Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-020-02049-5
https://doi.org/10.1186/s13059-020-02049-5
Cited by: 13
Author(s): Quanyi Zhao, Michael Dacre, Trieu Nguyen, Milos Pjanic, Boxiang Liu, Dharini Iyer, Paul Cheng, Robert Wirka, Juyong Brian Kim, Hunter B. Fraser, Thomas Quertermous
Published: almost 4 years ago
Software Mentions 7
bioconductor: FitHiC
Confidence estimation for intra-chromosomal contact mapsPapers that mentioned: 6
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matricesPapers that mentioned: 1,283
pypi: awk
A library to provide advanced awk-like functionalities for file manipulation in Python.Papers that mentioned: 80
pypi: gt
A simple tool for managing repositories located accross various git sources (e.g gitlab/github/unix boxes).Papers that mentioned: 7
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C dataPapers that mentioned: 33
pypi: pyGenomeTracks
Command-line tool to make beautiful and reproducible genome browser snapshotsPapers that mentioned: 20