10.1534/g3.114.011759

Genomic Profiling of Collaborative Cross Founder Mice Infected with Respiratory Viruses Reveals Novel Transcripts and Infection-Related Strain-Specific Gene and Isoform Expression
Cited by: 22
Author(s): Hao Xiong, Juliet Morrison, Martin T. Ferris, Lisa E. Gralinski, Alan C. Whitmore, Richard Green, Matthew Thomas, Jennifer Tisoncik-Go, Gary P. Schroth, Fernando P Pardo Manuel De Villena, Ralph S. Baric, Mark T. Heise, Xinxia Peng, Michael G. Katze
Software Mentions: 7
Published: almost 12 years ago

10.7717/peerj.642

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse<i>Peromyscus eremicus</i>
Cited by: 34
Author(s): Matthew D. MacManes, Michael B. Eisen
Software Mentions: 7
Published: over 11 years ago

10.3389/fmicb.2021.664542

Nutrient-Poor Breeding Substrates of Ambrosia Beetles Are Enriched With Biologically Important Elements
Cited by: 10
Author(s): Maximilian Lehenberger, Nina Foh, Axel Göttlein, Diana L. Six, Peter H. W. Biedermann
Software Mentions: 7
Published: about 5 years ago

10.3390/ijerph16214257

Spatiotemporal Patterns of Cholera Hospitalization in Vellore, India
Cited by: 4
Author(s): Aishwarya Venkat, Tania M. Alarcon Falconi, Melissa Cruz, Meghan A. Hartwick, Shalini Anandan, Naveen Kumar, Honorine D. Ward, Balaji Veeraraghavan, Elena N. Naumova
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2020.536978

Repetitive Sampling and Control Threshold Improve 16S rRNA Gene Sequencing Results From Produced Waters Associated With Hydraulically Fractured Shale
Cited by: 2
Author(s): Jennifer L. Shelton, Elliott P. Barnhart, Leslie F. Ruppert, Aaron M. Jubb, Madalyn S. Blondes, Christina A. DeVera
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.ppat.1009537

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor
Cited by: 17
Author(s): Jay Vornhagen, Christine M. Bassis, S. Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman, Nicole Sunshine, Yunfan Fan, Caitlyn L. Holmes, Winston Timp, Michael C. Schatz, Vincent B. Young, Patricia J. Simner, Michael A. Bachman
Software Mentions: 7
Published: about 5 years ago

10.1016/j.csbj.2021.04.056

A computational analysis of transcriptional profiles from CD8(+) T lymphocytes reveals potential mechanisms of HIV/AIDS control and progression
Cited by: 3
Author(s): Sergey Ivanov, Dmitry Filimonov, O. Tarasova
Software Mentions: 7
Published: over 5 years ago

10.3389/fimmu.2018.01444

Elucidating T Cell Activation-Dependent Mechanisms for Bifurcation of Regulatory and Effector T Cell Differentiation by Multidimensional and Single-Cell Analysis
Cited by: 10
Author(s): Alla Bradley, Takeji Hashimoto, M. Ono
Software Mentions: 7
Published: almost 8 years ago

10.1186/s12942-019-0177-9

Using data from online geocoding services for the assessment of environmental obesogenic factors: a feasibility study
Cited by: 13
Author(s): Maximilian Präger, Christoph Kurz, Julian Böhm, Michael Laxy, Werner Maier
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0239009

Building a green Belt and Road: A systematic review and comparative assessment of the Chinese and English-language literature
Cited by: 18
Author(s): Hoong Chen Teo, Ahimsa Campos‐Arceiz, Binbin V. Li, Mingquan Wu, Alex M. Lechner
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2019.00675

Influence of Urbanization on Epiphytic Bacterial Communities of the Platanus × hispanica Tree Leaves in a Biennial Study
Cited by: 29
Author(s): Jordan Espenshade, Sofie Thijs, S.W. Gawroński, Hannelore Bové, Nele Weyens, Jaco Vangronsveld
Software Mentions: 7
Published: about 7 years ago

10.3389/fpsyt.2021.668297

Estimating the Prevalence and Genetic Risk Mechanisms of ARFID in a Large Autism Cohort
Cited by: 26
Author(s): Tanner Koomar, Taylor Thomas, Natalie R. Pottschmidt, Michael Lutter, Jacob J. Michaelson
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0171784

rEHR: An R package for manipulating and analysing Electronic Health Record data
Cited by: 14
Author(s): David A. Springate, Rosa Parisi, Iván Olier, David Reeves, Evangelos Kontopantelis
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pgen.1008506

