10.2196/21212

Patterns of Routes of Administration and Drug Tampering for Nonmedical Opioid Consumption: Data Mining and Content Analysis of Reddit Discussions
Cited by: 15
Author(s): Duilio Balsamo, Paolo Bajardi, Alberto Salomone, Rossano Schifanella
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pntd.0008617

Human exposure to zoonotic malaria vectors in village, farm and forest habitats in Sabah, Malaysian Borneo
Cited by: 16
Author(s): Rebecca Brown, Tock Hing Chua, Kimberly Fornace, Chris Drakeley, Indra Vythilingam, Heather M. Ferguson
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0090801

Biclustering Methods: Biological Relevance and Application in Gene Expression Analysis
Cited by: 77
Author(s): Ali Oghabian, Sami Kilpinen, Sampsa Hautaniemi, Elena Czeizler
Software Mentions: 6
Published: over 12 years ago

10.1186/1471-2105-15-170

Ensemble analyses improve signatures of tumour hypoxia and reveal inter-platform differences
Cited by: 24
Author(s): Natalie S. Fox, Maud H.W. Starmans, Syed Haider, Philippe Lambin, Paul C. Boutros
Software Mentions: 6
Published: about 12 years ago

10.3390/genes11101124

Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of qDTYs to Reproductive-Stage Drought Stress in Rice (Oryza sativa L.)
Cited by: 11
Author(s): Jeshurun Asher Tarun, Ramil Mauleon, Juan David Arbelaez, Sheryl Catausan, Shalabh Dixit, Arvind Kumar, Patrick J. Brown, Ajay Kohli, Tobias Kretzschmar
Software Mentions: 6
Published: almost 6 years ago

10.1111/ejn.15213

Functional connectivity of the hippocampus and its subfields in resting‐state networks
Cited by: 18
Author(s): Laura Ezama, Juan Andrés Hernández‐Cabrera, Sara Seoane, Ernesto Pereda, Niels Janssen
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.5669

From the cage to the wild: introductions of Psittaciformes to Puerto Rico
Cited by: 10
Author(s): Wilfredo Falcón, Raymond L. Tremblay
Software Mentions: 6
Published: over 7 years ago

10.1186/s12864-019-5453-3

Genome-wide signatures of local adaptation among seven stoneflies species along a nationwide latitudinal gradient in Japan
Cited by: 15
Author(s): Maribet Gamboa, Kozo Watanabe
Software Mentions: 6
Published: over 7 years ago

10.3390/genes11121487

RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow
Cited by: 13
Author(s): Marie Lataretu, Martin Hölzer
Software Mentions: 6
Published: over 5 years ago

10.1038/gim.2015.156

VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data
Cited by: 58
Author(s): Trevor J. Pugh, Sami S. Amr, Mark J. Bowser, Sivakumar Gowrisankar, Elizabeth Hynes, Lisa Mahanta, Heidi L. Rehm, Birgit Funke, Matthew S. Lebo
Software Mentions: 6
Published: about 10 years ago

10.1007/s00436-020-06666-8

Research paper on abiotic factors and their influence on Ixodes ricinus activity—observations over a two-year period at several tick collection sites in Germany
Cited by: 14
Author(s): Jörn Gethmann, Bernd Hoffmann, Elisa Kasbohm, Jochen Süß, Birgit Habedank, Franz Josef Conraths, Martin Beer, Christine Klaus
Software Mentions: 6
Published: over 6 years ago

10.3390/ijms22168482

Multicellular Human Cardiac Organoids Transcriptomically Model Distinct Tissue-Level Features of Adult Myocardium
Cited by: 17
Author(s): Charles M. Kerr, Dylan Richards, Donald R. Menick, Kristine Y. DeLeon‐Pennell, Ying Mei
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0113767

Implementing Spatial Segregation Measures in R
Cited by: 26
Author(s): Sung-Jin Hong, David O’Sullivan, Yukio Sadahiro
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pntd.0000436

Cholera Epidemics, War and Disasters around Goma and Lake Kivu: An Eight-Year Survey
Cited by: 72
Author(s): Didier Bompangue, Patrick Giraudoux, Martine Piarroux, Guy Mutombo, Rick Shamavu, Bertrand Súdre, Annie Mutombo, Vital Mondonge, Renaud Piarroux
Software Mentions: 6
Published: about 17 years ago

