about 3 years ago

10.3390/microorganisms9051009

Honeybees Exposure to Natural Feed Additives: How Is the Gut Microbiota Affected?
Cited by: 9
Author(s): Daniele Alberoni, Loredana Baffoni, Chiara Braglia, Francesca Gaggìa, Diana Di Gioia
Software Mentions: 9
Published: over 3 years ago

10.3390/ijms22042214

How Are the Flower Structure and Nectar Composition of the Generalistic Orchid Neottia ovata Adapted to a Wide Range of Pollinators?
Cited by: 8
Author(s): Emilia Brzosko, Andrzej Bajguz, Magdalena Chmur, Justyna Burzyńska, Edyta Jermakowicz, Paweł Mirski, Piotr Zieliński
Software Mentions: 9
Published: over 3 years ago

10.18632/oncotarget.27271

Single cell correlation analysis of liquid and solid biopsies in metastatic colorectal cancer
Cited by: 10
Author(s): Anna Sandström Gerdtsson, Jana-Aletta Thiele, Stephanie N. Shishido, Serena Zheng, Randolph Schaffer, Kelly Bethel, Steven A. Curley, Heinz‐Josef Lenz, Diana L. Hanna, Jorgé Nieva, Anand Kolatkar, C.B. Congregado Ruiz, Mariam Rodrı́guez-Lee, Gerard J. Oakley, Jerry S.H. Lee, James Hicks, Peter Kühn
Software Mentions: 9
Published: almost 5 years ago

10.1093/aobpla/plab016

Divergence of stem biomechanics and hydraulics between Bauhinia lianas and trees
Cited by: 6
Author(s): Xiangwu Yan, Yu Song, Fu-Chuan Wu, Shubin Zhang, Jiao‐Lin Zhang
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.ppat.1009278

Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy
Cited by: 11
Author(s): Fredrik Barrenäs, Scott G. Hansen, G. Lynn Law, Connor B. Driscoll, Richard Green, Eric E. Smith, Jean Chang, Inah Golez, Taryn Urion, Xinxia Peng, Leanne S. Whitmore, Daniel J. Newhouse, Colette M. Hughes, David W. Morrow, Kurt T. Randall, Andrea N. Selseth, Julia C. Ford, Roxanne M. Gilbride, Bryan E. Randall, Emily Ainslie, Kelli Oswald, Rebecca Shoemaker, Randy Fast, William J. Bosche, Michael K. Axthelm, Yoshinori Fukazawa, George N. Pavlakis, Barbara K. Felber, Slim Fourati, Rafick Pierre Sékaly, Jeffrey D. Lifson, Jan Komorowski, Ewelina Kosmider, Danica Shao, Wenjun Song, Paul T. Edlefsen, Louis J. Picker, Michael Gale
Software Mentions: 9
Published: over 3 years ago

10.1002/ece3.7662

Ant community composition and functional traits in new grassland strips within agricultural landscapes
Cited by: 5
Author(s): Victor Sebastian Scharnhorst, Konrad Fiedler, Thomas Frank, Dietmar Moser, Dominik Rabl, Manuela Brandl, Raja Imran Hussain, Ronnie Walcher, Bea Maas
Software Mentions: 9
Published: over 3 years ago

10.3389/fimmu.2021.623762

Gene Expression Classifier Reveals Prognostic Osteosarcoma Microenvironment Molecular Subtypes
Cited by: 14
Author(s): Yi-Jiang Song, Yanyang Xu, Cong Deng, Xuejun Zhu, Jianchang Fu, Hongmin Chen, Jinchang Lu, Huaiyuan Xu, Guohui Song, Qinglian Tang, Jin Wang
Software Mentions: 9
Published: over 3 years ago

10.1038/s41598-021-96095-z

Cell survival and DNA damage repair are promoted in the human blood thanatotranscriptome shortly after death
Cited by: 1
Author(s): Laura G. Antiga, Lode Sibbens, Yasmina Abakkouy, Ronny Decorte, Wouter Van Den Bogaert, Wim Van de Voorde
Software Mentions: 9
Published: over 3 years ago

10.3390/ijerph17113854

Nontuberculous Mycobacterial Disease and Molybdenum in Colorado Watersheds
Cited by: 16
Author(s): Ettie M. Lipner, Joshua P. French, Carleton R. Bern, Katherine Walton-Day, D. Knox, Michael Strong, D. Rebecca Prevots, James Crooks
Software Mentions: 8
Published: over 4 years ago