Latent transcriptional variations of individual Plasmodium falciparum uncovered by single-cell RNA-seq and fluorescence imaging
Cited by: 21
Author(s): Katelyn A. Walzer, Hélène Fradin, Liane Y. Emerson, David L. Corcoran, Jen‐Tsan Chi
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0246529

Unsupervised learning of Swiss population spatial distribution
Cited by: 0
Author(s): Mikhaïl Kanevski
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.01214

The Significance of the CLDN18-ARHGAP Fusion Gene in Gastric Cancer: A Systematic Review and Meta-Analysis
Cited by: 19
Author(s): Weihan Zhang, Shouyue Zhang, Qing Hou, Yun Qin, Xin-Zu Chen, Zong‐Guang Zhou, Yang Shu, Hong‐Xi Xu, Jian‐Kun Hu
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2020.00012

Identification and Validation of an Individualized Prognostic Signature of Bladder Cancer Based on Seven Immune Related Genes
Cited by: 61
Author(s): Huaide Qiu, Xiaorong Hu, Chuan He, Bin Yu, Yongqiang Li, Jianan Li
Software Mentions: 7
Published: over 6 years ago

10.1186/s12967-019-1909-0

ALS blood expression profiling identifies new biomarkers, patient subgroups, and evidence for neutrophilia and hypoxia
Cited by: 38
Author(s): William R. Swindell, Colin Kruse, Edward O. List, Darlene E. Berryman, John J. Kopchick
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.ppat.1009130

Infection of human Nasal Epithelial Cells with SARS-CoV-2 and a 382-nt deletion isolate lacking ORF8 reveals similar viral kinetics and host transcriptional profiles
Cited by: 90
Author(s): Akshamal M Gamage, Kai Sen Tan, Wharton Chan, Jing Liu, Chee Wah Tan, Yew Kwang Ong, Mark Thong, Anand Kumar Andiappan, Danielle E. Anderson, De Yun Wang, Lin‐Fa Wang
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0242987

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more
Cited by: 24
Author(s): Magdalena Skarżyńska, Pimlapas Leekitcharoenphon, René S. Hendriksen, Frank Møller Aarestrup, Dariusz Wasyl
Software Mentions: 7
Published: over 5 years ago

10.1186/s13059-019-1862-5

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
Cited by: 225
Author(s): José Alquicira-Hernández, Anuja Sathe, Hanlee P. Ji, Quan Nguyen, Joseph E. Powell
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2019.00971

Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool
Cited by: 15
Author(s): André Nicolau Aquime Gonçalves, Melissa Lever, Pedro Russo, Bruno Gomes-Correia, Alysson H. Urbanski, Gabriele Pollara, Mahdad Noursadeghi, Vinicius Maracaja‐Coutinho, Helder I. Nakaya
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pntd.0006044

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)
Cited by: 15
Author(s): Daria Kokova, Sarantos Kostidis, Judit Morello, Nataly Dementeva, Ekaterina A. Perina, V. V. Ivanov, Л. М. Огородова, А. Э. Сазонов, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: over 8 years ago

10.3389/fonc.2020.636549

Construction and Validation of Nomograms Predicting Survival in Triple-Negative Breast Cancer Patients of Childbearing Age
Cited by: 1
Author(s): Xiang Cui, Deba Song, Xiaoxu Li
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.104116

Integrated analysis of a competing endogenous RNA network reveals an 11-lncRNA prognostic signature in ovarian cancer
Cited by: 3
Author(s): Yongjian Zhang, Hu Zhou, Mei‐Yin Zhang, Linan Xing, Chang Yang, Bairong Xia, Ge Lou
Software Mentions: 7
Published: over 5 years ago

10.3389/fmed.2021.670694

Investigation of Coagulation Biomarkers to Assess Clinical Deterioration in SARS-CoV-2 Infection
Cited by: 15
Author(s): Paul Billoir, Kévin Alexandre, Thomas Duflot, Maxime Roger, S. Miranda, Odile Goria, Luc Marie Joly, Mathieu Demeyere, Guillaume Feugray, Valéry Brunel, Manuel Etienne, Véronique Le Cam Duchez
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0225216

Abundance of ethnically biased microsatellites in human gene regions
Cited by: 3
Author(s): Nicholas A. Kinney, Lin Kang, Laurel Eckstrand, Arichanah Pulenthiran, Peter Samuel, Ramu Anandakrishnan, Robin Varghese, Pawel Michalak, Harold R. Garner
Software Mentions: 7
Published: over 6 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0124600

MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and Development
Cited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: about 11 years ago

10.1186/s40168-019-0677-7

Maize synthesized benzoxazinoids affect the host associated microbiome
Cited by: 160
Author(s): Enoch Narh Kudjordjie, Rumakanta Sapkota, Stine K. Steffensen, Inge S. Fomsgaard, Mogens Nicolaisen
Software Mentions: 7
Published: about 7 years ago

10.18632/aging.202269

Immune profile of the tumor microenvironment and the identification of a four-gene signature for lung adenocarcinoma
Cited by: 15
Author(s): Tao Fan, Mark Zhu, Li-Yu Wang, Yu Liu, He Tian, Zheng Yang, Fengwei Tan, Nan Sun, Chunxiang Li, Jie He
Software Mentions: 7
Published: over 5 years ago

10.3390/biom11050704

Into the Deep: New Data on the Lipid and Fatty Acid Profile of Redfish Sebastes mentella Inhabiting Different Depths in the Irminger Sea
Cited by: 12
Author(s): Viktor P. Voronin, Н. Н. Немова, Т. Р. Руоколайнен, Д. В. Артеменков, Aleksei Y. Rolskii, А. М. Орлов, С. А. Мурзина
Software Mentions: 7
Published: about 5 years ago

10.1186/s13046-019-1505-4

A pre-existing population of ZEB2+ quiescent cells with stemness and mesenchymal features dictate chemoresistance in colorectal cancer
Cited by: 54
Author(s): Federica Francescangeli, Paola Contavalli, Maria Laura De Angelis, Silvia Careccia, Michele Signore, Tobias Haas, Federico Salaris, Marta Baiocchi, Alessandra Boe, Alessandro Giuliani, Olga Tcheremenskaia, Alfredo Pagliuca, Ombretta Guardiola, Gabriella Minchiotti, Lidia Colace, Antonio Ciardi, Vito D’Andrea, Filippo La Torre, Jan Paul Medema, Ruggero De Maria, Ann Zeuner
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0201016

Predicting hospital admission at emergency department triage using machine learning
Cited by: 155
Author(s): Woo Suk Hong, Adrian D. Haimovich, Richard A. Taylor
Software Mentions: 7
Published: almost 8 years ago

10.1371/journal.pone.0223010

KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services
Cited by: 27
Author(s): Julian Gruendner, Thorsten Schwachhofer, Phillip Sippl, Nicolas Wolf, Marcel Erpenbeck, Christian Gülden, Lorenz A. Kapsner, Jakob Zierk, Sebastian Mate, Michael Stürzl, Roland S. Croner, Hans‐Ulrich Prokosch, Dennis Toddenroth
Software Mentions: 7
Published: over 6 years ago

10.1186/gb-2011-12-6-r60

Metagenomic biomarker discovery and explanation
Cited by: 9,402
Author(s): Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S. Garrett, Curtis Huttenhower
Software Mentions: 7
Published: over 15 years ago

10.1371/journal.pone.0159138

Technical Advances of the Recombinant Antibody Microarray Technology Platform for Clinical Immunoproteomics
Cited by: 26
Author(s): Payam Delfani, Linda Dexlin Mellby, Malin Nordström, Andreas Holmér, Mattias Ohlsson, Carl Borrebaeck, Christer Wingren
Software Mentions: 7
Published: almost 10 years ago

10.1186/s12859-021-04043-5

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons
Cited by: 4
Author(s): Jakob Willforss, Valentina Siino, Fredrik Levander
Software Mentions: 7
Published: over 5 years ago

10.1038/s42003-020-01175-x

Genetic alterations in the 3q26.31-32 locus confer an aggressive prostate cancer phenotype
Cited by: 3
Author(s): Benjamin S. Simpson, Niedzica Camacho, Hayley J. Luxton, Hayley Pye, Ron Finn, Susan Heavey, Jason J. Pitt, Caroline M. Moore, Hayley C. Whitaker
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-017-10853-6

The Schistosoma mansoni genome encodes thousands of long non-coding RNAs predicted to be functional at different parasite life-cycle stages
Cited by: 39
Author(s): Elton J. R. Vasconcelos, Luis DaSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo Sena Amaral, Sérgio Verjovski-Almeida
Software Mentions: 7
Published: almost 9 years ago