10.3390/cancers12061507

Small Non-Coding RNA Profiling in Plasma Extracellular Vesicles of Bladder Cancer Patients by Next-Generation Sequencing: Expression Levels of miR-126-3p and piR-5936 Increase with Higher Histologic Grades
Cited by: 33
Author(s): Alexandru A Sabo, Giovanni Birolo, Alessio Naccarati, Mihnea P. Dragomir, Serena Aneli, Alessandra Allione, Marco Oderda, Marco Allasia, Paolo Gontero, Carlotta Sacerdote, Paolo Víneis, Giuseppe Matullo, Barbara Pardini
Software Mentions: 6
Published: about 6 years ago

10.3390/ijms22115814

Genomic Characterization of Cisplatin Response Uncovers Priming of Cisplatin-Induced Genes in a Resistant Cell Line
Cited by: 7
Author(s): Hadar Golan Berman, Pooja Chauhan, Shira Shalev, Hiba Hassanain, Avital Parnas, Sheera Adar
Software Mentions: 6
Published: about 5 years ago

10.3390/ijms22126319

Expression Quantitative Trait Loci (eQTLs) Associated with Retrotransposons Demonstrate their Modulatory Effect on the Transcriptome
Cited by: 6
Author(s): Sulev Kõks, Abigail L Pfaff, Vivien J. Bubb, John P. Quinn
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2020.01528

Microbiome Variation Across Two Hemlock Species With Hemlock Woolly Adelgid Infestation
Cited by: 7
Author(s): Nicholas C. Dove, Timothy J. Rogers, Christy Leppanen, Daniel Simberloff, James A. Fordyce, Veronica A. Brown, Anthony V. LeBude, Thomas G. Ranney, Melissa Cregger
Software Mentions: 6
Published: almost 6 years ago

10.3389/fpls.2017.01926

A Pectin Methylesterase ZmPme3 Is Expressed in Gametophyte factor1-s (Ga1-s) Silks and Maps to that Locus in Maize (Zea mays L.)
Cited by: 28
Author(s): Adrienne N. Moran Lauter, Michael G. Muszynski, Ryan D. Huffman, M. Paul Scott
Software Mentions: 6
Published: over 8 years ago

10.1186/s12967-017-1201-0

Whole blood gene expression in adolescent chronic fatigue syndrome: an exploratory cross-sectional study suggesting altered B cell differentiation and survival
Cited by: 46
Author(s): Chinh Bkrong Nguyen, Lene Alsøe, Jessica M. Lindvall, Dag Sulheim, Even Fagermoen, Anette Winger, Mari Kaarbø, Hilde Nilsen, Vegard Bruun Wyller
Software Mentions: 6
Published: about 9 years ago

10.3389/fmicb.2020.00954

Persistence of a Core Microbiome Through the Ontogeny of a Multi-Host Parasite
Cited by: 22
Author(s): Fátima Jorge, Nolwenn M. Dheilly, Robert Poulin
Software Mentions: 6
Published: about 6 years ago

10.3390/v12101145

Unmapped RNA Virus Diversity in Termites and Their Symbionts
Cited by: 23
Author(s): Callum Le Lay, Mǎng Shī, Aleš Buček, Thomas Bourguignon, Nathan Lo, Edward C. Holmes
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms22094531

Knockdown of the Ribosomal Protein eL38 in HEK293 Cells Changes the Translational Efficiency of Specific Genes
Cited by: 4
Author(s): Alexander V. Gopanenko, Alena V. Kolobova, Alexey E. Tupikin, Мarsel R. Kabilov, Alexey A. Malygin, Г. Г. Карпова
Software Mentions: 6
Published: about 5 years ago

10.1534/g3.117.300489

<i>Drosophila</i>Larval Brain Neoplasms Present Tumour-Type Dependent Genome Instability
Cited by: 4
Author(s): Fabrizio Rossi, Camille Stephan‐Otto Attolini, José Luis Mosquera, Cayetano González
Software Mentions: 6
Published: over 8 years ago

10.3390/v13081654

Longitudinal Secretion of Paramyxovirus RNA in the Urine of Straw-Coloured Fruit Bats (Eidolon helvum)
Cited by: 2
Author(s): Elli Rosa Jolma, Louise Gibson, Richard Suu‐Ire, Grace Fleischer, Samuel Asumah, Sylvester Languon, Olivier Restif, James L. N. Wood, Andrew A. Cunningham
Software Mentions: 6
Published: almost 5 years ago