10.3390/biology8040088

Reproductive Biology and Ecology of the Green Mussel Perna viridis: A Multidisciplinary Approach
Cited by: 8
Author(s): Md. Asaduzzaman, Aysha Rahi Noor, Md. Moshiur Rahman, Shirin Akter, Nayeema Ferdausy Hoque, Abrar Shakil, Abdul Wahab
Software Mentions: 8
Published: about 5 years ago

10.1080/15592294.2019.1603963

Identification of DNA methylation patterns predisposing for an efficient response to BCG vaccination in healthy BCG-naïve subjects
Cited by: 32
Author(s): Jyotirmoy Das, Deepti Verma, Mika Gustafsson, Maria Lerm
Software Mentions: 8
Published: over 5 years ago

10.3390/genes10110875

The Role of Plasticity and Adaptation in the Incipient Speciation of a Fire Salamander Population
Cited by: 6
Author(s): Joana Sabino‐Pinto, Daniel J. Goedbloed, Eugenia Sanchez, Thomas Czypionka, Arne W. Nolte, Sebastian Steinfartz
Software Mentions: 8
Published: about 5 years ago

10.3390/toxins11100612

Lipophilic Toxins in Galicia (NW Spain) between 2014 and 2017: Incidence on the Main Molluscan Species and Analysis of the Monitoring Efficiency
Cited by: 21
Author(s): Juan Blanco, Fabiola Arévalo, Jorge Correa, Á. Moroño
Software Mentions: 8
Published: about 5 years ago

10.1038/tp.2016.275

A methylome-wide mQTL analysis reveals associations of methylation sites with GAD1 and HDAC3 SNPs and a general psychiatric risk score
Cited by: 28
Author(s): Diana‐Maria Ciuculete, Adrian Boström, Sarah Voisin, H. Philipps, Olga E. Titova, Marcus Bandstein, Lamia Nikontovic, Michael J. Williams, Jessica Mwinyi, Helgi B. Schiöth
Software Mentions: 8
Published: almost 8 years ago

10.1371/journal.pone.0246052

Transcriptomic profiling of susceptible and resistant flax seedlings after Fusarium oxysporum lini infection
Cited by: 10
Author(s): Aleksandra Boba, Kamil Kostyń, Bartosz Kozak, Iwan Zalewski, Jan Szopa, Anna Kulma
Software Mentions: 8
Published: almost 4 years ago

10.3389/fpls.2020.00820

Biological Nitrification Inhibition (BNI): Phenotyping of a Core Germplasm Collection of the Tropical Forage Grass Megathyrsus maximus Under Greenhouse Conditions
Cited by: 28
Author(s): Daniel Villegas, Ashly Arévalo, Jonathan Nùñez, Johanna Mazabel, G. V. Subbarao, Idupulapati M. Rao, Jose J De Vega, Jacobo Arango
Software Mentions: 8
Published: over 4 years ago

10.3390/pathogens10010049

Immune Cell Production Is Targeted by Parasitoid Wasp Virulence in a Drosophila–Parasitoid Wasp Interaction
Cited by: 2
Author(s): Jordann E. Trainor, Pooja Kr, Nathan T. Mortimer
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0248889

Lung gene expression and single cell analyses reveal two subsets of idiopathic pulmonary fibrosis (IPF) patients associated with different pathogenic mechanisms
Cited by: 10
Author(s): Jozsef Karman, Jing Wang, Corneliu Bodea, Sherry Cao, Marc C. Levesque
Software Mentions: 8
Published: over 3 years ago

10.1007/s00122-021-03882-3

Genomic signatures of selection for resistance to stripe rust in Austrian winter wheat
Cited by: 2
Author(s): Laura Morales, Sebastian Michel, Christian Ametz, Hermann Gregor Dallinger, Franziska Löschenberger, Anton Neumayer, Simone Zimmerl, Hermann Buerstmayr
Software Mentions: 8
Published: over 3 years ago

10.1128/mBio.00925-19

A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium
Cited by: 95
Author(s): Jacob L. Steenwyk, Xing‐Xing Shen, Abigail Lind, Gustavo H. Goldman, Antonis Rokas
Software Mentions: 8
Published: about 5 years ago

10.7554/eLife.62208

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen
Cited by: 30
Author(s): David E. Cook, Holger Kramer, David E Torres, Michael Seidl, Bart P.H.J. Thomma
Software Mentions: 8
Published: almost 4 years ago

10.3389/fmicb.2017.02512

Worldwide Phylogenetic Group Patterns of Escherichia coli from Commensal Human and Wastewater Treatment Plant Isolates
Cited by: 69
Author(s): Nancy de Castro Stoppe, Juliana Saragiotto Silva, Camila Carlos, Maria Inês Z. Sato, Antônio Mauro Saraiva, Laura Maria Mariscal Ottoboni, Tatiana Teixeira Torres
Software Mentions: 8
Published: almost 7 years ago