10.1016/j.psj.2021.101300

The relationship between gait and automated recordings of individual broiler activity levels
Cited by: 7
Author(s): M. van der Sluis, E.D. Ellen, B. de Klerk, T.B. Rodenburg, Y. de Haas
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12859-021-04392-1

shinyCurves, a shiny web application to analyse multisource qPCR amplification data: a COVID-19 case study
Cited by: 1
Author(s): Sonia Olaechea-Lázaro, Iraia García-Santisteban, José Ramón Pineda, Iker Badiola, Santos Alonso, José Ramón Bilbao, Nora Fernández-Jiménez
Software Mentions: 7
Published: over 4 years ago

10.3390/nu10091248

Effect of Whey Protein Supplementation on Physical Performance and Body Composition in Army Initial Entry Training Soldiers
Cited by: 15
Author(s): Jeremy McAdam, Kaitlin McGinnis, Darren T. Beck, Cody T. Haun, Matthew A. Romero, Petey W. Mumford, Paul A. Roberson, Kaelin C. Young, Keith R. Lohse, Lockwood Cm, Michael D. Roberts, Jo Ellen M. Sefton
Software Mentions: 7
Published: almost 8 years ago

10.1002/ece3.7654

Looking for the needle in a downsized haystack: Whole‐exome sequencing unravels genomic signals of climatic adaptation in Douglas‐fir (<i>Pseudotsuga menziesii</i>)
Cited by: 1
Author(s): Jan-Peter George, Silvio Schueler, Michael Grabner, Sandra Karanitsch-Ackerl, Konrad Mayer, Michael Stierschneider, Lambert Weißenbacher, Marcela van Loo
Software Mentions: 7
Published: about 5 years ago

10.3389/fcell.2021.624053

“All-In-One” Genetic Tool Assessing Endometrial Receptivity for Personalized Screening of Female Sex Steroid Hormones
Cited by: 7
Author(s): Pavel Deryabin, А. П. Домнина, Inga V. Gorelova, M. V. Rulev, М. А. Petrosyan, Nikolay Nikolsky, Aleksandra Borodkina
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0116508

Large Scale Aggregate Microarray Analysis Reveals Three Distinct Molecular Subclasses of Human Preeclampsia
Cited by: 90
Author(s): Katherine Leavey, Shannon Bainbridge, Brian Cox
Software Mentions: 7
Published: over 11 years ago

10.18632/oncotarget.13492

Tyrosine kinase fusion genes in pediatric <i>BCR-ABL1</i>-like acute lymphoblastic leukemia
Cited by: 62
Author(s): Judith M. Boer, Elisabeth M. P. Steeghs, João R. M. Marchante, Aurélie Boeree, James J. Beaudoin, H. Berna Beverloo, Roland P. Kuiper, Gabriele Escherich, Vincent H.J. van der Velden, C. Ellen van der Schoot, Hester A. de Groot-Kruseman, Rob Pieters, Monique L. den Boer
Software Mentions: 7
Published: over 9 years ago

10.3389/fpls.2021.661361

Unraveling Root Development Through Single-Cell Omics and Reconstruction of Gene Regulatory Networks
Cited by: 2
Author(s): Laura Serrano-Ron, Javier Cabrera, Pablo Pérez-García, Miguel A. Moreno-Risueño
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2019.00292

Identification of Long Non-coding and Messenger RNAs Differentially Expressed Between Primary and Metastatic Melanoma
Cited by: 16
Author(s): Lichang Sun, Zhiguang Guan, Shanshan Wei, Rui Tan, Pengfei Li, Yan Liu
Software Mentions: 7
Published: about 7 years ago

10.1186/s12970-018-0262-7

Estimation of energy balance and training volume during Army Initial Entry Training
Cited by: 20
Author(s): Jeremy McAdam, Kaitlin McGinnis, Rian Ory, Kaelin C. Young, Andrew D. Frugé, Michael D. Roberts, JoEllen M. Sefton
Software Mentions: 7
Published: over 8 years ago

10.1186/s12882-018-0995-1

Low agreement between modified-Schwartz and CKD-EPI eGFR in young adults: a retrospective longitudinal cohort study
Cited by: 15
Author(s): Michael Webster‐Clark, Byron C. Jaeger, Yi Zhong, Guido Filler, Ana Catalina Álvarez-Elías, Nora Franceschini, Maria Ferris
Software Mentions: 7
Published: almost 8 years ago