10.3390/microorganisms9030492

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study
Cited by: 11
Author(s): Barry Linnane, Aaron M. Walsh, Calum J. Walsh, Fiona Crispie, Órla O’Sullivan, Paul D. Cotter, Michael McDermott, J. A. A. Renwick, Paul McNally
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2021.688493

Cohesin Core Complex Gene Dosage Contributes to Germinal Center Derived Lymphoma Phenotypes and Outcomes
Cited by: 4
Author(s): Martín A. Rivas, Ceyda Durmaz, Andreas Kloetgen, Cristopher R Chin, Zhengming Chen, Bhavneet Bhinder, Amnon Koren, Aaron D. Viny, Christopher D. Scharer, Jeremy M. Boss, Olivier Elemento, Christopher E. Mason, Ari Melnick
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.ppat.1009454

Effector and regulator: Diverse functions of C. elegans C-type lectin-like domain proteins
Cited by: 17
Author(s): Barbara Pees, Wentao Yang, Anke Kloock, Carola Petersen, Lena Peters, Liancheng Fan, Meike Friedrichsen, Sabrina Butze, Alejandra Zárate-Potes, Hinrich Schulenburg, Katja Dierking
Software Mentions: 6
Published: over 5 years ago

10.3389/fpsyg.2019.00862

Experimental Investigation on the Elicitation of Subjective Distributions
Cited by: 6
Author(s): Carlos Barrera-Causil, Juan Carlos Correa, Fernando Marmolejo‐Ramos
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-020-80533-5

Structural aspects of lesional and non-lesional skin microbiota reveal key community changes in leprosy patients from India
Cited by: 5
Author(s): Nitin Bayal, Sunil Nagpal, Mohammed Monzoorul Haque, Milind S. Patole, Yogesh S. Shouche, Shekhar C. Mande, Sharmila S. Mande
Software Mentions: 6
Published: over 5 years ago

10.3389/fnbeh.2020.581296

A Probiotic Mixture Induces Anxiolytic- and Antidepressive-Like Effects in Fischer and Maternally Deprived Long Evans Rats
Cited by: 6
Author(s): Valérie Daugé, Catherine Philippe, Mahendra Mariadassou, Olivier Rué, Jean‐Charles Martin, Marie Rossignol, Nathalie Dourmap, Ljubica Svilar, Franck Tourniaire, Magali Monnoye, Déborah Jardet, Marie Bangratz, Sophie Holowacz, Sylvie Rabot, Laurent Naudon
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9020208

Aquatic Bacterial Diversity, Community Composition and Assembly in the Semi-Arid Inner Mongolia Plateau: Combined Effects of Salinity and Nutrient Levels
Cited by: 29
Author(s): Xiangming Tang, Guobo Xie, Kwang‐Tsao Shao, Wei Tian, Guang Gao, Boqiang Qin
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.58371

Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
Cited by: 17
Author(s): Tjorven Hinzke, Manuel Kleiner, Mareike Meister, Rabea Schlüter, Christian Hentschker, Jan Pané‐Farré, Petra Hildebrandt, Horst Felbeck, Stefan M. Sievert, Florian Bonn, Uwe Völker, Dörte Becher, Thomas Schweder, Stephanie Markert
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.47898

CTCF confers local nucleosome resiliency after DNA replication and during mitosis
Cited by: 52
Author(s): Nick Owens, Thaleia Papadopoulou, Nicola Festuccia, Alexandra Tachtsidi, Inma González, Agnès Dubois, Sandrine Vandormael-Pournin, Elphège P. Nora, Benoit G. Bruneau, Michel Cohen-Tannoudji, Pablo Navarro
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-77055-5

Identification of transcription factor co-regulators that drive prostate cancer progression
Cited by: 11
Author(s): Manjunath Siddappa, Sajad A. Wani, Mark D. Long, Damien A. Leach, Ewy A. Mathé, Charlotte Bevan, Moray J. Campbell
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8020279

Diversity of Bacterial Biosynthetic Genes in Maritime Antarctica
Cited by: 9
Author(s): Adriana Rego, António G G Sousa, João P. Santos, Francisco Pascoal, João Canário, Pedro N. Leão, Catarina Magalhães
Software Mentions: 6
Published: over 6 years ago

