Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-018-1521-2

https://doi.org/10.1186/s13059-018-1521-2

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data

Cited by: 18
Author(s): Philipp Drewe-Boß, Hans-Hermann Wessels, Uwe Ohler
Published: about 6 years ago

Software Mentions 7

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: RCAS
RNA Centric Annotation System
Papers that mentioned: 8
cran: NHMM
Bayesian Non-Homogeneous Markov and Mixture Models for Multiple Time Series
Papers that mentioned: 5
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: fastx
Just a simple kseq.h binding
Papers that mentioned: 197