10.3390/ijerph17155619

Investigating Connections between Need for Cognitive Closure and Climate Change Concern in College Students
Cited by: 6
Author(s): Margaret Orr, Alan E. Stewart, Andrew Grundstein
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2020.00895

Identification of Hub Genes Associated With Hepatocellular Carcinoma Using Robust Rank Aggregation Combined With Weighted Gene Co-expression Network Analysis
Cited by: 10
Author(s): Hongjiang Song, Na Ding, Shang Li, Jianlong Liao, Aimin Xie, Youtao Yu, Chunlong Zhang, Caifang Ni
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0230767

The design and implementation of restraint devices for the injection of pathogenic microorganisms into Galleria mellonella
Cited by: 8
Author(s): Lance R. Fredericks, Mark D. Lee, Cooper R. Roslund, Angela Crabtree, Peter B. Allen, Paul A. Rowley
Software Mentions: 7
Published: almost 6 years ago

10.1093/gigascience/giy093

Leveraging multiple transcriptome assembly methods for improved gene structure annotation
Cited by: 110
Author(s): Luca Venturini, Shabhonam Caim, Gemy Kaithakottil, Daniel Mapleson, David Swarbreck
Software Mentions: 7
Published: almost 8 years ago

10.1128/mBio.00630-18

Leveraging Existing 16S rRNA Gene Surveys To Identify Reproducible Biomarkers in Individuals with Colorectal Tumors
Cited by: 34
Author(s): Marc A. Sze, Patrick D. Schloss
Software Mentions: 7
Published: almost 8 years ago

10.3389/fpsyg.2019.00413

A Shared Food Source Is Not Necessary to Elicit Inequity Aversion in Dogs
Cited by: 5
Author(s): Jim McGetrick, Sabrina Ausserwöger, Ingrid Leidinger, Claudia Attar, Friederike Range
Software Mentions: 7
Published: over 7 years ago

10.1038/s41398-020-01176-8

The placenta protects the fetal circulation from anxiety-driven elevations in maternal serum levels of brain-derived neurotrophic factor
Cited by: 7
Author(s): Hayley Dingsdale, Xinsheng Nan, Samantha M. Garay, Annett Mueller, Lorna Sumption, Pedro Chacón-Fernández, Isabel Martinez‐Garay, Cédric Ghevaert, Yves‐Alain Barde, John Roshan
Software Mentions: 7
Published: over 5 years ago

10.1186/s13321-019-0332-0

Chemoinformatics and structural bioinformatics in OCaml
Cited by: 5
Author(s): Francois Berenger, Kam Y. J. Zhang, Yoshihiro Yamanishi
Software Mentions: 7
Published: over 7 years ago

10.1038/s41598-021-92301-0

The effect of COVID19 pandemic restrictions on an urban rodent population
Cited by: 9
Author(s): Miguel A. Bedoya‐Pérez, Michael P. Ward, Max Loomes, Iain S. McGregor, Mathew S. Crowther
Software Mentions: 7
Published: about 5 years ago

10.26508/lsa.202000897

Tissue-selective alternate promoters guide NLRP6 expression
Cited by: 1
Author(s): Nathan A. Bracey, Jaye M. Platnich, Arthur Lau, Hyunsoo Chung, M. Eric Hyndman, Justin A. MacDonald, Justin Chun, Paul L. Beck, Stephen E. Girardin, Paul M. Gordon, Daniel A. Muruve
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-70967-2

Transcriptomics uncovers substantial variability associated with alterations in manufacturing processes of macrophage cell therapy products
Cited by: 14
Author(s): Olga L. Gurvich, Katja A. Puttonen, Aubrey Bailey, Anssi Kailaanmäki, Vita Skirdenko, Minna Sivonen, Sanna Pietikäinen, Nigel R. Parker, Seppo Ylä‐Herttuala, Tuija Kekarainen
Software Mentions: 7
Published: almost 6 years ago

10.3389/fnins.2021.621121

Analysis of the Neuroproteome Associated With Cell Therapy After Intranigral Grafting in a Mouse Model of Parkinson Disease
Cited by: 1
Author(s): Hassan Dakik, Sarah Mantash, Ali Nehme, Firas Kobeissy, Masoud Zabet-Moghaddam, Parvin Mirzaei, Yehia Mechref, Afsaneh Gaillard, Laetitia Prestoz, Kazem Zibara
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-76780-1

