Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.devcel.2021.02.007

https://doi.org/10.1016/j.devcel.2021.02.007

Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization

Cited by: 15
Author(s): Fabio M D'Orazio, Piotr J. Balwierz, Ada Jimenez González, Yixuan Guo, Benjamín Hernández-Rodríguez, Lucy Wheatley, Aleksandra Jasiulewicz, Yavor Hadzhiev, Juan M. Vaquerizas, Bradley R. Cairns, Boris Lenhard, Ferenc Müller
Published: over 3 years ago

Software Mentions 6

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: genomation

Summary, annotation and visualization of genomic data
Papers that mentioned: 17

bioconductor: maSigPro

Significant Gene Expression Profile Differences in Time Course Gene Expression Data
Papers that mentioned: 119

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: Analyze

Analyze is a python library that provides comprehensive statistical analysis of a dataframe in 5 lines of code. It creates significant insight for data scientists, analysts and machine learning engineers, enabling quick understanding of a dataset.
Papers that mentioned: 615

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203