10.1038/s41422-018-0053-3

Spatial transcriptomic survey of human embryonic cerebral cortex by single-cell RNA-seq analysis
Cited by: 162
Author(s): Xiaoying Fan, Ji Dong, Shaobo Zhong, Wei Yuan, Qian Wu, Liying Yan, Jun Yong, Le Sun, Xiaoye Wang, Yangyu Zhao, Wei Wang, Jie Yan, Xiaoqun Wang, Jie Qiao, Fuchou Tang
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0255190

The effect of risk at birth on breastfeeding duration and exclusivity: A cohort study at a Brazilian referral center for high-risk neonates and infants
Cited by: 1
Author(s): Maíra Domingues Bernardes Silva, Raquel Oliveira, Davi da Silveira Barroso Alves, Enirtes Caetano Prates Melo
Software Mentions: 8
Published: over 3 years ago

10.3390/cancers13133374

Major Oncogenic Drivers and Their Clinicopathological Correlations in Sporadic Childhood Papillary Thyroid Carcinoma in Belarus
Cited by: 5
Author(s): Tatiana Rogounovitch, Svetlana Mankovskaya, Mikhail Fridman, Tatiana A. Leonova, Victor Alexandrovich Kondratovitch, N. E. Konoplya, Shunichi Yamashita, Norisato Mitsutake, Vladimir Saenko
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0251416

Compounds from plantar foot sweat, nesting material, and urine show strain patterns associated with agonistic and affiliative behaviors in group housed male mice, Mus musculus
Cited by: 4
Author(s): Amanda J. Barabas, Helena A. Soini, Miloš V. Novotný, David R. Williams, Jacob A. Desmond, Jeffrey R. Lucas, Marisa A. Erasmus, Heng-Wei Cheng, Brianna N. Gaskill
Software Mentions: 8
Published: over 3 years ago

10.3389/fpls.2020.00212

Functional Trait Variation Among and Within Species and Plant Functional Types in Mountainous Mediterranean Forests
Cited by: 28
Author(s): Nikolaos M. Fyllas, Chrysanthi Michelaki, Alexandros Galanidis, Eleftherios Evangelou, Joana Zaragoza‐Castells, Panayiotis G. Dimitrakopoulos, Christos Tsadilas, Μαργαρίτα Αριανούτσου, J. Lloyd
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-019-47117-4

Using a trait-based approach to understand the efficiency of a selective device in a multispecific fishery
Cited by: 7
Author(s): Maud Mouchet, Manon Poirson, Fabien Morandeau, Camille Vogel, Sonia Méhault, Dorothée Kopp
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pbio.2002054

Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells
Cited by: 76
Author(s): Colin R. Lickwar, J. Gray Camp, Matthew Weiser, Jordan L. Cocchiaro, David M. Kingsley, Terrence S. Furey, Shehzad Z. Sheikh, John F. Rawls
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pbio.3001007

ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
Cited by: 180
Author(s): Jacob L. Steenwyk, Thomas J. Buida, Yuanning Li, Xing‐Xing Shen, Antonis Rokas
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pone.0253038

Striking between-population floral divergences in a habitat specialized plant
Cited by: 1
Author(s): Sumayya Abdul Rahim, Ullasa Kodandaramaiah, Aboli Kulkarni, Deepak Barua
Software Mentions: 8
Published: over 3 years ago

10.1155/2021/8859996

Potential Prognostic Biomarkers of Lung Adenocarcinoma Based on Bioinformatic Analysis
Cited by: 17
Author(s): Jili Hou, Yong Cheng
Software Mentions: 8
Published: almost 4 years ago

10.3390/plants10030550

Phenolic Compounds and Biological Activity of Selected Mentha Species
Cited by: 51
Author(s): Sanja Ćavar Zeljković, Jana Šišková, Karolína Komzáková, Nuria De Diego, K. Kaffková, Petr Tarkowski
Software Mentions: 8
Published: over 3 years ago

10.3390/biom10081179

Dietary Supplementation with Sugar Beet Fructooligosaccharides and Garlic Residues Promotes Growth of Beneficial Bacteria and Increases Weight Gain in Neonatal Lambs
Cited by: 2
Author(s): Narciso M. Quijada, Raúl Bodas, José M. Lorenzo, Stephan Schmitz‐Esser, David Rodrı́guez-Làzaro, Marta Hernández
Software Mentions: 8
Published: over 4 years ago

Projects: cran: FactoMineR

Papers Mentioning FactoMineR 1,101