Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.38579

https://doi.org/10.7554/eLife.38579

Cited by: 52
Author(s): Soledad A. Camolotto, S. R. Pattabiraman, Timothy Mosbruger, Alex Jones, Veronika K Belova, Grace Orstad, Mitchell Streiff, Lydia Salmond, Chris Stubben, Klaus H. Kaestner, Eric L. Snyder
Published: over 5 years ago

Software Mentions 12

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: FactoMineR
Multivariate Exploratory Data Analysis and Data Mining
Papers that mentioned: 1,101
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lsa
Latent Semantic Analysis
Papers that mentioned: 5
cran: rsem
Robust Structural Equation Modeling with Missing Data and Auxiliary Variables
Papers that mentioned: 53
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: calculate-expression
simple tool to calculate expressions
Papers that mentioned: 3
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: lsa
Local Simularity Analysis Package.
Papers that mentioned: 5