Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-018-1415-3

https://doi.org/10.1186/s13059-018-1415-3

Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC

Cited by: 49
Author(s): Andreas J. Gruber, Ralf Schmidt, Souvik Ghosh, Georges Martín, Erik van Nimwegen, Mihaela Zavolan
Published: over 6 years ago

Software Mentions 6

cran: PAS
Polygenic Analysis System (PAS)
Papers that mentioned: 178
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45