Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.3389/fmicb.2020.607325
https://doi.org/10.3389/fmicb.2020.607325
Effects of Rare Microbiome Taxa Filtering on Statistical Analysis
Cited by: 53
Author(s): Quy Cao, Xinxin Sun, Karun Rajesh, Naga Chalasani, Kayla Gelow, Barry P. Katz, Vijay H. Shah, Arun J. Sanyal, Ekaterina Smirnova
Published: over 3 years ago
Software Mentions 7
bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing dataPapers that mentioned: 274
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing DataPapers that mentioned: 76
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experimentsPapers that mentioned: 142
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census dataPapers that mentioned: 1,702