10.1093/conphys/coab071

Water deprivation compromises maternal physiology and reproductive success in a cold and wet adapted snake <i>Vipera berus</i>
Cited by: 12
Author(s): Mathias Dezetter, Jean‐François Le Galliard, Gaëtan Guiller, Michaël Guillon, Mathieu Leroux‐Coyau, Sandrine Meylan, François Brischoux, Frédéric Angelier, Olivier Lourdais
Software Mentions: 6
Published: over 5 years ago

10.1093/conphys/coz018

Tracking transcriptomic responses to endogenous and exogenous variation in cetaceans in the Southern California Bight
Cited by: 8
Author(s): Marisa L. Trego, Andrew Whitehead, Nicholas M. Kellar, Morgane Lauf, Rebecca L. Lewison
Software Mentions: 6
Published: over 7 years ago

10.1038/s42003-020-0916-2

Tankyrase inhibition sensitizes melanoma to PD-1 immune checkpoint blockade in syngeneic mouse models
Cited by: 23
Author(s): Jo Waaler, Line Mygland, Anders Aune Tveita, Martin Frank Strand, Nina Solberg, Petter Olsen, Aleksandra Aizenshtadt, Marte Fauskanger, Kaja Lund, Jo Waaler, Max Lycke, Elisabeth Dybing, Vegard Nygaard, Sigurd Leinæs Bøe, Karen‐Marie Heintz, Eivind Hovig, Clara Hammarström, Alexandre Corthay, Stefan Krauß
Software Mentions: 6
Published: about 6 years ago

10.1038/s42003-019-0610-4

Above-below surface interactions mediate effects of seagrass disturbance on meiobenthic diversity, nematode and polychaete trophic structure
Cited by: 4
Author(s): Francisco J. A. Nascimento, Martin Dahl, Diana Deyanova, Liberatus D. Lyimo, Holly M. Bik, Taruna Schuelke, Tiago José Pereira, Mats Björk, Simon Creer, Martin Gullström
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12917-020-02332-4

Dietary supplementation of micro-encapsulated sodium butyrate in healthy horses: effect on gut histology and immunohistochemistry parameters
Cited by: 7
Author(s): Wendy Wambacq, D.A. van Doorn, Pauline Rovers-Paap, Richard Ducatelle, Lieven Vlaminck, Marta Ribeiro Alves Lourenço, Myriam Hesta
Software Mentions: 6
Published: about 6 years ago

10.1186/s12882-019-1494-8

Use of estimated glomerular filtration rate to predict incident chronic kidney disease in patients at risk of cardiovascular disease: a retrospective study
Cited by: 8
Author(s): Saif Al-Shamsi, Abderrahim Oulhaj, Dybesh Regmi, Romona Devi Govender
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0218458

p73 regulates epidermal wound healing and induced keratinocyte programming
Cited by: 18
Author(s): J. Scott Beeler, Clayton B. Marshall, Paula I. González-Ericsson, Timothy M. Shaver, Gabriela L. Santos Guasch, Spencer Lea, Kimberly N. Johnson, Hailing Jin, Bryan J. Venters, Melinda E. Sanders, Jennifer A. Pietenpol
Software Mentions: 6
Published: about 7 years ago

10.7717/peerj.8412

Prognostic analysis of very early onset pancreatic cancer: a population-based analysis
Cited by: 3
Author(s): Dongjun Dai, Yanmei Wang, Xinyang Hu, Hongchuan Jin, Xian Wang
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-017-1990-4

MetaGenyo: a web tool for meta-analysis of genetic association studies
Cited by: 78
Author(s): Jordi Martorell-Marugán, Daniel Toro-Domínguez, Marta E. Alarcón‐Riquelme, Pedro Carmona-Sáez
Software Mentions: 6
Published: over 8 years ago

10.1099/mgen.0.000585

Comparative genomic insights into the epidemiology and virulence of plant pathogenic pseudomonads from Turkey
Cited by: 2
Author(s): Marcus M. Dillon, Tatiana Ruiz-Bedoya, Cedoljub Bundalovic-Torma, Kevin Guttman, Haejin Angela Kwak, Maggie A. Middleton, Pauline W. Wang, Sümer Horuz, Y. Aysan, David S. Guttman
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0246656

Carbon fixation and rhodopsin systems in microbial mats from hypersaline lakes Brava and Tebenquiche, Salar de Atacama, Chile
Cited by: 10
Author(s): Daniel Kurth, Darío Elías, María Cecilia Rasuk, Manuel Contreras, Marı́a Eugenia Farı́as
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0217050

Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples
Cited by: 61
Author(s): Lucas Czech, Alexandros Stamatakis
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pgen.1009432

Region-specific H3K9me3 gain in aged somatic tissues in Caenorhabditis elegans
Cited by: 12
Author(s): Chenglin Li, Mintie Pu, Wenke Wang, Amaresh Chaturbedi, Felicity J Emerson, Siu Sylvia Lee
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pgen.1009474

Dynamic neurogenomic responses to social interactions and dominance outcomes in female paper wasps
Cited by: 6
Author(s): Floria M. K. Uy, Christopher M. Jernigan, Natalie C. Zaba, Eshan Mehrotra, Sara Miller, Michael J. Sheehan
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pgen.1009338

Fruitless decommissions regulatory elements to implement cell-type-specific neuronal masculinization
Cited by: 15
Author(s): Margarita V. Brovkina, Rachel Duffié, Abbigayl E. C. Burtis, E. Josephine Clowney
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1008250

Molecular dissection of the oncogenic role of ETS1 in the mesenchymal subtypes of head and neck squamous cell carcinoma
Cited by: 22
Author(s): Christian Gluck, Alexandra Ruth Glathar, Maria Tsompana, Norma J. Nowak, Lee Ann Garrett‐Sinha, Michael Buck, Satrajit Sinha
Software Mentions: 6
Published: almost 7 years ago

10.1161/CIRCULATIONAHA.119.039596

Widespread Translational Control of Fibrosis in the Human Heart by RNA-Binding Proteins
Cited by: 74
Author(s): Sonia Chothani, Sebastian Schäfer, Eleonora Adami, V. Sivakumar, Anissa A. Widjaja, Sarah R. Langley, Jessie Tan, Mao Wang, Nicholas M Quaife, Chee Jian Pua, G. D’Agostino, Shamini Guna Shekeran, Benjamin L. George, Si Ching Lim, Elaine Yiqun Cao, Sebastiaan van Heesch, Franziska Witte, Leanne E. Felkin, Eleni G. Christodoulou, Jinqiao Dong, Susanne Blachut, Giannino Patone, Paul J.R. Barton, Norbert Hübner, Stuart A. Cook, Owen J. L. Rackham
Software Mentions: 6
Published: almost 7 years ago

10.7717/peerj.1796

Taxonomic revision of the Malagasy members of the<i>Nesomyrmex angulatus</i>species group using the automated morphological species delineation protocol NC-PART-clustering
Cited by: 14
Author(s): Sándor Csősz, Brian L. Fisher
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-021-97891-3

Soft threshold partial least squares predicts the survival fraction of malignant glioma cells against different concentrations of methotrexate’s derivatives
Cited by: 0
Author(s): Tahir Mehmood, Mudassir Iqbal
Software Mentions: 6
Published: almost 5 years ago

10.7554/eLife.50103

Developmental variability channels mouse molar evolution
Cited by: 14
Author(s): Luke Hayden, Kateřina Lochovská, Marie Sémon, Sabrina Renaud, Marie Laure Delignette-Muller, Maurine Vilcot, Renata Peterková, Maria Hovořáková, Sophie Pantalacci
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0075136

Synergistic Re-Activation of Epigenetically Silenced Genes by Combinatorial Inhibition of DNMTs and LSD1 in Cancer Cells
Cited by: 31
Author(s): Han Han, Xiaojing Yang, Kurinji Pandiyan, Gangning Liang
Software Mentions: 6
Published: almost 13 years ago

10.1371/journal.pone.0161990

Pig Abattoir Inspection Data: Can It Be Used for Surveillance Purposes?
Cited by: 29
Author(s): Carla Correia‐Gomes, Richard P. Smith, Jude Eze, Madeleine K. Henry, George J. Gunn, Susanna Williamson, Sue C. Tongue
Software Mentions: 6
Published: almost 10 years ago

10.7717/peerj.5715

Effects of agricultural management on phyllosphere fungal diversity in vineyards and the association with adjacent native forests
Cited by: 24
Author(s): Luis E. Castañeda, Tohru Miura, Roland Sánchez, Olga Barbosa
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-020-0783-6

Dietary effects on gut microbiota of the mesquite lizard Sceloporus grammicus (Wiegmann, 1828) across different altitudes
Cited by: 36
Author(s): Nina Montoya‐Ciriaco, Selene Gómez-Acata, Ligia Catalina Muñoz-Arenas, Luc Dendooven, Arturo Estrada–Torres, Aníbal H. Díaz de la Vega‐Pérez, Yendi E. Navarro‐Noya
Software Mentions: 6
Published: over 6 years ago