Water warming increases aggression in a tropical fish
Cited by: 19
Author(s): Zi Xun Kua, Ian M. Hamilton, Allison L. McLaughlin, Reed M. Brodnik, S. Conor Keitzer, Jake Gilliland, Elizabeth A. Hoskins, Stuart A. Ludsin
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.614487

Distinguishable Prognostic miRNA Signatures of Head and Neck Squamous Cell Cancer With or Without HPV Infection
Cited by: 10
Author(s): Xinmei Luo, Min Zheng, Mingxin Cao, Weilong Zhang, Mengyuan Huang, Li Dai, Yaling Tang, Xin‐hua Liang
Software Mentions: 7
Published: over 5 years ago

10.1186/s13148-020-0821-z

DNA methylation-driven EMT is a common mechanism of resistance to various therapeutic agents in cancer
Cited by: 49
Author(s): Eva Galle, Bernard Thienpont, Sarah Cappuyns, Tom Venken, Pieter Busschaert, Matthias Van Haele, Éric Van Cutsem, Tania Roskams, Jos van Pelt, Chris Verslype, Jeroen Dekervel, Diether Lambrechts
Software Mentions: 7
Published: over 6 years ago

10.1186/s12859-017-1914-3

bcROCsurface: an R package for correcting verification bias in estimation of the ROC surface and its volume for continuous diagnostic tests
Cited by: 6
Author(s): Khanh To Duc
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-020-71173-w

Standardized massage interventions as protocols for the induction of psychophysiological relaxation in the laboratory: a block randomized, controlled trial
Cited by: 10
Author(s): Maria Meier, Eva Unternäehrer, Stephanie J. Dimitroff, Annika Benz, Ulrike U. Bentele, Sabine M. Schorpp, Maya Wenzel, Jens C. Pruessner
Software Mentions: 7
Published: almost 6 years ago

10.1007/s00248-018-1209-x

Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition
Cited by: 35
Author(s): Marcin Gołębiewski, Agata Tarasek, Marcin Sikora, Edyta Deja-Sikora, Andrzej Tretyn, Maria Niklińska
Software Mentions: 7
Published: about 8 years ago

10.3389/fpls.2019.01246

Temporal Dynamics of the Sap Microbiome of Grapevine Under High Pierce’s Disease Pressure
Cited by: 43
Author(s): Elizabeth Deyett, Philippe E. Rolshausen
Software Mentions: 7
Published: over 6 years ago

10.1038/s42003-020-01626-5

Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups
Cited by: 44
Author(s): Kaleb Z. Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M. Wassenaar, Michael S. Robeson, David W. Ussery
Software Mentions: 7
Published: over 5 years ago

10.3389/fmicb.2019.02330

Metagenomics Reveals Bacterial and Archaeal Adaptation to Urban Land-Use: N Catabolism, Methanogenesis, and Nutrient Acquisition
Cited by: 12
Author(s): Dietrich Epp Schmidt, D. Johan Kotze, Elisabeth Hornung, Heikki Setälä, Ian D. Yesilonis, Katalin Szlávecz, Miklós Dombos, Richard V. Pouyat, Sarel S. Cilliers, Zsolt Tóth, Stephanie A. Yarwood
Software Mentions: 7
Published: over 6 years ago

10.3389/fninf.2018.00030

Information-Theoretical Analysis of EEG Microstate Sequences in Python
Cited by: 13
Author(s): Frederic von Wegner, Helmut Laufs
Software Mentions: 7
Published: about 8 years ago

10.3389/fonc.2020.00061

The Prognostic Significance of Metabolic Syndrome and a Related Six-lncRNA Signature in Esophageal Squamous Cell Carcinoma
Cited by: 18
Author(s): Yu Liu, Li-Yu Wang, Hengchang Liu, Chunxiang Li, Jie He
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2019.01372

4See: A Flexible Browser to Explore 4C Data
Cited by: 12
Author(s): Yousra Ben Zouari, Angeliki Platania, Anne Molitor, Tom Sexton
Software Mentions: 7
Published: over 6 years ago

10.1002/ece3.3242

Using digital soil maps to infer edaphic affinities of plant species in Amazonia: Problems and prospects
Cited by: 29
Author(s): Gabriel M. Moulatlet, Gabriela Zuquim, Fernando O. G. Figueiredo, Samuli Lehtonen, Thaíse Emilio, Kalle Ruokolainen, Hanna Tuomisto
Software Mentions: 7
Published: almost 9 years ago