10.1038/s41396-020-00783-z

Root pathogen diversity and composition varies with climate in undisturbed grasslands, but less so in anthropogenically disturbed grasslands
Cited by: 16
Author(s): Camille S. Delavaux, Josh L. Schemanski, Geoffrey L. House, Alice G. Tipton, Benjamin A. Sikes, James D. Bever
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41396-021-00987-x

Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria
Cited by: 14
Author(s): François Thomas, Nolwen Le Duff, Ting-Di Wu, Aurélie Cébron, Stéphane Uroz, Pascal Riera, Cédric Leroux, Gwenn Tanguy, Erwan Legeay, Jean‐Luc Guerquin‐Kern
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0191781

Large-scale climatic phenomena drive fluctuations in macroinvertebrate assemblages in lowland tropical streams, Costa Rica: The importance of ENSO events in determining long-term (15y) patterns
Cited by: 23
Author(s): Pablo E. Gutiérrez‐Fonseca, Alonso Ramírez, Catherine M. Pringle
Software Mentions: 6
Published: over 8 years ago

10.3390/jof7030226

The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
Cited by: 34
Author(s): Thomas S. Jung, Marília Horta Jung, Joan Webber, Koji Kageyama, Ayaka Hieno, Hayato Masuya, Satoshi Uematsu, A. Pérez‐Sierra, Anna Harris, Jack Forster, Harvey Rees, Bruno Scanu, Sneha Patra, Tomáš Kudláček, Jan Janoušek, Tamara Corcobado, Ivan Milenković, Zoltán Á. Nagy, Ildikó Csorba, J. Bakonyi, C. M. Brasier
Software Mentions: 6
Published: over 5 years ago

10.1155/2015/670691

Statistical Methods for Establishing Personalized Treatment Rules in Oncology
Cited by: 16
Author(s): Junsheng Ma, Brian P. Hobbs, Francesco C. Stingo
Software Mentions: 6
Published: over 11 years ago

10.1186/s12866-019-1464-0

Statistical evaluation of diet-microbe associations
Cited by: 12
Author(s): Xiang Zhang, Max Nieuwdorp, Albert K. Groen, A. H. Zwinderman
Software Mentions: 6
Published: about 7 years ago

10.1128/mSphere.00393-21

Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance
Cited by: 3
Author(s): Laura J. Dunphy, Glynis L. Kolling, Matthew L. Jenior, Joanne Carroll, April E Attai, Farzad Farnoud, Amy J Mathers, Molly A. Hughes, Jason A. Papin
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0257072

Cytochrome P450-2D6: A novel biomarker in liver cancer health disparity
Cited by: 7
Author(s): Zahraa I. Khamis, Xiaodong Pang, Zihan Cui, Qing-Xiang Amy Sang, Jinfeng Zhang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13062-017-0193-2

On the global CRISPR array behavior in class I systems
Cited by: 11
Author(s): Alice Toms, Rodolphe Barrangou
Software Mentions: 6
Published: almost 9 years ago

10.1098/rstb.2019.0035

Scaling of thermal tolerance with body mass and genome size in ectotherms: a comparison between water- and air-breathers
Cited by: 69
Author(s): Félix P. Leiva, Piero Calosi, Wilco C. E. P. Verberk
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0189616

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments
Cited by: 37
Author(s): Nicholas D. Youngblut, Samuel E. Barnett, Daniel H. Buckley
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pcbi.1004393

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud
Cited by: 73
Author(s): Malachi Griffith, Jason Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith
Software Mentions: 6
Published: almost 11 years ago

10.1186/s13071-015-1250-2

Ecology and spatiotemporal dynamics of sandflies in the Mediterranean Languedoc region (Roquedur area, Gard, France)
Cited by: 36
Author(s): Jorian Prudhomme, Nil Rahola, Céline Toty, Cécile Cassan, David Roiz, Baptiste Vergnes, Magalie Thierry, J. A. Rioux, Bülent Alten, Denis Sereno, Anne‐Laure Bañuls
Software Mentions: 6
Published: over 10 years ago

10.1002/stem.2521

Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells
Cited by: 37
Author(s): Agata Stryjewska, Ruben Dries, Tim Pieters, Griet Verstappen, Andrea Conidi, Kathleen Coddens, Annick Francis, Lieve Umans, Wilfred F. J. van IJcken, Geert Berx, Leo A. van Grunsven, Frank Grosveld, Steven Goossens, Jody J. Haigh, Danny Huylebroeck
Software Mentions: 6
Published: over 9 years ago

10.3389/fpsyg.2021.654266

The Influence of Language on Spatial Reasoning: Reading Habits Modulate the Formulation of Conclusions and the Integration of Premises
Cited by: 0
Author(s): Thomas Castelain, Jean-Baptiste Van der Henst
Software Mentions: 6
Published: about 5 years ago

10.1186/s12893-020-00726-7

A novel nomogram to predict the risk of anastomotic leakage in patients after oesophagectomy
Cited by: 10
Author(s): Chengjie Huang, Haijun Yao, Qi Huang, Huijie Lu, Mengdan Xu
Software Mentions: 6
Published: over 6 years ago

10.1186/s12870-019-2222-z

Transcriptomic and metabolomic analyses provide insight into the volatile compounds of citrus leaves and flowers
Cited by: 15
Author(s): Haipeng Zhang, Mengjun Chen, Wen Huang, Zhenhua Wang, Jiajing Chen, Fang Liu, Hongyan Zhang, Zongzhou Xie, Dong Jiang, Yunjiang Cheng, Juan Xu
Software Mentions: 6
Published: over 6 years ago

10.1186/s12870-018-1379-1

Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)
Cited by: 12
Author(s): Sean V. Burke, Mark C. Ungerer, Melvin R. Duvall
Software Mentions: 6
Published: almost 8 years ago

10.7717/peerj.5031

Specalyzer—an interactive online tool to analyze spectral reflectance measurements
Cited by: 2
Author(s): Alexander Koc, Tina Henriksson, Aakash Chawade
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-021-94442-8

Identification of pathological transcription in autosomal dominant polycystic kidney disease epithelia
Cited by: 1
Author(s): Sebastian Friedrich, Hannah Müller, Caroline Riesterer, Hannah Schüller, Katja Friedrich, Carlotta Leonie Wörner, Tilman Busch, Amandine Viau, E. Wolfgang Kuehn, Michael Köttgen, Alexis Hofherr
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0236878

Modeling cannabinoids from a large-scale sample of Cannabis sativa chemotypes
Cited by: 12
Author(s): Daniela Vergara, Reggie Gaudino, Thomas Blank, Brian Keegan
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.667477

Preoperative Predictors of Lymph Node Metastasis in Colon Cancer
Cited by: 3
Author(s): Yali Xu, Yi Chen, Chenyan Long, Haining Zhong, Fangfang Liang, Lingling Huang, Chuanyi Wei, Shaolong Lu, Weizhong Tang
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-60891-w

An atlas of evidence-based phenotypic associations across the mouse phenome
Cited by: 3
Author(s): Nobuhiko Tanaka, Hiroshi Masuya
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-019-5946-0

Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions
Cited by: 19
Author(s): Jules Deforges, Rodrigo S. Reis, Philippe Jacquet, Dominique Jacques Vuarambon, Yves Poirier
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-020-80240-1

Ethanol exposure drives colon location specific cell composition changes in a normal colon crypt 3D organoid model
Cited by: 11
Author(s): Matthew Devall, Sarah J. Plummer, Jennifer Bryant, Lucas T. Jennelle, Stephen Eaton, Christopher H. Dampier, Jeroen R. Huyghe, Ulrike Peters, Steven M. Powell, Graham Casey
Software Mentions: 6
Published: over 5 years ago

10.1186/s12866-019-1664-7

Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle
Cited by: 10
Author(s): Isaiah Paolo A. Lee, Cheryl P. Andam
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-69635-2

Rapid fragmentation of microplastics by the freshwater amphipod Gammarus duebeni (Lillj.)
Cited by: 91
Author(s): Alicia Mateos-Cárdenas, John O’Halloran, Frank N.A.M. van Pelt, Marcel A. K. Jansen
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-017-08844-8

Scale-dependent changes in the functional diversity of macrophytes in subtropical freshwater lakes in south China
Cited by: 16
Author(s): Hui Fu, Jun Zhong, Shaowen Fang, Jianmin Hu, Caixia Guo, Qian Lei, Guixiang Yuan, Taotao Dai, Zhongqiang Li, Meng Zhang, Wei Li, Jun Xu, Ting Cao
Software Mentions: 6
Published: almost 9 years ago