10.1371/journal.pone.0173115

Altered regulation and expression of genes by BET family of proteins in COPD patients
Cited by: 11
Author(s): Rajneesh Malhotra, Nisha Kurian, Xin Zhou, Fang Jiang, Susan J. Monkley, Amy DeMicco, Ib Groth Clausen, Göran Dellgren, Goran Edenro, Miika J. Ahdesmäki, Maryam Clausen, Lisa Öberg, Elisabeth Israelsson, Graham Belfield, Outi Vaarala
Software Mentions: 7
Published: over 9 years ago

10.3389/fninf.2019.00014

Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data Visualization
Cited by: 44
Author(s): Etienne Combrisson, Raphaël Vallat, Christian O’Reilly, Mainak Jas, Annalisa Pascarella, Anne-Lise Saive, Thomas Thiery, David Meunier, Dmitrii Altukhov, Tarek Lajnef, Perrine Ruby, Aymeric Guillot, Karim Jerbi
Software Mentions: 7
Published: over 7 years ago

10.7554/eLife.13503

A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types
Cited by: 50
Author(s): Yasuyuki Shima, Ken Sugino, Chris M. Hempel, Masami Shima, Praveen Taneja, James B. Bullis, Sonam Mehta, Carlos Lois, Sacha B. Nelson
Software Mentions: 7
Published: over 10 years ago

10.1186/s12864-016-3300-3

Assessing characteristics of RNA amplification methods for single cell RNA sequencing
Cited by: 32
Author(s): Hannah Dueck, Rizi Ai, Adrian Camarena, Bo Ding, Reymundo Dominguez, Oleg V. Evgrafov, Jian–Bing Fan, Stephen Fisher, Jennifer Herstein, Tae Kyung Kim, Jae Mun Kim, Ming-Yi Lin, Rui Li, William J. Mack, Sean McGroty, Joseph Nguyen, Neeraj Salathia, Jamie Shallcross, Tade Souaiaia, Jennifer M. Spaethling, Christopher Walker, Jinhui Wang, Kai Wang, Wei Wang, André Wildberg, Lina Zheng, Robert H. Chow, James Eberwine, James A. Knowles, Kun Zhang, Junhyong Kim
Software Mentions: 7
Published: over 9 years ago

10.3389/fnhum.2018.00472

The Role of Frontostriatal Systems in Instructed Reinforcement Learning: Evidence From Genetic and Experimentally-Induced Variation
Cited by: 2
Author(s): Nathan Tardiff, Kathryn N. Graves, Sharon L. Thompson-Schill
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0227289

Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach
Cited by: 27
Author(s): Aashish R. Jha, Justin Shmalberg, Jirayu Tanprasertsuk, Lee Ann M. Perry, Dan Massey, Ryan W. Honaker
Software Mentions: 7
Published: over 6 years ago

10.1525/collabra.116

Individual Importance Weighting of Domain Satisfaction Ratings does Not Increase Validity
Cited by: 21
Author(s): Julia M. Rohrer, Stefan C. Schmukle
Software Mentions: 7
Published: over 8 years ago

10.1186/s13148-021-01129-y

Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD
Cited by: 22
Author(s): Nicholas Johnson, Xiumei Wu, Christopher D. Still, Xin Chu, Anthony Petrick, Glenn S. Gerhard, Karen N. Conneely, Johanna K. DiStefano
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2021.656250

Temperature and Nutrient Limitations Decrease Transfer of Conjugative IncP-1 Plasmid pKJK5 to Wild Escherichia coli Strains
Cited by: 15
Author(s): Rebeca Pallares-Vega, G. Macedo, Michael S.M. Brouwer, Lucía Hernández Leal, Peter van der Maas, Mark C.M. van Loosdrecht, David G. Weissbrodt, Dick Heederik, Dik Mevius, Heike Schmitt
Software Mentions: 7
Published: almost 5 years ago

10.3389/fendo.2017.00145

Early Intranasal Vasopressin Administration Impairs Partner Preference in Adult Male Prairie Voles (Microtus ochrogaster)
Cited by: 11
Author(s): Trenton C. Simmons, Jessica F. Balland, Janeet Dhauna, Sang Yun Yang, Jason L. Traina, Jessica Vázquez, Karen L. Bales
Software Mentions: 7
Published: about 9 years ago

10.1038/s41598-019-43758-7

In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival
Cited by: 2
Author(s): Danish Memon, Jing Bi, Crispin Miller
Software Mentions: 7
Published: about 7 years ago