10.3390/ijms22116052

Satellitome Analysis of Rhodnius prolixus, One of the Main Chagas Disease Vector Species
Cited by: 18
Author(s): Eugenia E. Montiel, Francisco Panzera, Teresa Palomeque, Pedro Lorite, Sebastián Pita
Software Mentions: 6
Published: about 5 years ago

10.1186/s12885-021-07854-0

Tumor co-expression of progranulin and sortilin as a prognostic biomarker in breast cancer
Cited by: 8
Author(s): Karoline Berger, Sara Rhost, Svanheiður Rafnsdóttir, Éamon Hughes, Yvonne Magnusson, Maria Ekholm, Olle Stål, Lisa Rydén, Göran Landberg
Software Mentions: 6
Published: over 5 years ago

10.3389/fbioe.2021.612893

Multiomics Data Collection, Visualization, and Utilization for Guiding Metabolic Engineering
Cited by: 4
Author(s): Somtirtha Roy, Tijana Radivojević, Mark Forrer, Jose Manuel Martí, Vamshi Jonnalagadda, Tyler W. H. Backman, William Morrell, Hector Plahar, Joonhoon Kim, Nathan J. Hillson, Héctor García Martín
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.57345

Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
Cited by: 37
Author(s): Michelle C. Ward, Nicholas E. Banovich, Abhishek Sarkar, Matthew Stephens, Yoav Gilad
Software Mentions: 6
Published: over 5 years ago

10.1186/s12885-015-1993-3

TGFβ isoforms and receptors mRNA expression in breast tumours: prognostic value and clinical implications
Cited by: 23
Author(s): Chenfeng Chen, Kong‐Nan Zhao, Paul P. Masci, Sunil R. Lakhani, Annika Antonsson, Peter T. Simpson, Luis Vitetta
Software Mentions: 6
Published: over 10 years ago

10.1007/s10549-020-05978-8

Concurrent versus sequential use of trastuzumab and chemotherapy in early HER2+ breast cancer
Cited by: 2
Author(s): Gwen Dackus, Katarzyna Jóźwiak, Elsken van der Wall, Paul J. van Diest, Michael Hauptmann, Sabine Siesling, Gabe S. Sonke, Sabine C. Linn
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-52148-y

Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
Cited by: 64
Author(s): Vanessa Brisson, Jennifer E. Schmidt, Trent Northen, John P. Vogel, Amélie C. M. Gaudin
Software Mentions: 6
Published: over 6 years ago

10.1038/sdata.2017.185

An RNA-Seq atlas of gene expression in mouse and rat normal tissues
Cited by: 95
Author(s): Julia F. Söllner, Germán Leparc, Tobias Hildebrandt, H. Klein, Leo Thomas, Elia Stupka, Eric J. Simon
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-018-21530-7

Georeferenced soil provenancing with digital signatures
Cited by: 12
Author(s): Matthew Tighe, Nicola Forster, Christopher N. Guppy, Devin Savage, Peter Grave, Iain M. Young
Software Mentions: 6
Published: over 8 years ago

10.18632/oncotarget.24656

<i>TP53</i> and <i>OSBPL10</i> alterations in diffuse large B-cell lymphoma: prognostic markers identified via exome analysis of cases with extreme prognosis
Cited by: 10
Author(s): Akito Dobashi, Yosuke Togashi, Norio Tanaka, Masahiro Yokoyama, Naoko Tsuyama, Satoko Baba, Seiichi Mori, Kiyohiko Hatake, Toshiharu Yamaguchi, Tetsuo Noda, Kengo Takeuchi
Software Mentions: 6
Published: about 8 years ago

10.1186/s12917-019-1803-2

A longitudinal prospective cohort study investigating the association of premilking stimulation and teat-end shape on milking characteristics and teat tissue condition in dairy cows
Cited by: 6
Author(s): Matthias Wieland, J.M. Melvin, D.V. Nydam, P.D. Virkler
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pcbi.1007869

PenDA, a rank-based method for personalized differential analysis: Application to lung cancer
Cited by: 8
Author(s): Magali Richard, Clémentine Decamps, Florent Chuffart, Élisabeth Brambilla, Sophie Rousseaux, Saadi Khochbin, Daniel Jost
Software Mentions: 6
Published: about 6 years ago