10.3390/foods6040031

Validation of a Novel Technique and Evaluation of the Surface Free Energy of Food
Cited by: 19
Author(s): Tugce Sentürk Parreidt, Markus Schmid, Carolin Hauser
Software Mentions: 7
Published: about 9 years ago

10.3390/ijerph17217771

The Quality of Work Index and the Quality of Employment Index: A Multidimensional Approach of Job Quality and Its Links to Well-Being at Work
Cited by: 23
Author(s): Georges Steffgen, Philipp Sischka, Martha Fernandez de Henestrosa
Software Mentions: 7
Published: over 5 years ago

10.1002/ece3.4704

Flying between raindrops: Strong seasonal turnover of several Lepidoptera groups in lowland rainforests of Mount Cameroon
Cited by: 28
Author(s): Vincent Maicher, Szabolcs Sáfián, Mercy Murkwe, Łukasz Przybyłowicz, Štěpán Janeček, Eric B. Fokam, Tomasz W. Pyrcz, Robert Tropek
Software Mentions: 7
Published: over 7 years ago

10.1128/mSystems.00086-17

Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota
Cited by: 8
Author(s): Eric J. de Muinck, Knut E.A. Lundin, Pål Trosvik
Software Mentions: 7
Published: over 8 years ago

10.1088/2515-7620/abb831

Using longitudinal survey and sensor data to understand the social and ecological determinants of clean fuels use and discontinuance in rural Ghana
Cited by: 9
Author(s): Daniel Carrión, Rebecca Kyerewaa Dwommoh Prah, Carlos F. Gould, Francis Agbokey, Mohammed Mujtaba, Ajay Pillarisetti, M Tumasi, Oscar Agyei, Steven N. Chillrud, Theresa Tawiah, Darby Jack, Kwaku Poku Asante
Software Mentions: 7
Published: almost 6 years ago

10.3390/metabo11030186

Elemental and Isotopic Characterization of Tobacco from Umbria
Cited by: 3
Author(s): Luana Bontempo, D. Bertoldi, Pietro Franceschi, Fabio Rossi, R. Larcher
Software Mentions: 7
Published: over 5 years ago

10.1186/s12864-016-3260-7

DeSigN: connecting gene expression with therapeutics for drug repurposing and development
Cited by: 52
Author(s): Bernard Kok Bang Lee, Kai Hung Tiong, Jit Kang Chang, Chee Sun Liew, Zainal Ariff Abdul Rahman, Aik Choon Tan, Tsung Fei Khang, Sok Ching Cheong
Software Mentions: 7
Published: over 9 years ago

10.1016/j.diabres.2019.01.008

Differential methylation of the type 2 diabetes susceptibility locus KCNQ1 is associated with insulin sensitivity and is predicted by CpG site specific genetic variation
Cited by: 14
Author(s): Ushma Jaykamal Shah, Wenting Xie, Allan Flyvbjerg, John J. Nolan, Kurt Højlund, Mark Walker, Caroline L Relton, Hannah R Elliott
Software Mentions: 7
Published: over 7 years ago

10.1186/s13195-020-00654-x

Identification of potential blood biomarkers for early diagnosis of Alzheimer’s disease through RNA sequencing analysis
Cited by: 44
Author(s): Daichi Shigemizu, Tomohisa Mori, Shintaro Akiyama, Sayuri Higaki, Hiroshi Watanabe, Takashi Sakurai, Shumpei Niida, Kouichi Ozaki
Software Mentions: 7
Published: almost 6 years ago

10.1371/journal.pgen.1007784

Maternal and zygotic gene regulatory effects of endogenous RNAi pathways
Cited by: 17
Author(s): Miguel Vasconcelos Almeida, António Miguel de Jesus Domingues, René F. Ketting
Software Mentions: 7
Published: over 7 years ago

10.1007/s00406-019-01078-x

The network structure of schizotypy in the general population
Cited by: 12
Author(s): Bertalan Polner, Eliana Faiola, María Fernanda Urquijo, Inga Meyhöfer, Maria Steffens, Levente Rónai, Nikolaos Koutsouleris, Ulrich Ettinger
Software Mentions: 7
Published: over 6 years ago

10.1186/s13059-020-02098-w

Population variation in miRNAs and isomiRs and their impact on human immunity to infection
Cited by: 11
Author(s): Maxime Rotival, Katherine J. Siddle, Martin Silvert, Julien Pothlichet, Hélène Quach, Lluı́s Quintana-Murci
Software Mentions: 7
Published: almost 6 years ago